BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57870.1
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486239 jgi|Araly1|486239|fgenesh2_kg.5__2231__AT3G57870.1 1435 0.0
> Ahg486239 jgi|Araly1|486239|fgenesh2_kg.5__2231__AT3G57870.1
Length=896
Score = 1435 bits (777), Expect = 0.0
Identities = 860/898 (96%), Gaps = 14/898 (2%)
Strand=Plus/Plus
Query 1 GATagagattggagagcgagcgagacaaatc-----aga-agagagagatttagatattg 54
||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1 GATAGAGATTGGAGAGCGAGCGAGACAAATCAGAAGAGAGAGAGAGAGATTGAGATATTG 60
Query 55 tagagtgagattctaaagagagagagagagagagaTATGGCTAGTGGAATCGCTCGTGGT 114
|||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TAGAGTGAGATTCT-AA-AGAGAGAGACAGAGAGATATGGCTAGTGGAATCGCTCGTGGT 118
Query 115 CGTTTAGCTGAAGAGAGGAAATCGTGGAGGAAGAATCATCCTCATGGTTTTGTGGCAAAG 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CGTTTAGCTGAAGAGAGGAAATCGTGGAGGAAGAATCATCCTCATGGTTTTGTGGCAAAG 178
Query 175 CCGGAGACGGGGCAGGATGGAACTGTGAATCTAATGGTGTGGCATTGCACTATACCTGGT 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CCGGAGACGGGGCAGGATGGAACTGTGAATCTAATGGTGTGGCATTGCACTATACCTGGT 238
Query 235 AAAGCTGGGACTGATTGGGAAGGTGGATTCTTTCCATTAACGATGCACTTCAGTGAGGAT 294
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 239 AAAGCTGGGACTGATTGGGAAGGTGGATTCTTCCCATTAACGATGCACTTCAGTGAGGAT 298
Query 295 TATCCGAGCAAACCTCCGAAATGTAAATTTCCACAAGGGTTTTTCCACCCTAATGTCTAT 354
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 299 TATCCGAGCAAACCTCCGAAATGCAAATTCCCACAAGGGTTTTTCCACCCTAATGTCTAT 358
Query 355 CCATCTGGAACTGTCTGTCTCTCTATCCTTAACGAGGATTATGGATGGAGACCAGCCATC 414
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 359 CCATCTGGAACTGTCTGTCTCTCCATCCTTAACGAGGATTACGGGTGGAGACCAGCCATC 418
Query 415 ACCGTGAAGCAGATTCTTGTTGGTATTCAGGATTTACTTGACACACCGAATCCCGCTGAC 474
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 419 ACCGTGAAGCAGATTCTTGTTGGTATTCAGGATTTACTTGACACACCTAATCCCGCTGAC 478
Query 475 CCTGCACAGACAGATGGTTATCATCTCTTCTGTCAGGATCCAGTTGAGTACAAGAAAAGG 534
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 479 CCTGCACAGACTGATGGTTATCATCTTTTCTGTCAGGATCCAGTTGAGTACAAGAAAAGG 538
Query 535 GTGAAGCTGCAGTCCAAGCAGTATCCTGCTCTTGTCTAAAACCTCAAAAAAGAGAACGCA 594
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 539 GTGAAGCTGCAGTCCAAGCAGTATCCTGCTCTTGTCTAAAACCTCAAAAGAGAGAACGCA 598
Query 595 CCAAAACTGATGACAAGCTCTGAATATTTTCTCGTCTTGTGTCATTATGTTTAGATGTCA 654
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 CCAAAACTGATGACATGCTCTGAATATTTTCTCGTCTTGTGTCATTGTGTTTAGATGTCA 658
Query 655 TTGGGTGATTGAAAACTCCTCATTTTGGCACCTTAAGACACTGGAATCTATTTATTTTCG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 659 TTGGGTGATTGAAAACTCCTCATTTTGGCACCTTAAGACACTGGAATCTATTTATTTGCG 718
Query 715 aaaaaaaaC--T-CTTCTTT-CTCTATTTAACTGTTAATATTCTTGGTACTGATTCAGTT 770
|| ||| | | ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAGAAACTCAGTTCTTTTTTTCTCTATTTAACTGTTAATATTCTTGGTACTGATTCAGTT 778
Query 771 GGTGTTGCTTCTATATAATACATAATTATGTTCTCTGGTCGTTCATGAGTGTTGTCCAAA 830
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 GGTGTTGCTTCTATATAATACATAACTATGTTCTCTGGTCGTTCATGAGTGTTGTCCAAA 838
Query 831 TTCTACTAAGTGAA--ATATGAAGTCTTCATTCCATAGAGTAACGAATCTTAGTTGTG 886
|||||| |||| || ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 839 TTCTACCAAGTTAAGTATATGAAGTCTTCATTCCAAATAGTAACGAATCTTAGTTGTG 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33662535711
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5