BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57790.1
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324272 jgi|Araly1|324272|fgenesh1_pm.C_scaffold_5001816 2082 0.0
Ahg932341 jgi|Araly1|932341|scaffold_400329.1 165 1e-39
Ahg943952 jgi|Araly1|943952|scaffold_700181.1 159 5e-38
Ahg923862 jgi|Araly1|923862|scaffold_105143.1 159 5e-38
> Ahg324272 jgi|Araly1|324272|fgenesh1_pm.C_scaffold_5001816
Length=1770
Score = 2082 bits (1127), Expect = 0.0
Identities = 1306/1392 (94%), Gaps = 13/1392 (1%)
Strand=Plus/Plus
Query 298 ATGGGAAGCATATTATTGTTACTATTATTCTTTTCTCTGGTCCAATCACGTTCAG-ACAC 356
|||||||||||||||||| ||||||||||||| ||||| |||||||||||||| | ||||
Sbjct 1 ATGGGAAGCATATTATTGATACTATTATTCTTCTCTCTCGTCCAATCACGTTC-GTACAC 59
Query 357 GTCATATTCAAAAATTCAACTTCCCGGCGATTCTCTGACCCTCTCCGTTACCGATTTCGG 416
||||||||| ||||| ||||||||||||||||||||| | || |||||||||||||||||
Sbjct 60 GTCATATTCGAAAATCCAACTTCCCGGCGATTCTCTGGCTCTTTCCGTTACCGATTTCGG 119
Query 417 TGCTACCGGCGATGGTATCAACTACGATACTTCTGCGATTCAGTCAACCATTGACGCCTG 476
|||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 120 CGCTACCGGCGATGGTATCAACTACGATACTTCTGCGGTACAGTCCACCATTGACGCCTG 179
Query 477 CAATCGTCACTACACATCTTTTTCTTCCATCTGCCGCGTCGTTTTCCCTTCCGGCAACTA 536
|||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct 180 CAATCGTCACTACACATCGTCTTCTTCCATCTGCCGCGTCACTTTCCCTTCCGGCAACTA 239
Query 537 TTTGACCGCTAAGCTCCATCTCCGATCTGGCGTCATTCTCGATGTGACGGAGAACGCCGT 596
|||||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct 240 TTTGACAGCTAAGCTCCATCTCCGATCTGGTGTTGTTCTCGATGTGACGGAGAACGCTGT 299
Query 597 GCTTCTCGGTGGACCGAGAATCGAGGATTATTATCCGGCGGAGACTTCGTCGGATTGGTA 656
||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 300 GCTTCTCGGGGGACCGAGAATCGAGGACTATTATCCGGCGGAGACTTCTTCGGATTGGTA 359
Query 657 CGTGGTGGTGGCGAATAACGCTACGGATGTTGGAATCACTGGCGGAGGAGCGATTGATGG 716
||||||||||||||| ||||| ||||| |||||||| || ||||||||||||||||||||
Sbjct 360 CGTGGTGGTGGCGAACAACGCGACGGACGTTGGAATTACCGGCGGAGGAGCGATTGATGG 419
Query 717 CCAAGGATCGAAGTTCGTGGTCAGATTCGACGAGAAGAAGAACGTGATGGTGAGCTGGAA 776
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCAGGGATCGAAGTTCGTGGTCAGATTCGACGAGAAGAAGAACGTGATGGTGAGCTGGAA 479
Query 777 CCAAACCGGAGCTTGCTTGGGTGATGAGTGTAGACCCAGGCTTGTTGGATTCGTTGATTC 836
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 480 TCAAACCGGAGCTTGCTTGGGTGATGAGTGTAGACCTAGACTTGTTGGATTCGTTGATTC 539
Query 837 TATAAACGTTGAGATCTGGAACATCACACTACGAGAGCCTGCGTATTGGTGTTTGCACAT 896
|| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 540 TAGAAACGTTGAGATCTGGAACATCACATTACGAGAGCCTGCGTATTGGTGCTTGCACAT 599
Query 897 TGTGAGATGTGAGAACACATCAGTCCATGATGTATCGATCCTTGGGGACTTCAATACTCC 956
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGTGAGGTGTGAGAACACATCAGTCCATGATGTATCGATCCTTGGGGACTTCAATACTCC 659
Query 957 AAATAACGATGGAATCGACATTGAAGATTCCAACAACACTGTTATAACTCGGTGTCATAT 1016
|||||||||||||||||||||||| || || |||||||||||||||||||||||||| ||
Sbjct 660 AAATAACGATGGAATCGACATTGAGGACTCAAACAACACTGTTATAACTCGGTGTCACAT 719
Query 1017 CGATACTGGAGATGATGCAATCTGTCCCAAGACTTACACTGGTCCACTTTACAACTTAAC 1076
|| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 TGACACAGGAGATGATGCAATCTGTCCCAAGACTTATACTGGTCCACTTTACAACTTAAC 779
Query 1077 CGCTACAGACTGTTGGATCCGGACCAAATCCTCAGCCATTAAACTCGGTAGTGCGAGCTG 1136
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 780 CGCTACAGACTGTTGGATCCGAACCAAATCCTCAGCCATTAAACTCGGTAGCGCGAGCTG 839
Query 1137 GTTTGATTTCAAAGGTCTTGTCTTTGATAACATCACTATTTTTGAATCTCACAGAGGACT 1196
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 840 GTTCGACTTCAAAGGTCTTGTCTTTGATAACATCACTATTTTTGAATCTCACAGAGGCCT 899
Query 1197 TGGCATGCAAATACGCGATGGAGGAAATGTGAGTGACGTTACATTTTCAAACATAAACAT 1256
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 900 TGGCATGCAAATACGCGATGGAGGAAATGTGAGTGACATTACATTTTCAAACATAAACAT 959
Query 1257 TAGTACAAGATACTACGATCCTTCTTGGTGGGGAAGAGCAGAACCAATCTATATAACAAC 1316
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 960 TAGTACAAGATACTACGATCCTTCTTGGTGGGGACGAGCAGAACCAATCTATATAACAAC 1019
Query 1317 TTGCCCTCGTGACTCATCTGCAAAGGAAGGCTCAATCTCGAATCTCCTATTCGTAAACAT 1376
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 1020 TTGCCCGCGTGACTCATCTGCAAAGGAAGGATCAATCTCGAATCTCCTATTTGTAAATAT 1079
Query 1377 AACAATCGATTCCGAAAACGGAGTCTTTTTATCAGGTTCACCAAACGGACTACTCTCAGA 1436
||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1080 AACAATCAATTCCGAAAACGGAGTCTTTTTATCAGGCTCACCAAATGGACTACTCTCAGA 1139
Query 1437 TATAAAGTTCAAGAACATGAACCTTACTTTCAGAAGATGGAGTAATTACAGTGCAGGGCT 1496
|||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1140 TATAAAGTTCAAAAACATGAACCTTACTGTCAGAAGATGGAGTAATTATAGTGCAGGGCT 1199
Query 1497 TGTGGACTATAGACCTGGATGTCAAGGTCTAGTGAACCATAGAGCCACGTCTGGAATCAT 1556
|||||| |||||||||||||||| |||||| ||||||||||| |||||| |||| |||||
Sbjct 1200 TGTGGATTATAGACCTGGATGTCGAGGTCTCGTGAACCATAGCGCCACGGCTGGGATCAT 1259
Query 1557 TATGGAGCATGTGAACGGGTTTC-GCGTTGAGAATGTTGACCTGAAATGGTCAGATGATG 1615
||||| |||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 1260 AATGGAACATGTGAACGGGTT-CAGCATTGAGAATGTTGACCTGAAATGGTCAGATGATC 1318
Query 1616 ATGA-TGTGAATGCTGCTTGGAATGTTCCTCTCGAATTTAGACCTTCCACTGTGAATAAT 1674
||| | || ||| | | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1319 -TGAAT-TG--TGC-G-T-GGAATGTTCCTCTCGAATTTAGACCTTCCACCGTGAATAAT 1371
Query 1675 GTCTCGTTTGTT 1686
|||||||| |||
Sbjct 1372 GTCTCGTT-GTT 1382
> Ahg932341 jgi|Araly1|932341|scaffold_400329.1
Length=191
Score = 165 bits (89), Expect = 1e-39
Identities = 125/142 (88%), Gaps = 4/142 (3%)
Strand=Plus/Minus
Query 466 ATTGACGCCTGCAATCGTCACTACACATCTTTTTCTTCCATCTGCCGCGTCGTTTTCCCT 525
||||||||||||||||||||||||||||| | || | ||||||| |||||||||||| ||
Sbjct 191 ATTGACGCCTGCAATCGTCACTACACATCGTCTT-TACCATCTGTCGCGTCGTTTTCACT 133
Query 526 TCCGGCAACTATTTGACCGCTAAGCTCCATCTCCGATCTGGCGTCATTCTCGATGTGACG 585
||||||||| |||| |||||||||||||||||| |||||||||| || | ||||||||
Sbjct 132 TCCGGCAACGATTTCACCGCTAAGCTCCATCTCTGATCTGGCGTTGTT-T--ATGTGACG 76
Query 586 GAGAACGCCGTGCTTCTCGGTG 607
||||||| || ||||||||||
Sbjct 75 CAGAACGCAGTTCTTCTCGGTG 54
> Ahg943952 jgi|Araly1|943952|scaffold_700181.1
Length=191
Score = 159 bits (86), Expect = 5e-38
Identities = 124/142 (87%), Gaps = 4/142 (3%)
Strand=Plus/Minus
Query 466 ATTGACGCCTGCAATCGTCACTACACATCTTTTTCTTCCATCTGCCGCGTCGTTTTCCCT 525
||||||||||||||||||||||||||||| | || | ||||||||| ||||||||| ||
Sbjct 191 ATTGACGCCTGCAATCGTCACTACACATCGTCTT-TACCATCTGCCATGTCGTTTTCACT 133
Query 526 TCCGGCAACTATTTGACCGCTAAGCTCCATCTCCGATCTGGCGTCATTCTCGATGTGACG 585
||||||||| |||| |||||||||||||||||| |||||||||| || | ||||||||
Sbjct 132 TCCGGCAACGATTTCACCGCTAAGCTCCATCTCTGATCTGGCGTTGTT-T--ATGTGACG 76
Query 586 GAGAACGCCGTGCTTCTCGGTG 607
||||||| || ||||||||||
Sbjct 75 CAGAACGCAGTTCTTCTCGGTG 54
> Ahg923862 jgi|Araly1|923862|scaffold_105143.1
Length=191
Score = 159 bits (86), Expect = 5e-38
Identities = 124/142 (87%), Gaps = 4/142 (3%)
Strand=Plus/Minus
Query 466 ATTGACGCCTGCAATCGTCACTACACATCTTTTTCTTCCATCTGCCGCGTCGTTTTCCCT 525
||||||||||||||||||||||||||||| | || | ||||||||| ||||||||| ||
Sbjct 191 ATTGACGCCTGCAATCGTCACTACACATCGTCTT-TACCATCTGCCATGTCGTTTTCACT 133
Query 526 TCCGGCAACTATTTGACCGCTAAGCTCCATCTCCGATCTGGCGTCATTCTCGATGTGACG 585
||||||||| |||| |||||||||||||||||| |||||||||| || | ||||||||
Sbjct 132 TCCGGCAACGATTTCACCGCTAAGCTCCATCTCTGATCTGGCGTTGTT-T--ATGTGACG 76
Query 586 GAGAACGCCGTGCTTCTCGGTG 607
||||||| || ||||||||||
Sbjct 75 CAGAACGCAGTTCTTCTCGGTG 54
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66315116545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5