BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57830.1
Length=2476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486237 jgi|Araly1|486237|fgenesh2_kg.5__2229__AT3G57830.1 3395 0.0
Ahg483320 jgi|Araly1|483320|fgenesh2_kg.4__2380__AT2G42290.1 990 0.0
> Ahg486237 jgi|Araly1|486237|fgenesh2_kg.5__2229__AT3G57830.1
Length=2401
Score = 3395 bits (1838), Expect = 0.0
Identities = 2255/2445 (92%), Gaps = 74/2445 (3%)
Strand=Plus/Plus
Query 40 CCAACACTTTTTAAGCTCCCACAAGAATTCAAAAAACTTTCCTATGTCTACATTACAACC 99
||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 23 CCAACAC-TTTTAAGCT--CACAAGAATTCAAAAAACTTTCCCATGTCTACATTACAACC 79
Query 100 ACGTTGCTACTTTGGAACCCCATCACCCTAATTCctctctttcgtcttcttcttccctcg 159
||||||||||||||| || | | | |||||||||||| | ||
Sbjct 80 ACGTTGCTACTTTGG--------------AA---C-C-C-TTCGTCTTCTTC-T---TC- 114
Query 160 tctctctctctcCGCAACTCCTCGTTGCATCACTTTACATTGAAACATAATCTGTAGATA 219
| ||||||||| |||||||||||||||||||| || || ||||||||||||| ||||||
Sbjct 115 T-TCTCTCTCT--GCAACTCCTCGTTGCATCAC-TTGCA-TGAAACATAATCTTTAGATA 169
Query 220 TTAAACAAAGTCTT-TTGCAAGATTCTGATTCTCT--AGACAAATATGCAGTttcttcga 276
|||||| |||| || || ||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 170 TTAAAC-AAGT-TTCTTTCAAGATTCTGATTCTCTCCAGA-AAA-ATGCAGTTTCTTCGA 225
Query 277 cttcttacacttcttgtttcttcctacttcttcttcttcatcaacttctCCTCCTCACTG 336
|||||| ||||||| ||||||||||||| | ||||||||| | ||||||||| || |||
Sbjct 226 CTTCTTTCACTTCTCCTTTCTTCCTACTTGTCCTTCTTCATTAGCTTCTCCTCGTCGCTG 285
Query 337 AATCCAGATGGGTTGTCTCTACTTGCTCTCAAATCCGCAATC-TTACGAGACCCGACACG 395
| ||| ||||| || || || ||||||||||||||||| ||| ||| ||||||||||||
Sbjct 286 AGTCCCGATGGTTTATCACTTCTTGCTCTCAAATCCGCCATCTTTA-AAGACCCGACACG 344
Query 396 TGTAATGACTTCCTGGTCTGAGTCCGACCCGACTCCATGTCACTGGCCTGGAATCATCTG 455
||| |||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 345 TGTGATGACTTCCTGGTCCGAATCCGACCCGACTCCGTGTCACTGGCCTGGAATCATCTG 404
Query 456 CACACATGGCCGAGTCACCTCACTCGTTCTCTCCGGAAGAAGACTCTCAGGTTACATACC 515
||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 405 CACTCACGGCCGAGTCACCTCACTCGTTCTTTCCGGAAGAAGACTATCAGGTTACATACC 464
Query 516 CTCTAAACTCGGTCTACTCGACTCACTCATAAAACTCGACCTTGCTCGTAACAATTTCTC 575
||| |||| ||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 465 CTCCGAACTTGGTTTACTCGACTCACTCATAAAACTCGACCTTGCTCGCAACAATTTCTC 524
Query 576 AAAACCAGTGCCGACTCGTCTCTTCAACGCCGTTAATCTCCGTTACATTGATCTCTCTCA 635
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 AAAACCAGTTCCTACTCGTCTCTTCAACGCCGTTAATCTCCGTTACATTGATCTCTCTCA 584
Query 636 CAACTCAATCTCCGGCCCAATTCCGGCCCAAATCCAATCCCTCAAGAATCTCACTCACAT 695
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 585 CAACTCAATCTCCGGCCCAATTCCGGCCCAAATCCAATCCATCAAGAATCTCACTCACAT 644
Query 696 TGATTTCTCCTCCAATCTACTCAACGGTTCACTCCCTCAGTCACTCACTCAACTCGGAAG 755
|||||||||||||||||| |||||||| ||||||||| |||||||||||| |||||||||
Sbjct 645 TGATTTCTCCTCCAATCTCCTCAACGGGTCACTCCCTGAGTCACTCACTCTACTCGGAAG 704
Query 756 CTTAGTCGGCACACTCAATCTCTCTTACAACAGTTTCTCCGGCGAAATTCCGCCGTCGTA 815
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 705 CTTAGTCGGCACACTCAATCTCTCTTACAACAGATTCTCCGGCGAAATCCCGCCGTCGTA 764
Query 816 TGGCCGTTTTCCAGTCTTT-GTCAGCTTAGATCTCGGCCACAATAATCTCACCGGAAAAA 874
||| || ||||| || ||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 765 TGGACGGTTTCCGGT-TTTCGTCAGCTTGGATCTCGGCCACAATAATCTCACCGGAAAAA 823
Query 875 TACCTCAGATTGGCTCTCTCTTAAACCAAGGACCAACAGCGTTCGCCGGAAACTCTGAGC 934
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 824 TACCTCAGATTGGCTCTCTCTTAAACCAAGGACCAACCGCGTTCGCCGGAAACTCTGATC 883
Query 935 TCTGTGGTTTCCCATTACAGAAGCTGTGTAAAGATGA-AGGTACGAACCCTAAGCTCGTC 993
||||||||||||||||||| ||||| |||||||| || | ||| || ||||||||||||
Sbjct 884 TCTGTGGTTTCCCATTACAAAAGCTATGTAAAGAAGATA-CTACAAATCCTAAGCTCGTC 942
Query 994 GCTCCAAAACCAGAAGGCTCGCAAATCCTCCCGAAGAAACCAAACCCTAGCTTCATCGAC 1053
||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 943 GCTCCAAAACCTGAAGGCTCACAAATCCTCCCGAAGAGACCAAACCCTAGCTTCATCGAC 1002
Query 1054 AAGGACGGAAGAAAGAATAAACCGATCACCGGATCCGTAACGGTTTCTCTCATCTCCGGA 1113
||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||
Sbjct 1003 AAGGACGGAAGAAAGAATAAACCGACCACCGGATCAGTAACGGTATCTCTCATCTCCGGA 1062
Query 1114 GTCTCAATCGTAATCGGAGCAGTTTCTATCTCCGTATGGCTGATTCGAAGAAAATTAAGC 1173
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1063 GTCCCAATCGTAATCGGAGCTGTTTCTATCTCCGTATGGCTGATTCGAAGAAAATT--G- 1119
Query 1174 TCCACTGTGAGTACACCGGaaaaaaaCAACACGGCGGCGCCATTGGATGATGCGGCGGAT 1233
| | | | | |||| | ||| ||||||||||||||||| | ||| |||
Sbjct 1120 ---A--G-CA--A-ATCGGAGAGAAAGAACACGGCGGCGCCATT-G--GAT------GAT 1161
Query 1234 GAGGAGGAGAAGGAAGGTAAATTCGTGGTGATGGACGAAGGATTCGAGCTCGAGCTCGAG 1293
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1162 GAGGAGGAGCAGGAAGGTAAATTTGTGGTGATGGACGAAGGATTCGAGCTCGAGCTCGAG 1221
Query 1294 GATTTGCTGAGAGCATCGGCTTACGTCGTCGGAAAGAGCAGAAGTGGGATTGTGTACAGA 1353
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1222 GATTTGCTGAGAGCATCGGCTTACGTCGTTGGAAAGAGCAGAAGTGGGATTGTGTACAGA 1281
Query 1354 GTAGTGGCCGGAATGGGATCAGGTACAGTGGCGGCTACGTTTACGTCATCCACCGTCGTT 1413
|||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct 1282 GTAGTGGCCGGAATGGGATCGGGTACAGTGGCGGCGACGTTTACGTCATCCGCCGTCGTT 1341
Query 1414 GCTGTGAGAAGGCTAAGCGACGGAGATGCCACGTGGCGGCGGAAGGATTTCGAAAATGAA 1473
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 GCTGTGAGAAGGCTCAGCGACGGAGATGCCACGTGGCGGCGGAAGGATTTCGAAAATGAA 1401
Query 1474 GTGGAGGCTATAAGTAGAGTCCAACATCCAAATATCGTACGGCTAAGAGCTTATTACTAT 1533
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 GTGGAGGCTATAGGTAGAGTCCAACATCCAAATATCGTACGGCTAAGAGCTTATTACTAT 1461
Query 1534 GCTGAGGACGAGAGGCTCTTGATCACTGATTACATACGCAACGGCAGCTTGTACTCTGCC 1593
||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1462 GCTGAAGATGAGAGGCTCTTGATCACTGATTACATACGCAACGGGAGCTTGTACTCTGCC 1521
Query 1594 TTACATGGTGGACCCTCGAATACTCTGCCTTCACTCTCTTGGCCTGAAAGATTACTTATT 1653
|||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1522 TTACATGGTGGACCTTCGAATACTCTGCCTTCACTCTCTTGGCCTGAGAGGTTACTTATT 1581
Query 1654 GCACAAGGAACAGCTCGTGGCTTGATGTATATACATGAGTACAGCCCAAGAAAGTACGTT 1713
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1582 GCACAAGGAACTGCTCGTGGCTTGATGTATATACATGAGTACAGCCCGAGAAAGTACGTT 1641
Query 1714 CATGGCAACCTGAAATCAACCAAAATCCTGCTTGATGATGAATTACTGCCTCGCATCTCA 1773
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1642 CATGGCAACCTGAAATCAACCAAAATCCTGCTTGATGACGAATTACAGCCTCGCATCTCA 1701
Query 1774 GGCTTCGGTCTTACACGTTTGGTATCAGGTTACTCCAAACTCATCGGTTCGCTATCCGCC 1833
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1702 GGCTTCGGTCTTACACGTTTGGTCTCAGGTTACTCCAAACTCACCGGTTCGCTATCCGCC 1761
Query 1834 ACAAGGCAAAGCTTAGACCAAACCTACTTAACCTCTGCTACAACGGTGACAAGAATCACA 1893
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1762 ATAAGGCAAAGCTTAGACCAAACCTACTTAACCCCTGCTACAACGGTGACAAGAATCACA 1821
Query 1894 GCTCCCACTGTTGCTTACCTTGCACCTGAGGCTCGGGCTTCTTCTGGTTGCAAATTATCT 1953
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1822 GCTCCCTCTGTTGCTTACCTTGCACCTGAGGCTCGAGCTTCTTCTGGTTGCAAATTATCT 1881
Query 1954 CAGAAGTGCGATGTCTATTCGTTTGGGGTTGTCCTAATGGAGTTGTTGACTGGCCGTTTG 2013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1882 CAGAAGTGCGATGTCTATTCGTTTGGGGTTGTCCTAATGGAGTTGTTGACTGGCCGTTTG 1941
Query 2014 CCCAATGCTTCCTCTAAAAACAATGGCGAAGAACTCGTGCGTGTTGTGAGGAACTGGGTC 2073
||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1942 CCCAATGGTTCCTATAAAAACAATGGCGAAGAACTAGTGCATGTTGTGAGGAACTGGGTC 2001
Query 2074 AAGGAAGAGAAGCCGTTGAG-TGAGATTTTAGACCCGGAGATTCTGAACAAAGGTCACGC 2132
|| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 2002 AAAGAAGAGAAGCCGTTG-GCTGAGATTTTAGACCCGGAGATTCTGAACAAAGGTCACGC 2060
Query 2133 AGATAAGCAAGTTATTGCAGCCATTCATGTCGCCTTGAACTGCACGGAAATGGATCCAGA 2192
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2061 AGATAAGCAAGTTATTGCAGCCATTCATGTTGCCTTAAACTGCACGGAAATGGATCCAGA 2120
Query 2193 GGTTCGTCCGAGGATGAGATCAGTGTCTGAGAGTCTCGGCCGGATCAAATCGGACTGAGC 2252
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 2121 GGTTCGTCCGAGGATGAGATCAGTGTCTGAGAGTCTCGGCCGAATCAAATCGGTCTGAGC 2180
Query 2253 ACGTT-CGAGGGAACTCAGAAAGTAAGTTAGAAATGTTGCAATTCCGTTGAGTGTAAAAT 2311
|||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 2181 TCGTTTCGAGGTAACTCAGAAAGTAAGTTAGAAATTTTGCAATTCCGTCGAGTGTAAAAT 2240
Query 2312 TCATGCACCATCATGTTTTGCTTCTCAATGAGTAGTATATTTTTGGCATGTTGTAGGGTT 2371
|||||||||||||||||||||||||| |||||| | | |||| ||||||||||||||||
Sbjct 2241 TCATGCACCATCATGTTTTGCTTCTCTATGAGT-G-AG-TTTT-GGCATGTTGTAGGGTT 2296
Query 2372 TAGGGATCATGATCATCATGTAGCCACTCTCCTTTGTTATACATTTGTAACGGATGAAGG 2431
|||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 2297 TAGGGATCCTGATCATCATGTAGTCACTCTCCTTTGTTGTACATTTGTAATAGATGAAGG 2356
Query 2432 AAAGTACTTGATTGTTTCTTGGGTTTAACATATAAGCCTTGACCC 2476
| ||||||| |||||||||||| |||||||| |||||||||||||
Sbjct 2357 ACAGTACTTCATTGTTTCTTGGTTTTAACATTTAAGCCTTGACCC 2401
> Ahg483320 jgi|Araly1|483320|fgenesh2_kg.4__2380__AT2G42290.1
Length=2144
Score = 990 bits (536), Expect = 0.0
Identities = 1559/2026 (77%), Gaps = 177/2026 (9%)
Strand=Plus/Plus
Query 284 cacttcttgtttcttcctacttc-ttcttcttcatcaacttctCCTCCTCACTGAA-TCC 341
||||||||||||||||| | || ||| ||| ||| | ||| | ||| || || || |||
Sbjct 143 CACTTCTTGTTTCTTCC-A--TCTTTC-TCTGCATTAGCTTTTGCTCTTCTCTCAATTCC 198
Query 342 AGATGGGTTGTCTCTACTTGCTCTCAAATCCGCAATCTTACGA-GACCCGACACGTGTAA 400
|| || || |||||||| ||||| |||||||| || | | |||||||| || ||||
Sbjct 199 -GACGGTTTATCTCTACTAGCTCTAAAATCCGCCGTC-GATAACGACCCGACCCGAGTAA 256
Query 401 TGACTTC-CTGGTCTGAGTCCGACCCGACTCCATGTCACTGG-CCTGGAATCATCTGCAC 458
|||| || ||||||||| |||||||||||||| || || ||| || |||||| | |||||
Sbjct 257 TGAC-TCACTGGTCTGAATCCGACCCGACTCCTTGCCATTGGTCC-GGAATCGTTTGCAC 314
Query 459 ACATGGCCGAGTCACCTCACTCGTTCTCTCCG-GAAGAAGACTCTCAGGTTACATACCCT 517
| | ||||||||||| ||||| || |||| || ||| ||| ||||| |||||||| || |
Sbjct 315 AAAGGGCCGAGTCACTTCACTTGTCCTCTTCGCGAA-AAGTCTCTCCGGTTACATTCCAT 373
Query 518 CTA-AACTCGGTCTACTCGACTCACTCATAA--AACTCGACCTTGCTCGTAACAATTTCT 574
| | |||||||| ||||| |||| || ||| || || || |||| ||||||||||
Sbjct 374 C-AGAACTCGGTTTACTCAACTCGCT--TAACCGGCTTGATCTAGCTCACAACAATTTCT 430
Query 575 -CAAAACCAGTGCCGACTCGTCTCTTC-AACGCCGTTAATCTCCGTTACATTGATCTCTC 632
||||||| || ||| ||| |||||| || || || ||||| ||||| ||||||||
Sbjct 431 CCAAAACC-GTACCGGTTCGACTCTTCGAA-GCAACCAAGCTCCGGTACATCGATCTCTC 488
Query 633 TCACAACTCAATCTCCGGCCCAATTCCGGCCCAAATCCAATCCCTCAAGAAT--CTC-AC 689
|||||||||| |||||||||||||||||||||||||| ||||| | | ||| ||| ||
Sbjct 489 TCACAACTCACTCTCCGGCCCAATTCCGGCCCAAATCAAATCCAT-GA-AATCACTCAAC 546
Query 690 TCACATTGATTTCTCCTCCAATCTA-CTCAACGGTTCACTCCCTCAGTCACTCACTCAAC 748
||| ||||| |||||||||||| | |||||||| ||||||||| | | || ||
Sbjct 547 -CACCTTGATATCTCCTCCAATC-ATCTCAACGGGTCACTCCCT--G------AGTC-AC 595
Query 749 TCGGAAGCTTAGTCGGCACAC-TCAATCTCTCTTACAA-CAGTTTCTCCGGCGAAATTCC 806
||| |||| | ||||| || | | |||||||||| || || ||| ||||||| |||||
Sbjct 596 TCGAAAGCCTCGTCGGAAC-CTTAAATCTCTCTTTTAACCA-ATTCACCGGCGAGATTCC 653
Query 807 GCCGTCGTATGGCCGTTTTCCAGTCT-TTGTCAGCTTAGATCTCGGCCACAATAATCTCA 865
|||||||| || || ||||||| || || ||||||||| | | || || |||||||
Sbjct 654 ACCGTCGTACGGTCGATTTCCAG-CTCACGTAAGCTTAGATTTTAGTCAAAACAATCTCA 712
Query 866 CCGGAAAAATACCTCAGATTGGCTCTCTCTTAAACCAAGGACC-AACAGCGTTCGCCGGA 924
|||||||| |||||||| | || ||||| || ||||||||||| ||| || ||||| |||
Sbjct 713 CCGGAAAAGTACCTCAGGTGGGATCTCTGTTGAACCAAGGACCAAAC-GCATTCGCTGGA 771
Query 925 AACTCTGAGCTCTGTGG-TTTCCCATTACAGAA-GCTGTGTAAAGATGAAGGTACG-AA- 980
|||| | | |||||||| ||| ||||| || || | ||| |||| || | || ||
Sbjct 772 AACTATCATCTCTGTGGCTTT-CCATTGCA-AACACCGTGCGAAGA--AA--T-CGAAAC 824
Query 981 CCCTAAGCTCGTCGCTCCAAAACCAGAAGGCTCGCAA-ATCCTCCCGAAGAAACCAAACC 1039
|||||| ||| | | |||| || || || | ||| | || || ||||||||||||
Sbjct 825 CCCTAATTTCGCCAATGCAAAGCCGGAGGGAACTCAAGA-ACT-CC--AGAAACCAAACC 880
Query 1040 CTAGCT-TCATCGA-CAA-G--GACG-GAAG-A-AAGAATAAACCGATCACCGGATCCGT 1091
|||| | | ||| | ||| | |||| ||| | ||||| | | |||||||||||| ||
Sbjct 881 CTAG-TCTAATC-AGCAATGACGACGCAAAGCAGAAGAAGCAGCAGATCACCGGATCAGT 938
Query 1092 AACGGTTTCTCTCATCTCCGGAGTCTCAATCGTAATCGGAGCAGTTTCTATCTCCGTATG 1151
||| || ||| | || || ||||| || | ||||||||||| |||||| |||| |||||
Sbjct 939 AACAGTGTCTTTGATTTCTGGAGTATCGGTTGTAATCGGAGCTGTTTCTGTCTCGGTATG 998
Query 1152 G---CTGATTCGAAGAAAATTAAGCTCC-ACTGTGAGTAC--ACCGGa-a-aaaaaCAAC 1203
| ||||| || |||||| ||||||| || | | |||| | |||| | || || ||
Sbjct 999 GCTTCTGATCCGGAGAAAACGAAGCTCCAAC-G-G-GTACAAATCGGAGACGAAGACGAC 1055
Query 1204 -ACGGCGGCGCCATTGGATGATGCGGCGGATGAGGAGGAG-AAGGAAGGTAAATTCGTGG 1261
|||| || || || | | | | || || ||| | || |||||||||||||| |
Sbjct 1056 GACGGTGGTTTCA---GA-G-TTTGAC-GA--AGAAGG-GCAA-GAAGGTAAATTCGTAG 1105
Query 1262 TGATGGACGAAGGATTCGAGCTCGAGCTCGAGGATTTGCTGAGAGCATCGGCTTACGTCG 1321
| | ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
Sbjct 1106 CGTTTGACGAAGGATTCGAGCTCGAGCTTGAGGATTTGCTGGGAGCATCGGCTTACGT-G 1164
Query 1322 -TCGGAAAGAGCAGAAGTGGGATTGTGTACAGAGTAGTGGCCGGAATGGGATCAGGTACA 1380
| || ||||||||||||||||||||||||||||||||||| || || ||| | | |
Sbjct 1165 ATAGGCAAGAGCAGAAGTGGGATTGTGTACAGAGTAGTGGC-GGC--GGAATC-G-TCC- 1218
Query 1381 GTGGCGGCTACGTTTACGTCATCCACCGTCGTTGCTGTGAGAAGGCT-AAGCGACGGAGA 1439
| | | || | || | |||| | | | |||||||| || |||||| ||
Sbjct 1219 -T--C--C-AC-T----GT--T-----GTCGCCG-T-T-AGAAGGCTCAA-CGACGGCGA 1256
Query 1440 TGCCACGTGGCGGCGGAAGGATTTCGAAAATGAAGTGGAG-GCTATAAGTAG-AGTCCAA 1497
||| ||||||||| |||||||| | |||||||| ||| || || |||| | || ||
Sbjct 1257 TGCTACGTGGCGGTTTAAGGATTTTGTGAATGAAGTTGAGAGC-ATTGGTAGGA-TC-AA 1313
Query 1498 -CATCCAAATATCGTACGGCTAAGAGCTTATTACTATGCTGAGGACGAGAGGCT-CTTGA 1555
|| || || ||||||||||| |||||||| |||||||| |||||||||| ||| || |
Sbjct 1314 TCACCCTAACATCGTACGGCTTAGAGCTTACTACTATGCAGAGGACGAGAAGCTTCTC-A 1372
Query 1556 TCACTGATTACAT-ACGCAACGGCAGCTTGTACTCTGCCTTACATGGTGGACCCTCGAAT 1614
||||||||| ||| | |||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 1373 TCACTGATTTCATTA-GCAATGGCAGCTTGTACTCTGCCTTACATGGTGGACCTTTGAAT 1431
Query 1615 ACTCTGCCTTCACTCTCTTGGCCTGAAAGATTACT-TATTGCACAAGGAACAGCTCGTGG 1673
|||| |||| ||||||||||| |||| || ||| | ||| || |||||||| ||||| ||
Sbjct 1432 ACTCGGCCTACACTCTCTTGGGCTGAGAGGTTA-TGTATAGCTCAAGGAACTGCTCGGGG 1490
Query 1674 CTTGATGTATATACATGAGTACAGCCCAAGAAAGTACGTTCATGGCAACCTGAAATCAAC 1733
||||||||||||||||| ||||| | |||||||| || || |||||||| |||||||
Sbjct 1491 TTTGATGTATATACATGAATACAGTTCGAGAAAGTATGTACACGGCAACCTAAAATCAAG 1550
Query 1734 CAAAATCCTGCTT-GATGATGAATTAC-TGCCTCGCATCTCAGGCTTCGGTCTTACACGT 1791
|||||||||| || ||| |||| | | | |||| ||||||||| || ||||| ||||||
Sbjct 1551 CAAAATCCTG-TTAGATAATGAGCTGCAT-CCTCACATCTCAGGATTTGGTCTCACACGT 1608
Query 1792 TTGGTATCAGGTTACTCC-AAACTC-ATCGGT--T-CGCTATCCGCCACAAGGCAAAGCT 1846
|||| || ||||| ||| ||| | || | | | | | ||| ||| || |||||||
Sbjct 1609 CTGGTTTCCGGTTA-TCCCAAAGTTGAT-GATCATTCACCATCAACCAAAACGCAAAGCA 1666
Query 1847 TAGACCAAACCTACTTAACCTCTGCTACAACGG-TGACAAGAATCACAGCTCCCACTGTT 1905
||||||| | | || | || |||| || | || | || ||||||| | | |
Sbjct 1667 AAGACCAAGC--A-TT----T--GCCACAA-GGCTCTCA-G--TCTCAGCTCCTGCAGCT 1713
Query 1906 GCTTACCTTGCACCTGAGGCTCGGGCTTCTTCTGGTTGCAAATTATCTCAGAAGTGCGAT 1965
| |||||||||||| || || || | ||| ||||||||||||| || |||||| ||||||
Sbjct 1714 GTTTACCTTGCACCCGAAGCCCGAGTTTCATCTGGTTGCAAATCATTTCAGAAATGCGAT 1773
Query 1966 GTCTATTCGTTTGGGGTTG-TCCTAATGGAGTTGTTGACTGGCCGTTTGCCCAATGCTTC 2024
|| ||||| |||||||| | | ||| |||||||||||||||| || || || |||| |||
Sbjct 1774 GTTTATTCATTTGGGGT-GATTCTATTGGAGTTGTTGACTGGTCGATTACCTAATGGTTC 1832
Query 2025 CTCTAAAAAC-AATGGCGAAGAACTCGTGCGTGTTGTGAGGAACTGGGTCAAGGAAGAGA 2083
|||| ||||| || || |||||||||||| |||| ||||||| ||| |||||||||||
Sbjct 1833 CTCTGAAAACGAA-GGAGAAGAACTCGTGAATGTTTTGAGGAATTGGCACAAGGAAGAGA 1891
Query 2084 -AGCCGTTGAG-TGAGATTTTAGACCCGGAGATTCTGAACAAAGG-TCACGCAGATAAGC 2140
| | |||| | |||||| |||||||| || ||||||| | ||| | || |||||||
Sbjct 1892 GATC-GTTG-GCTGAGATCTTAGACCCAAAGCTTCTGAA-ACAGGATTTTGCGGATAAGC 1948
Query 2141 AAGTTATTGCAGCCATTCATGTCGCCTTGAACTGCACGGAAATGGATCCAGAGGTTCGTC 2200
| ||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 1949 AGGTTATTGCAACCATTCATGTCGGTTTGAACTGCACGGAAATGGATCCAGATATGCGTC 2008
Query 2201 CGAGGATGAGATCAGTGTCTGAGAGTCTCGGCCGGATCAAATCGGA 2246
| ||||||||||| |||||||| | ||| || |||||||||| |||
Sbjct 2009 CTAGGATGAGATCTGTGTCTGAAATTCTAGGTCGGATCAAATAGGA 2054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93321100250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5