BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57810.2
Length=1331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486235 jgi|Araly1|486235|fgenesh2_kg.5__2227__AT3G57810.2 1709 0.0
> Ahg486235 jgi|Araly1|486235|fgenesh2_kg.5__2227__AT3G57810.2
Length=1292
Score = 1709 bits (925), Expect = 0.0
Identities = 1200/1326 (90%), Gaps = 46/1326 (3%)
Strand=Plus/Plus
Query 1 AAGCTTCTCGA--C-TTGTT-ATTGTTTCGTAGC-T-TCGTCGGTCCAACAAGACCTTGC 54
||||||||||| | || || ||||||| |||| | |||||||| ||||||||||||||
Sbjct 1 AAGCTTCTCGACTCGTTTTTGTTTGTTTCATAGCATCTCGTCGGTTCAACAAGACCTTGC 60
Query 55 GCT---AGAAGAACAGTTTCGGCTTTGTTTTGTTCAATTCTCACCTCACCCCGGACAGAG 111
||| ||||||||| |||| | |||||||||| |||||||||||| || |||| |
Sbjct 61 GCTAGAAGAAGAACAATTTCAGTTTTGTTTTGTCCAATTCTCACCT-----CGTACAGTG 115
Query 112 TCCAAAACAACGGTTTATTTCTTGCGTTTGTCGGGAAATCAGAGTTGAGTATAATAAACA 171
|| |||||||||||| ||| |||| |||||| || | | | || || |||||
Sbjct 116 ACC-AAACAACGGTTTCTTTGTTGCTTTTGTC-GG--A--A-A-TTCAG------AAACA 161
Query 172 CCCTTCACGACATTCTTTGCTTGTCCACCTTGGTATCTGAAATTGGGGGACTCTTATT-- 229
||||| || ||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 162 CCCTTGACAACATTCTTTGCTTCTCCACCTTGGTATCTGAAATTGGGAGACTCTTATTAG 221
Query 230 ATAAAAGATATGATGATTTGTTACTCTCCAATTACAACATGTTCTAGGAATGCTATCAGT 289
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 222 AAAAAAGATATGATGATTTGTTACTCTCCAATTACAACATGTTCTAGGAATGCTATCAAT 281
Query 290 ATCAAGAGGCATTTAGGCTCTCGCCTCTACGGCGTTGTGGCTCACGGATCATCTAAATTC 349
|||||| ||||||||||| ||| |||||||||||||||| |||| ||||||| |||||||
Sbjct 282 ATCAAGGGGCATTTAGGCACTCACCTCTACGGCGTTGTGACTCAAGGATCATATAAATTC 341
Query 350 TCCTGCT-ACAGTCTTTTATCAGGACTTTCAAGAAGACATTATACCGGTTTTCGTGTATC 408
||||| | |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||
Sbjct 342 TCCTG-TCACAGTCTTTTATTAGGACTTTCTAGAAGACATTACACCGGTTTTCGCGTATC 400
Query 409 GGTCTCTAATAGACCTTCTAGTTGGCACGATAAAGGACTTTTTGGGTCAGTATTGATCAA 468
|||||||||||||||||||||||||||||||||| | || | ||||||||||
Sbjct 401 GGTCTCTAATAGACCTTCTAGTTGGCACGATAAA--A-------GG-C--TATTGATCAA 448
Query 469 TCGACCAACTGTTGCTCCTAAGGAAAAGCTTGAAGTTTCTTTCTTGTCCCCTGAGGCTAA 528
|||| |||| |||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 449 TCGATCAACCGTTGGTCCTAAGGAAAAGCTTGAAGTTTCTTTCTTGTCCCCTGATGCTAA 508
Query 529 TATGAAATGCTCGAAGATAGAATCTAACATGAGAAATCTCTATTGTTATTCAAGATTTGC 588
||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 509 AATGAAATGCTCCAAGATAGAATCCAACATGAGAAATCTCTATTGGTATTCAAGATTTGC 568
Query 589 ATATACAGGTGTGATTGTTAGCTTGCTTGTTTGTTATTCTTCGACTTCCCAATCAGCGTA 648
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 569 TTATACAGGTGTGATTGTTAGCTTGCTTGTTTGTTATTCTTCAACTTCCCAATCAGCTTA 628
Query 649 CGCAGATTCTTCAAGGGATAAAGATGCTAACAACGTGCATCATCATTCGTCTGATGGTAA 708
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 629 CGCAGATGCTTCAAGGGATAAAGATGCTAACAACGTGCATAATCATTCGTCTCATGGTAA 688
Query 709 ATTCCACAATGGGAAAAGAGTTTATACTGATTACTCTATCATTGGTATTCCGGGGGATGG 768
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 689 ATTCCACAATGGGAAAAGAGTCTACACTGATTACTCTATCATTGGTATTCCGGGGGATGG 748
Query 769 CAGATGTTTGTTTCGTTCTGTAGCTCACGGATTCTGCTTACGCTCTGGGAAACTAGCTCC 828
||||| |||||||||||||||| ||||||||| | |||||||||||| ||||| |||||
Sbjct 749 TAGATGCTTGTTTCGTTCTGTAGTTCACGGATTTTACTTACGCTCTGGAAAACTGGCTCC 808
Query 829 AGGCGAGAAGATGCAGAGAGAACTCGCTGACGAATTACGTACCAGGGTTGCTGATGAGTT 888
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 809 AGGCGAGAAGATGCAGAGAGAACTTGCTGATGAATTACGTACCAGGGTTGCTGATGAGTT 868
Query 889 TATCCAAAGAAGACAGGAAACAGAATGGTTCGTGGAAGGAGATTTCGACACCTACGTCAG 948
|||| ||||||||||||||||||||||||| ||||||||||||||||| | ||||||||
Sbjct 869 TATCAAAAGAAGACAGGAAACAGAATGGTTTGTGGAAGGAGATTTCGATTCATACGTCAG 928
Query 949 ACAAATTCGGGATCCACACGTGTGGGGAGGTGAACCTGAACTCTTCATGGCTTCACACGT 1008
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 ACAAATTCGGGAGCCACACGTGTGGGGAGGTGAACCTGAACTCTTCATGGCTTCACACGT 988
Query 1009 TCTCCAGATGCCAATCACAGTGTATATGAAAGACGATAAAGCTGGAGGACTGATAAGTAT 1068
|||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| |||
Sbjct 989 TCTCCAGATGCCAATCACAGTGTATATGAAGGACGAGAAAGCTGGAGGATTGATATCTAT 1048
Query 1069 TGCAGAATATGGTCAAGAATACGGTAAAGACGACCCAATCCGAGTCCTATACCATGGTTT 1128
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1049 TGCGGAATATGGTCAAGAATATGGTAAAGACGACCCAATCCGAGTCCTATACCATGGTTT 1108
Query 1129 TGGTCATTACGATGCCCTTTTGCTTCACGAGAGTAAAGCTTCGATTCCAAAATCTAAACT 1188
|||||||||||||||||| ||| ||||||| ||||||||||| |||||||||||||||||
Sbjct 1109 TGGTCATTACGATGCCCTCTTGATTCACGAAAGTAAAGCTTCAATTCCAAAATCTAAACT 1168
Query 1189 TTAGTATACTTAGTTTTGCATCTTTGACTTTTGTCAGGTGTTGATGATGTTTTTGTTTAC 1248
|||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 1169 TTAGTAAATTTAGTTTTGCATCTTTGACTTTTGTCAGGTGATGATGATGTTTTTGTCT-C 1227
Query 1249 TGACACAACCACTATCTGTATGCCTTGTAGAATGTAACCtttttttACCTTTTACTTTGA 1308
|||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1228 TGACACAACCACAATCTATATGCCTTGTAGAATGTAACCTTTTTTTACCTTTTAATTTGA 1287
Query 1309 ATAAAA 1314
| ||||
Sbjct 1288 A-AAAA 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49788529602
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5