BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57800.1
Length=1817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486233 jgi|Araly1|486233|fgenesh2_kg.5__2225__AT3G57800.1 1694 0.0
Ahg483321 jgi|Araly1|483321|fgenesh2_kg.4__2381__AT2G42300.1 246 4e-64
> Ahg486233 jgi|Araly1|486233|fgenesh2_kg.5__2225__AT3G57800.1
Length=1836
Score = 1694 bits (917), Expect = 0.0
Identities = 1090/1170 (93%), Gaps = 26/1170 (2%)
Strand=Plus/Plus
Query 1 AGAAGACGAAGAAGAAGAGAGAATAACTA----TTCCTTCTTCGCCAAGTTCTCTGAGCT 56
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1 AGAAGAAGAAGAAGAAGAGAGAATAACTATTCCTTCCTTCTTCGCCAAGTTCTCTGAGAT 60
Query 57 ATAGAAGAAGGAGGGATTTCTTCAGACCGCCATTGTTGCCCACCTTCTCTCCTTTCTATT 116
| ||||||||||||||||||||| ||||||||||||| | |||||||| | ||| |||
Sbjct 61 AGAGAAGAAGGAGGGATTTCTTCTGACCGCCATTGTTTCTCACCTTCTTTGCTTGAGATT 120
Query 117 TTTCGCCGCATTTTACTCGCTTACTGACAAAAGTCTTCTACTCAAGtctctctctcgctc 176
|||||||||| ||| |||||||||||||||||| ||||| ||||||| |||
Sbjct 121 TTTCGCCGCAATTTGCTCGCTTACTGACAAAAG--------TCAAG--TCTCTCT--CTC 168
Query 177 tctTTGGAGGCTCAATTAGGGTTTTGTTGTC-GTGAGATTTGATTACACAAATTGCTGAA 235
||||||||||||||||||||||||||||| | ||||||||||||||| |||| |||||||
Sbjct 169 TCTTTGGAGGCTCAATTAGGGTTTTGTTG-CTGTGAGATTTGATTACGCAAACTGCTGAA 227
Query 236 TTTGGTTTCGATTATT-G-GT-----GTTATTGTTTTCGAAGATTTCCAGTGAGTTTCCG 288
|||||||||||||||| | || | | ||||||| |||||||||||||||||||| |
Sbjct 228 TTTGGTTTCGATTATTGGCGTGAGACGGTGTTGTTTTTGAAGATTTCCAGTGAGTTTCTG 287
Query 289 TTTATGGATCTGACTGGAGGATTTGGAGCTAGATCCGGCGGTGTTGGACCGTGCCGGGAA 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TTTATGGATCTGACTGGAGGATTTGGAGCTAGATCCGGCGGTGTTGGACCGTGCCGGGAA 347
Query 349 CCAATAGGCCTTGAATCGCTACATCTCGGTGACGAATTTCGGCAACTAGTGACGACTTTA 408
||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 348 GCAATAGGGCTTGAATCGCTACATCTCGGTGACGAATTTCGGCAACTGGTGACAACGTTA 407
Query 409 CCTCCCGAGAACCCCGGCGGTTCGTTCACGGCTTTGCTTGAGCTTCCACCTACACAAGCA 468
||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 408 CCTCCTGAGAACGCCGGCGGTTCTTTCACGGCTTTGCTTGAGCTTCCGCCTACACAAGCA 467
Query 469 GTGGAGCTTCTCCATTTCACTGATTCTTCGTCTTCTCAACAAGCGGCAGTGACAGGGATC 528
||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||| |||
Sbjct 468 GTGGAGCTTCTTCATTTTACTGATTCTTCGTCTTCTCAAGTGGCGGCTGTGACAGGAATC 527
Query 529 GGTGGAGAGATTCCTCCGCCGCTTCACTCTTTCGGTGGGACATTGGCTTTTCCTTCTAAC 588
|||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 528 GGTGGAGAGATTGCTCCACCGCTTCACTCTCTCGGTGGGACATTGGCTTTTCCTTCTAAC 587
Query 589 TCAGTTCTCATGGAGCGAGCAGCTCGTTTCTCGGTGATTGCCACTGAGCAACAAAACGGA 648
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 588 TCAGTTCTCATGGAGCGAGCAGCTCGGTTCTCGGTTATTGCCACTGAACAACAAAACGGA 647
Query 649 AATATCTCCGGGGAGACTCCGACGAGCTCTGTACCTTCCAATTCAAGTGCTAATCTCGAC 708
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 648 AATATCTCCGGGGAGACTCCGACGAGCTCGGTACCTTCCAATTCCAGCGCTAATCTCGAC 707
Query 709 AGAGTCAAGACGGAGCCTGCTGAGACCGATTCATCTCAGCGGTTGATTTCTGATTCAGCG 768
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 ATAGTCAAGACCGAGCCTGCTGAGACCGATTCATCTCAGCGGTTGATTTCTGATTCAGCG 767
Query 769 ATTGAGAATCAAATCCCTTGCCCTAACCAGAACAATCGAAATGGGAAGAGGAAAGATTTC 828
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 768 ATTGAGAATCAAATCCCTTGCCCTAGCCAGAACAATCGAAATGGGAAGAGGAAAGATTTC 827
Query 829 GAAAAGAAGGGTAAAAGCTCGACGAAGAAGAACAAAAGCTCTGAAGAGAACGAGAAGCTG 888
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 828 GAAAAGAAGGTTAAAAGCTCGACGAAGAAGAACAAAAGCTCCGAAGAGAACGAGAAGCTG 887
Query 889 CCATATGTTCACGTTAGAGCTCGTCGTGGTCAAGCAACCGATAGCCATAGCTTAGCAGAA 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CCATATGTTCACGTTAGAGCTCGTCGTGGTCAAGCAACCGATAGCCATAGCTTAGCAGAA 947
Query 949 CGAGCAAGAAGAGAGAAGATAAATGCACGAATGAAGCTGTTACAGGAACTGGTCCCAGGC 1008
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 948 CGAGCAAGAAGAGAGAAGATAAATGCACGAATGAAGCTGCTACAGGAACTGGTCCCAGGC 1007
Query 1009 TGTGATAAGGGGACAGATTTTGGTGGAAAGATCAAGATCAAAGTGTGTTTTGGGGTCCAT 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TGTGATAAGGGGACAGATTTTGGTGGAAAGATCAAGATCAAAGTGTGTTTTGGGGTCCAT 1067
Query 1069 CTTTTGATGATAAGTGGGAAAAAAGTTGCAATCTTTCTATGGAAGGTGAGCTGTGAGGAC 1128
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 1068 CTTTTGATGATAAGTGGGAAAAAAGCTGTAAACTTTCTATGGAAGGTGAGCTGTGAGGAC 1127
Query 1129 TTGATTGATTGTTCCTTTAGCCCCCCTAGG 1158
||||||||||||||||||| ||||| ||||
Sbjct 1128 TTGATTGATTGTTCCTTTAACCCCC-TAGG 1156
Score = 922 bits (499), Expect = 0.0
Identities = 612/661 (93%), Gaps = 30/661 (5%)
Strand=Plus/Plus
Query 1159 ATTCAAGGTACCGCGCTGGTGCTGGATGAAATCATTAACCATGTCCAGTCATTACAACGT 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ATTCAAGGTACCGCGCTGGTGCTGGATGAAATCATTAACCATGTCCAGTCATTACAACGT 1256
Query 1219 CAAGTGGAGATGCTATCAATGAGACTTGCTGCGGTAAACCCCAGAATCGACTTCAATCTC 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CAAGTGGAGATGCTATCAATGAGACTTGCTGCGGTAAACCCCAGAATCGACTTCAATCTC 1316
Query 1279 GACACCATATTGGCTTCAGAAAACGGTTCTTTAATGGATGGGAGCTTCAATGCCGCACCA 1338
||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |||||
Sbjct 1317 GACACCATATTGGCTTCAGAAAATGGTTCTTTAATGGATGGGAGTTTCAATGGCACACCA 1376
Query 1339 ATGCAGCTTGCTTGGCCTCAGCAAGCCATTGAGACCGAACAGTCCTTTCATCACCGGCAA 1398
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1377 ATGCAGCTTGCTTGGCCTCATCAAGCCATTGAGACCGAACAGTCCTTTCATCACCGGCAA 1436
Query 1399 CTGCAACAACCACCAACACAACAATGGCCTTTTGACGGCTTGAACCAGCCGGTATGGGGA 1458
|||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1437 CTGCCACCACCACCAACACAACAGTGGCCTTTTGACGGCTTGAACCAGCCGGTATGGGGA 1496
Query 1459 AGAGAAGAGGATCAAGCTCATGGCAATGATAACAGCAATTTGATGGCAGTTTCTGAAAAT 1518
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1497 AGAGAAGAGGATCAAGCTGATGGCAATGATAACAGCAATTTGATGGCGGTTTCTGAAAAT 1556
Query 1519 GTAATGGTGGCTTCTGCTAATTTGCACCCAAATCAGGTCAAAATGGAGCTGTAAGTTGGG 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 GTAATGGTGGCTTCTGCTAATTTGCACCCAAATCAGGTCAAAATGGAGCTGTAAGTTGGG 1616
Query 1579 AAAACGGTAGAGATCATGAATGTGTATATACATCGTATAAGCTCGTTTCTCTCTATATAA 1638
||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||
Sbjct 1617 AAAACAGTAGAGATCATGAATGTGTATATATATCGTATAAGCCCGTTTCTCTATATATAA 1676
Query 1639 ATATAATCATAAATATA---G-AT-A--T--CTGTTAAGAAGGTATCAGTCATTTGATTC 1689
|||||||||||||||| | || | | |||||||||||||||||||||||||||||
Sbjct 1677 TTATAATCATAAATATATAAGCATTAGATATCTGTTAAGAAGGTATCAGTCATTTGATTC 1736
Query 1690 AGAGAGACAACACTGGTATGATTGTTTCTTATTCTTGTACCAGATTTCGACAATGTAGAA 1749
|||||||||| |||||||| | | | | |||||| |||||||||||
Sbjct 1737 AGAGAGACAAAACTGGTAT-A------C-----C----A---GATTTCCACAATGTAGAA 1777
Query 1750 TTTAGTAGGATATGATCATTTTGATCTCGTTATATATATCTTACTAATAATAAATAGAGA 1809
|||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1778 TTTAGTAGAATATGATCATTTTGATCTTGTTATATAT--CTTACTAATAATAAATAGAGA 1835
Query 1810 T 1810
|
Sbjct 1836 T 1836
> Ahg483321 jgi|Araly1|483321|fgenesh2_kg.4__2381__AT2G42300.1
Length=1435
Score = 246 bits (133), Expect = 4e-64
Identities = 186/211 (88%), Gaps = 6/211 (3%)
Strand=Plus/Plus
Query 810 TGGGAAGAGGAAAGATTTCGAAAAGAAGGGT-AAAAGCTCGACGAAGAAGAACAAAAGCT 868
||| |||||||||||| ||| ||||| ||| ||||||||||||||||||| ||| ||||
Sbjct 710 TGGAAAGAGGAAAGATCGCGAGAAGAA-GGTCAAAAGCTCGACGAAGAAGACCAAGAGCT 768
Query 869 CTGAAGAGAAC-GAGAAGCTGCCATATGTTCACGTTAGAGCTCGTCGTGGTCAAGCAACC 927
| | |||| | || ||| ||||||||||||| || |||||||||||||||||||| ||
Sbjct 769 CCGCAGAG-TCAGACAAGTTGCCATATGTTCATGTCAGAGCTCGTCGTGGTCAAGCTACT 827
Query 928 GATAGCCATAGCTTAGCAGA-ACGAGCAAGAAGAGAGAAGATAAATGCACGAATGAAGCT 986
|||| ||||||||||||||| | |||||||||| ||||||||||| ||||||||||||||
Sbjct 828 GATAACCATAGCTTAGCAGAGA-GAGCAAGAAGGGAGAAGATAAACGCACGAATGAAGCT 886
Query 987 GTTACAGGAACTGGTCCCAGGCTGTGATAAG 1017
| |||||||||||||||||||||||||||||
Sbjct 887 GCTACAGGAACTGGTCCCAGGCTGTGATAAG 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68219628795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5