BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57840.1
Length=465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938769 jgi|Araly1|938769|scaffold_502960.1 460 3e-129
> Ahg938769 jgi|Araly1|938769|scaffold_502960.1
Length=505
Score = 460 bits (249), Expect = 3e-129
Identities = 406/478 (85%), Gaps = 26/478 (5%)
Strand=Plus/Plus
Query 1 ATGGCTTCCCAAAGAAAACTGATAATGGTTGTGATACTATCGTCGTTGCTCATGAAAGTA 60
||||||||||| ||||| ||||||||| |||| | |||| ||||||||||||||||||
Sbjct 21 ATGGCTTCCCATAGAAATCTGATAATGCTTGTCACACTA---TCGTTGCTCATGAAAGTA 77
Query 61 GCATTATCTCAATACGGTGTAGTGATGGGTAAGAGTATATTCAAATGGGAATTTTTTCC- 119
|| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 78 GCGTTATCTCAAAACGGTGTAGTGATGGGTAAGAATATATTCAAATGGGAATTTTTTCCG 137
Query 120 AATGATATCTGTATACATCACAAACGATATCGGAGGTGGTTTGGTGCTACATTCTGGTTG 179
|| |||| ||||||| || | |||||||||| |||| | |||| ||||||||| ||||
Sbjct 138 AA-AATATTTGTATACGTCTCCAACGATATCGAAGGTAGATTGGACCTACATTCTAGTTG 196
Query 180 TTA-T-ACTAGCAGAAAT-GGGTATCGTCGTATTA--GA-GACTT--TTTT-CCAGGGAG 230
| | | | | ||||| ||| || ||| ||| || || || |||| || ||| |
Sbjct 197 -CATTGA-GAACGGAAATACGGTTTC-TCG--TTACCGAGGA-TTAATTTTACCGGGGCG 250
Query 231 TATG-AAA-ATATTCGCTGAATTCAGGAAAACTTACTGGGGACGAACTCGCTATCATTGT 288
|| | ||| | ||||| | | |||| |||||||| ||||||| ||| ||||||| ||||
Sbjct 251 TA-GTAAAGA-ATTCGTTCATTTCACGAAAACTTTCTGGGGAGGAAATCGCTATGTTTGT 308
Query 289 GAATTTAGATTTGGAGATGAAACACAAATACATCGTTTTTCTCTTTATAAAGATATCAGA 348
|||||||||||||| | ||||||||||| |||||||||| || |||||| ||||| ||||
Sbjct 309 GAATTTAGATTTGGGGGTGAAACACAAACACATCGTTTTACTATTTATAGAGATAGCAGA 368
Query 349 GATAATATTGACAAATATCAGTGCAGACACTGTTTTTGGTCCATCAGAAGGAATGGACCT 408
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 369 GATAATATTGACAAATATCAGTGCAGAAACTGTTTTTGGTCCATCAGAAGGAATGGACCT 428
Query 409 TGTGCTCTTAATTCACATACTGGAAA-ATATGATATTTGTTATGCTTGGGATAAATAA 465
|||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||
Sbjct 429 TGTGCTTTTAATTCACATACTG-AAAGATATGATATTTGTTATGCTTGGGATAGATAA 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16826614749
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5