BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57860.1
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324277 jgi|Araly1|324277|fgenesh1_pm.C_scaffold_5001821 987 0.0
> Ahg324277 jgi|Araly1|324277|fgenesh1_pm.C_scaffold_5001821
Length=750
Score = 987 bits (534), Expect = 0.0
Identities = 683/752 (91%), Gaps = 22/752 (3%)
Strand=Plus/Plus
Query 116 ATGCCAGAAGCAAGAGATCGAACCGAGAGGCCTGTGGATTACT-CGACTATATTTGCCAA 174
||||||||||||||||| |||| |||||||||||||||||| | || ||||||||| |||
Sbjct 1 ATGCCAGAAGCAAGAGACCGAATCGAGAGGCCTGTGGATTA-TCCGGCTATATTTGTCAA 59
Query 175 CCGACGGAG-ACATGGTATTTTACTTGACGAGCCAGATTCACGGCTTAGTTTGATTGAAT 233
| |||| || | | ||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 60 CAGACGCAGTA-ACGGTGTGTTACTTGACGAGCCAGATTCACGGCTTAGTTTAATTGAAT 118
Query 234 CTCCGGTGAATCCAGATATTGGGTC--T---------A---TTGG-TGGAACGGGCGGGC 278
|||||||||||||||| | |||||| | | |||| |||||| |||||||
Sbjct 119 CTCCGGTGAATCCAGAAACTGGGTCAATGGGACGAGGATCTTTGGTTGGAACAGGCGGGC 178
Query 279 TTGTGAGAGGCAATTTCACTACATGGAGGCCTGGTAATGGCAGAGGTGGTCACACTCCAT 338
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||
Sbjct 179 TTGTGAGAGGCAATTTCAGTACATGGAGGCCTGGTAATGGTAGAGGTGGTCACAGTCCAT 238
Query 339 TTAGATTGCCACAGGGAAGAGAG---AATATGCCCATAGTGACCGCTAGGCGTGGAAGAG 395
|||||||| |||||||||||||| ||||||||||| ||| | |||||||||| |||||
Sbjct 239 TTAGATTGTCACAGGGAAGAGAGAATAATATGCCCATGGTGTCTGCTAGGCGTGTAAGAG 298
Query 396 GTGGTGGTTTGTTGCCTTCTTGGTATCCAAGAACACCTCTACGCGACATAACTCATATTG 455
|| | |||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 299 GTCCTAGTTTGTTGCCTTCTTGGTATCCTAGAACACCTCTACGTGATATAACTCATATTA 358
Query 456 TGCGGGCTATTGAGAGAAGAAGAGGAGCTGGGACTGGAGGAGACGATGGCCGAGTTATTG 515
||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||
Sbjct 359 TGCGGGCTATTGAGAGAAGAAGAGGAGCTGGGATTGGAAGAGACGATGGCCGAGATATTG 418
Query 516 AGATCCCAACTCATCGACAAGTTGGTGTTCTTGAATCTCCAGTACCACTGTCAGGAGAAC 575
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGATCCCAACTCAACAACAAGTTGGTGTTCTTGAATCTCCAGTACCACTGTCAGGAGAAC 478
Query 576 ACAAATGCTCGATGGTCACTCCTGGACCATCTGTGGGATTCAAGCGTAGTTGCCCACCAT 635
|||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 479 ACAAATGCTCAATTGTGACTCCTGGTCCATCTGTGGGATTCAAGCGTAGTTGCCCACCAT 538
Query 636 CAACTGCTAAAGTTCAAAAGATGTTACTTGACATCACTAAAGAGATAGCTGAGGAAGAAG 695
||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 CAACTGCTAAAGTCCATAAGATGTTGCTTGACATCACTAAAGAGATAGCTGAGGAAGAAG 598
Query 696 CTGGCTTCATCACACCCGAGAAGAAGCTACTCAATTCTATTGACAAAGTTGAGAAAATTG 755
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CAGGCTTCATCACACCCGAGAAGAAGCTACTCAATTCTATTGACAAAGTTGAGAAAATTG 658
Query 756 TGATGGCGGAGATCCAGAAGTTGAAGAGCACTCCTCAAGCTAAAAGGGAAGAGCGGGAGA 815
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 TGATGGCCGAGATCCAGAAATTGAAGAGCACTCCTCATGCTAAAAGGGAAGAGCGGGAGA 718
Query 816 AGAGGGTGCGGACTTTAATGACTATGCGATGA 847
||||||| |||||||||||| | |||||||||
Sbjct 719 AGAGGGTACGGACTTTAATGTCAATGCGATGA 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47806137918
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5