BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57880.1
Length=2960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486240 jgi|Araly1|486240|fgenesh2_kg.5__2232__AT3G57880.1 4071 0.0
Ahg474270 jgi|Araly1|474270|fgenesh2_kg.1__4224__AT1G51570.1 2484 0.0
Ahg921284 jgi|Araly1|921284|scaffold_102565.1 215 2e-54
> Ahg486240 jgi|Araly1|486240|fgenesh2_kg.5__2232__AT3G57880.1
Length=2821
Score = 4071 bits (2204), Expect = 0.0
Identities = 2532/2685 (94%), Gaps = 44/2685 (2%)
Strand=Plus/Plus
Query 157 tacttgtcttcttctc-tctttaattttttat-aaatttaattttGGGTTGaaaaaaaCg 214
|||||||||||||||| | ||||| || |||||||| ||||||||| ||||||||
Sbjct 80 TACTTGTCTTCTTCTCTTTTTTAA---AAAATGAAATTTAA-TTTGGGTTG-AAAAAACG 134
Query 215 aggaagaagagaggagaggagac-tctttcttttagtatttatttatggaggaggagagg 273
||||||||||||||||| | | | | |||||| |||||| |||| ||||||||
Sbjct 135 AGGAAGAAGAGAGGAGA-GTG-CTTGACTCTTTTCTTATTTAATTAT---GGAGGAGA-- 187
Query 274 agaCTGTCTTAATCGTTTCCGGGTCTCTTATTCTGATCCATTCTTC-TCTCAAGATCTAA 332
|||||||| ||| | | |||||||||||||||||||| |||| ||| | | | |
Sbjct 188 AGACTGTC-TAA-----T-C-GGTCTCTTATTCTGATCCATGCTTCTTCTGTATA-AT-A 237
Query 333 G-ATTTAC-TGATTTTGAAGTGGAGAAGAAATTAG-T-TG-TCTCGACAAACCCCACTAG 387
| ||| | ||| |||||||||||||||||| ||| | || |||| | || || | ||||
Sbjct 238 GTTTTTTCTTGA-TTTGAAGTGGAGAAGAAAGTAGCTGTGTTCTC-A-AATCCAC-CTAG 293
Query 388 AAACTTTGTTTAGTGTGTCTTCTTAAAGCCTGCAAGATGCAGAGACCACCTCCTGAAGAT 447
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GAACTTTGTTTA--GTGTCTTCTTAAAGCCTGCAAGATGCAGAGACCACCTCCTGAAGAT 351
Query 448 TTCTCCTTGAAGGAGACGAGACCTCATCTAGGTGGAGGAAAACTCTCTGGAGATAAGCTT 507
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 352 TTCTCCTTGAAGGAGACGAGACCTCATCTCGGTGGAGGAAAAATCTCTGGAGATAAGCTG 411
Query 508 ACCAGTACTTATGACCTTGTTGAGCAAATGCAGTATCTCTATGTTCGTGTGGTTAAGGCA 567
||||| ||||||||||| || ||||| ||||||||||| ||||| || ||||||||||||
Sbjct 412 ACCAGCACTTATGACCTCGTGGAGCAGATGCAGTATCTTTATGTCCGAGTGGTTAAGGCA 471
Query 568 AAGGAGTTACCTGGCAAGGATATGACTGGTAGTTGTGACCCTTATGTTGAGGTTAAGCTT 627
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 AAGGAGTTACCTGGGAAGGATATGACTGGTAGTTGTGACCCTTATGTTGAGGTTAAGCTT 531
Query 628 GGAAACTACAAAGGCACCACTAGGCATTTCGAGAAGAAATCTAATCCTGAGTGGAACCAA 687
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 532 GGAAACTACAAAGGAACCACTAGACATTTCGAGAAGAAATCTAATCCTGAGTGGAACCAA 591
Query 688 GTTTTCGCCTTTTCTAAAGATAGGATTCAAGCTTCTTTCCTTGAAGCTACTGTCAAGGAC 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GTTTTCGCCTTTTCTAAAGATAGGATTCAAGCTTCTTTCCTTGAAGCTACTGTCAAGGAC 651
Query 748 AAGGATTTTGTCAAAGATGATTTGATTGGTCGGGTTGTCTTTGATTTGAATGAGGTACCT 807
|||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 652 AAGGATGTTGTGAAAGATGATTTGATTGGTCGGGTTGTGTTTGATTTGAATGAGGTACCT 711
Query 808 AAGAGAGTTCCTCCTGATAGTCCCTTGGCTCCGCAATGGTATAGGCTCGAGGATAGGAAA 867
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 712 AAGAGAGTTCCTCCTGATAGTCCCTTGGCCCCGCAATGGTATAGGCTCGAGGATAGGAAA 771
Query 868 GGTGATAAAGTCAAGGGAGAGCTTATGTTGGCTGTTTGGTTTGGTACTCAAGCTGATGAA 927
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 772 GGTGATAAAGTCAAGGGAGAGCTTATGCTGGCTGTTTGGTTTGGTACTCAAGCTGATGAA 831
Query 928 GCTTTCCCTGAAGCTTGGCACTCTGATGCTGCAACTGTTAGTGGTACTGATGCTCTTGCC 987
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GCCTTCCCTGAAGCTTGGCACTCTGATGCTGCAACTGTTAGTGGTACTGATGCTCTTGCC 891
Query 988 AACATCCGTTCCAAGGTTTATCTTTCTCCTAAGCTTTGGTACCTCAGGGTTAATGTAATT 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 AACATCCGTTCCAAGGTTTATCTTTCTCCTAAGCTTTGGTACCTCAGGGTTAATGTAATT 951
Query 1048 GAAGCTCAAGATTTGATACCAACTGATAAGCAAAGATATCCCGAGGTTTATGTGAAGGCT 1107
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 952 GAAGCTCAAGATTTGATACCAAGTGATAAGCAAAGATATCCTGAGGTTTATGTGAAGGCT 1011
Query 1108 ATAGTGGGAAACCAGGCGTTGAGGACTAGAGTATCGCAGAGCAGGACTATTAATCCCATG 1167
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 1012 ATAGTGGGAAACCAGGCGTTGAGGACTAGAGTATCACAGAGCAGGACTCTTAATCCGATG 1071
Query 1168 TGGAATGAGGATTTGATGTTTGTCGCAGCAGAGCCATTTGAGGAACCTTTGATCCTCAGC 1227
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1072 TGGAATGAGGATTTGATGTTTGTAGCGGCAGAACCATTTGAGGAACCTTTGATCCTCAGC 1131
Query 1228 GTGGAAGATAGAGTTGCTCCAAACAAAGATGAAGTCTTGGGGAGATGTGCGATCCCGTTG 1287
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GTGGAAGACAGAGTTGCTCCTAACAAAGATGAAGTCTTGGGGAGATGTGCGATCCCGTTG 1191
Query 1288 CAGTATTTGGACAGAAGATTTGACCATAAACCGGTGAACAGCAGGTGGTACAATCTCGAG 1347
|||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct 1192 CAGTATTTGGACAGAAGATTTGACCACAAACCAGTGAACAGCAGGTGGTATAACCTCGAG 1251
Query 1348 AAGCATATTATGGTCGATGGAGAGAAGAAGGAGACCAAATTCGCTAGCAGGATTCACATG 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 AAGCATATTATGGTCGATGGAGAGAAGAAGGAGACCAAATTCGCTAGCAGGATTCACATG 1311
Query 1408 AGAATATGTTTGGAAGGAGGGTATCACGTTCTCGATGAGTCTACGCATTACAGCAGTGAT 1467
||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1312 AGAATCTGTTTAGAAGGAGGGTATCACGTTCTTGATGAGTCTACGCATTACAGTAGTGAT 1371
Query 1468 CTTAGACCAACAGCGAAGCAACTATGGAAGCCTAATATCGGTGTACTGGAGTTGGGGATA 1527
||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1372 CTTAGACCAACGGCGAAACAACTATGGAAGCCTAATATCGGTGTGCTGGAGTTGGGGATA 1431
Query 1528 CTGAATGCTACAGGTCTGATGCCTATGAAAACCAAAGACGGCCGGGGAACCACAGATGCA 1587
|| ||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 1432 CTAAATGCGACAGGTCTAATGCCTATGAAAACTAAAGACGGTAGGGGAACCACAGATGCA 1491
Query 1588 TATTGTGTGGCGAAGTACGGACAGAAATGGATTCGAACTCGGACAATCATTGACAGCTTT 1647
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 TATTGTGTGGCAAAGTATGGACAGAAATGGATTCGAACTCGGACAATCATTGACAGCTTT 1551
Query 1648 ACACCAAGATGGAATGAGCAATATACTTGGGAGGTTTTTGATCCGTGCACCGTTGTTACT 1707
|| ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1552 ACCCCAAGATGGAACGAGCAATATACTTGGGAGGTTTTTGATCCGTGTACTGTTGTTACT 1611
Query 1708 GTTGGAGTTTTTGATAACTGCCATCTCCATGGAGGTGAGAAGATTGGAGGAGCAAAAGAT 1767
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1612 GTTGGAGTTTTTGATAACTGCCATCTCCATGGAGGTGAGAAGAATGGAGGAGCAAAAGAT 1671
Query 1768 TCAAGAATCGGGAAGGTAAGAATCAGGCTTTCTACTCTCGAGACTGATCGAGTTTATACA 1827
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1672 TCAAGAATTGGGAAGGTAAGAATCAGGCTTTCTACTCTCGAGACTGATCGAGTTTACACA 1731
Query 1828 CATTCATACCCTCTTTTGGTGCTCCATCCTAACGGAGTCAAGAAAATGGGAGAAATTCAC 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 CATTCATACCCTCTTTTGGTGCTCCATCCTAACGGAGTCAAGAAAATGGGAGAAATTCAC 1791
Query 1888 TTAGCTGTGAGATTCACTTGCTCTTCATTGCTCAACATGATGTATATGTACTCACAGCCT 1947
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1792 TTGGCTGTGAGGTTCACTTGCTCTTCATTGCTCAACATGATGTATATGTACTCACTGCCT 1851
Query 1948 CTCTTACCGAAGATGCATTATATCCATCCACTGACGGTTAGCCAGCTTGATAACTTGAGG 2007
|||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||
Sbjct 1852 CTCTTACCGAAGATGCATTACATCCATCCTCTAACTGTTAGCCAGCTTGATAACTTGAGG 1911
Query 2008 CATCAAGCGACTCAGATTGTATCGATGAGGCTGACCCGAGCAGAACCACCTCTAAGGAAA 2067
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1912 CATCAAGCGACTCAGATTGTATCGATGAGGTTGACCCGAGCAGAACCGCCTCTAAGGAAA 1971
Query 2068 GAAGTAGTTGAGTATATGCTTGATGTGGGTTCTCACATGTGGAGTATGCGGAGAAGCAAA 2127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 GAAGTAGTTGAGTATATGCTTGATGTGGGTTCTCACATGTGGAGTATGCGGAGAAGCAAA 2031
Query 2128 GCAAACTTTTTCAGGATTATGGGAGTTTTGAGTGGGTTAATCGCAGTAGGAAAATGGTTT 2187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2032 GCAAACTTTTTCAGGATTATGGGAGTTTTGAGTGGGTTAATCGCAGTAGGAAAATGGTTT 2091
Query 2188 GAACAAATCTGCAACTGGAAGAATCCAATCACAACAGTCTTGATCCATCTCTTGTTCATC 2247
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2092 GAACAGATCTGCAACTGGAAGAATCCGATCACAACAGTCTTGATCCATCTCTTGTTCATC 2151
Query 2248 ATCCTTGTGCTCTATCCCGAACTAATCTTGCCCACCATCTTCCTCTACCTCTTCCTCATC 2307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 ATCCTTGTGCTCTATCCCGAACTAATCTTGCCCACCATCTTCCTCTACCTCTTCCTCATC 2211
Query 2308 GGTATCTGGTACTACCGTTGGAGACCGAGGCATCCTCCTCACATGGACACACGTCTCTCT 2367
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2212 GGTGTCTGGTATTACCGTTGGAGACCGAGGCATCCTCCTCACATGGACACACGTCTCTCT 2271
Query 2368 CACGCTGACTCAGCCCACCCCGACGAGCTAGATGAAGAGTTCGACACTTTTCCTACTTCC 2427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2272 CACGCTGACTCAGCCCACCCCGACGAGCTAGATGAAGAGTTCGACACTTTTCCTACTTCC 2331
Query 2428 CGACCATCTGACATAGTCAGGATGAGGTATGACAGGTTGAGGAGTATTGCTGGTAGGATT 2487
|||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2332 CGACCATCAGACATTGTTAGGATGAGGTATGACAGGTTGAGGAGTATTGCTGGGAGGATT 2391
Query 2488 CAGACAGTGGTAGGTGATCTAGCAACTCAAGGAGAAAGGCTTCAGTCTCTGCTAAGCTGG 2547
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2392 CAGACAGTGGTAGGTGATCTTGCAACACAAGGAGAAAGGCTTCAGTCTCTGCTAAGCTGG 2451
Query 2548 CGTGATCCGCGTGCAACAGCGCTCTTCGTCTTGTTCTGCTTGATTGCCGCAGTCATTCTC 2607
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 2452 CGTGATCCGCGTGCGACAGCACTCTTCGTCTTGTTCTGCTTGATTGCCGCAGTTATTCTC 2511
Query 2608 TATGTGACACCTTTCCAGGTTGTGGCTCTTTGTATTGGAATCTATGCTCTGAGACATCCG 2667
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2512 TATGTGACACCTTTCCAGGTTGTGGCTCTTTGTATTGGAATCTATGTTCTGAGACATCCG 2571
Query 2668 AGGTTCAGATACAAACTACCATCCGTTCCTCTCAATTTCTTCAGAAGGCTTCCTGCAAGA 2727
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2572 AGGTTCAGATACAAACTACCATCTGTTCCTCTCAATTTCTTCAGGAGGCTTCCTGCAAGA 2631
Query 2728 ACTGATTGCATGCTCTGACCTGCAAAAACTGCTTCCAATACCGAAGAAAACTTC-TATAA 2786
|||||||||||||||||||||| |||||||||||||||| || ||||||| | | | |
Sbjct 2632 ACTGATTGCATGCTCTGACCTGGAAAAACTGCTTCCAATCCCAAAGAAAA-TGCCTCCA- 2689
Query 2787 GACTTGT-AGTTTGTTCTTGTTAAAAATATCATGATGACTCTTTT 2830
||||||| |||||||| ||||||||| ||||||||||||||||
Sbjct 2690 GACTTGTTAGTTTGTT---GTTAAAAATGTCATGATGACTCTTTT 2731
Score = 185 bits (100), Expect = 1e-45
Identities = 112/118 (95%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 2842 TTGTTAAAAATGTCATGATGACTCTTTTCTTGGTGATGGTGATGATGTATCCGTCTGTCT 2901
|||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| |||||
Sbjct 2704 TTGTTAAAAATGTCATGATGACTCTTTTCTTGTTGATGGTTATGATGTCTCCGTTTGTCT 2763
Query 2902 TTTAACATTATTAAGACTTTTGTTTGAAAGTAGTAAAGAAGTATCTTGTGTGGTTTTG 2959
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2764 TTTAGCATTATTAAGACTTTTGTTTAAAAGTAGTAAAGAAGTATCTTGTGTGGTTTTG 2821
> Ahg474270 jgi|Araly1|474270|fgenesh2_kg.1__4224__AT1G51570.1
Length=2457
Score = 2484 bits (1345), Expect = 0.0
Identities = 2025/2352 (86%), Gaps = 51/2352 (2%)
Strand=Plus/Plus
Query 424 ATGCAGAGACCACCTCCTGAAGATTTCTCCTTGAAGGAGACGAGACCTCATCTAGGTGGA 483
|||||||||||||||||||||||||||||||| |||||||| | ||||||||| ||||||
Sbjct 1 ATGCAGAGACCACCTCCTGAAGATTTCTCCTTAAAGGAGACTAAACCTCATCTCGGTGGA 60
Query 484 GGAAAACTCTCTGGAGATAAGCTTACCAGTACTTATGACCTTGTTGAGCAAATGCAGTAT 543
|| ||| || | ||||||||||| || | || |||||||| || |||||||||||||||
Sbjct 61 GGCAAAGTCACCGGAGATAAGCTCACGACCACATATGACCTCGTCGAGCAAATGCAGTAT 120
Query 544 CTCTATGTTCGTGTGGTTAAGGC-AAAGGAGTTACCTGGCAAGGA-TATGACTGGTAGTT 601
|||||||||||||| || ||||| ||| || ||||| || || || | | |||||||| |
Sbjct 121 CTCTATGTTCGTGTCGTAAAGGCTAAA-GATTTACCAGGTAAAGACT-TAACTGGTAGCT 178
Query 602 GTGACCCTTATGTTGAGGTTAAGCTTGGAAACTACAAAGGCACCACTAGGCATTTCGAGA 661
|||||||||| || || ||||||||||| ||||||| ||| |||||||| ||||| ||||
Sbjct 179 GTGACCCTTACGTCGAAGTTAAGCTTGGTAACTACAGAGGAACCACTAGACATTTTGAGA 238
Query 662 AGAAATCTAATCCTGAGTGGAACCAAGTTTTCGCCTTTTCTAAAGATAGGATTCAAGCTT 721
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 239 AGAAATCTAATCCTGAGTGGAACCAAGTTTTCGCCTTTTCTAAAGATAGGGTACAAGCTT 298
Query 722 CTT-TCCTTGAAGCTACTGTCAAGGACAAGGATTTTGTCAAAGATGATTTGATTGGTCGG 780
||| | |||||||||||||||||||| || ||||| || ||||||||||||||||||||
Sbjct 299 CTTAT-CTTGAAGCTACTGTCAAGGATAAAGATTTAGTTAAAGATGATTTGATTGGTCGT 357
Query 781 GTTGTCTTTGATTTGAATGAGGTACCTAAGAGAGTTCCTCCTGATAGTCCCTTGGCTCCG 840
||||| ||||||||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 358 GTTGTGTTTGATTTGAATGAGATACCTAAGAGAGTTCCTCCTGATAGTCCTTTAGCTCCA 417
Query 841 CAATGGTATAGGCTCGAGGATAGGAAAGGTGATAAAGTCAAGGGAGAGCTTATGTTGGCT 900
||||||||||| | || ||| ||||||| | ||||| || |||||||||||||| |||
Sbjct 418 CAATGGTATAGATTAGAAGATGGGAAAGGCCAGAAAGTTAAAGGAGAGCTTATGTTAGCT 477
Query 901 GTTTGGTTTGGTACTCAAGCTGATGAAGCTTTCCCTGAAGCTTGGCACTCTGATGCTGCA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GTTTGGTTTGGTACTCAAGCTGATGAAGCTTTCCCTGAAGCTTGGCACTCTGATGCTGCA 537
Query 961 ACTGTTAGTGGTACTGATGCTCTT-GCCAACATCCGTTCCAAGGTTTATCTTTCTCCTAA 1019
||||||||||| ||||||||| || || |||||| | || ||||||||||| ||||||||
Sbjct 538 ACTGTTAGTGGAACTGATGCT-TTAGCTAACATCAGGTCTAAGGTTTATCTGTCTCCTAA 596
Query 1020 GCTTTGGTACCTCAGGGTTAATGTAATTGAAGCTCAAGATTTGATACCAA-CTGATAA-G 1077
||||||||| || ||||||||||| ||||||||||| ||||||||||| | | ||||| |
Sbjct 597 GCTTTGGTATCTTAGGGTTAATGTGATTGAAGCTCAGGATTTGATACCGAGC-GATAAAG 655
Query 1078 CAAAGATATCCCGAGGTTTATGTGAAGGCT-ATAGTGGGAAACCAGGCGTTGAGGACTAG 1136
| ||||||| || |||| |||||| | | ||| ||||||| ||||| |||||||||||
Sbjct 656 GGA-GATATCCTGAAGTTTTTGTGAAAG-TGATAATGGGAAATCAGGCATTGAGGACTAG 713
Query 1137 AGTATCGCAGAGCAGGACTATTAATCCCATGTGGAATGAGGATTTGATGTTTGTCGCAGC 1196
||| || || ||||||| ||||||||| |||||||||||||||||||||||||| | |||
Sbjct 714 AGTGTCACAAAGCAGGAGTATTAATCCGATGTGGAATGAGGATTTGATGTTTGTTGTAGC 773
Query 1197 AGAGCCATTTGAGGAACCTTTGATCCTCAGCGTGGAAGATAGAGTTGCTCCAAACAAAGA 1256
||||| ||||| || |||||||| || || ||||||||||||||||| || || |||||
Sbjct 774 TGAGCCGTTTGAAGAGCCTTTGATTCTAAGTGTGGAAGATAGAGTTGCACCGAATAAAGA 833
Query 1257 TGAAGTCTTGGGGAGATGTGCGATCCCGTTGCAGTATTTGGACAGAAGATTTGACCATAA 1316
|||||||||||||||||| ||| | ||||||||||||||||||| ||| |||||| |||
Sbjct 834 TGAAGTCTTGGGGAGATGCGCGGTTCCGTTGCAGTATTTGGACAAAAGGTTTGACTATAG 893
Query 1317 ACCGGTGAACAGCAGGTGGTACAATCTCGAGAAGCATATTATGGTCGATGGAG-AGA-A- 1373
|||||||||||||||||||| || |||||||||||| |||| | || |||| ||| |
Sbjct 894 ACCGGTGAACAGCAGGTGGTTTAACCTCGAGAAGCATGTTATAATGGAAGGAGGAGAGAA 953
Query 1374 GAAGGAGACCAAATTCGCTAGCAGGATTCACATGAGAATATGTTTGGAAGGAGGGTATCA 1433
||| |||| |||||| || |||| |||||||||||| || |||||||||||||| |||||
Sbjct 954 GAAAGAGATCAAATTTGCCAGCAAGATTCACATGAGGATCTGTTTGGAAGGAGGTTATCA 1013
Query 1434 CGTTCTCGATGAGTCTACGCATTACAGCAGTGATCTTAGACCAACAGCGAAGCAACTATG 1493
|| || ||||| ||||| |||||||| ||||| ||||||||||| || |||||||||||
Sbjct 1014 TGTGCTTGATGAATCTACACATTACAGTAGTGACCTTAGACCAACTGCAAAGCAACTATG 1073
Query 1494 GAAGCCTAATATCGGTGTACTGGAGTT-GGGGATACTGAA-TGCTACAGGTCTGATGCCT 1551
||||||||| |||||||| || ||| | |||| | || || ||| || ||| | ||||||
Sbjct 1074 GAAGCCTAACATCGGTGTTCTTGAGCTAGGGG-T-CTTAAATGCGACTGGTTTAATGCCT 1131
Query 1552 ATGAAAACCAAAGACGGCCG--GGG-AACCACAGATGCATATTGTGTGGCGAAGTACGGA 1608
|||||| | ||||| || | ||| |||||| ||||| ||||||||||| ||||| ||
Sbjct 1132 ATGAAAGCTAAAGAAGGTGGTAGGGGAACCACGGATGCGTATTGTGTGGCAAAGTATGGG 1191
Query 1609 CAGAAATGGATTC-GAACTCGGACAATCATTGACAGCTTTACACCAAGATGGAATGAGCA 1667
||||||||||| | |||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1192 CAGAAATGGAT-CAGAACTCGGACAATCATTGACAGCTTTACCCCAAGATGGAACGAGCA 1250
Query 1668 ATATACTTGGGAGGTTTTTGATCCGTGCACCGTTGTTACTGTTGGAGTTTTTGATAACTG 1727
|||||||||||| ||||| |||||||| || |||||||||||||| || || ||||||||
Sbjct 1251 ATATACTTGGGAAGTTTTCGATCCGTGTACTGTTGTTACTGTTGGTGTGTTCGATAACTG 1310
Query 1728 CCATCTCCATGGAGGTGAGAAGATT---GGAGGAGCAAAAGATTCAAGAATCGGGAAGGT 1784
|||||| || || ||||| || | ||||||| |||||||||||| || ||||||||
Sbjct 1311 CCATCTACACGGTGGTGACAAAAACAACGGAGGAGGAAAAGATTCAAGGATTGGGAAGGT 1370
Query 1785 AAGAATCAGGCTTTCTACTCTCGAGACTGATCGAGTTTATACACATTCATACCCTCTTTT 1844
|| || ||||| |||||||||||| |||||||||| || ||||||||||| ||||| ||
Sbjct 1371 GAGGATAAGGCTCTCTACTCTCGAGGCTGATCGAGTCTACACACATTCATATCCTCTATT 1430
Query 1845 GGTGCTCCATCCTAACGGAGTCAAGAAAATGGGAGAAATTCACTTAGCTGTGAGATTCAC 1904
|||||| |||||||| |||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1431 GGTGCTACATCCTAATGGAGTCAAGAAAATGGGAGAGATTCACTTAGCTGTGAGGTTTAC 1490
Query 1905 TTGCTCTTCATTGCTCAACATGATGTATATGTACTCACAGCCTCTCTTACCGAAGATGCA 1964
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1491 TTGCTCTTCATTGCTCAACATGATGTATATGTATTCTTTGCCTCTCTTACCGAAGATGCA 1550
Query 1965 TTATATCCATCCACTGACGGTTAGCCAGCTTGATAACTTGAGGCATCAAGCGACTCAGAT 2024
|| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 CTACCTCCATCCTCTCACGGTTAGCCAGCTTGATAACTTGAGGCATCAAGCGACTCAGAT 1610
Query 2025 TGTATCGATGAGGCTGACCCGAGCAGAACCACCTCTAAGGAAAGAAGTAGTTGAGTATAT 2084
||| |||| ||||| || || ||||| |||||| | ||||||||||| |||||||||||
Sbjct 1611 TGTGTCGACAAGGCTAACACGTGCAGAGCCACCTTTGAGGAAAGAAGTTGTTGAGTATAT 1670
Query 2085 GCTTGATGTGGGTTCTCACATGTGGAGTATGCGGAGAAGCAAAGCAAACTTT-TTCAGGA 2143
|||||||||||| |||||||||||||||||||| |||||||| || || ||| |||||||
Sbjct 1671 GCTTGATGTGGGATCTCACATGTGGAGTATGCGTAGAAGCAAGGCGAA-TTTCTTCAGGA 1729
Query 2144 TTATGGGAGTTTTGAGTGGGTTAATCGCAGTAGGAAAATGGTTTGAACAAATCTGCA-AC 2202
| |||||||||||||||||| ||||||| ||||| |||||||||||||| ||||| |
Sbjct 1730 TAATGGGAGTTTTGAGTGGGATAATCGCGGTAGGGAAATGGTTTGAACAGATCTGTGTA- 1788
Query 2203 TGGAAGAATCCAATCACAACAGTCTTGATCCATC-T-CTTGTTCATCATCCTTGTGCTCT 2260
||||| ||||| || ||||| || || ||||| | | || |||||| |||||||| |||
Sbjct 1789 TGGAAAAATCCGATAACAACGGTTTTAATCCA-CATTCT-GTTCATTATCCTTGTTATCT 1846
Query 2261 ATCCCGAACTAATCTTGCCCACCATCTTCCTCTACCTCTTCCTCATCGGTA-TCTGGTAC 2319
||||||| || |||||||||||||| ||||||||||||||| | || || | | ||||||
Sbjct 1847 ATCCCGAGCTTATCTTGCCCACCATTTTCCTCTACCTCTTCTTGATTGG-AGTTTGGTAC 1905
Query 2320 TACCGTTGGAGACCGAGGCATCCTCCTCACATGGACACACGTCTCTCTCACGCTGACTCA 2379
|| |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1906 TATCGTTGGAGGCCGAGACATCCTCCTCACATGGACACACGTCTCTCACACGCAGACTCA 1965
Query 2380 GCCCACCCCGACGAGCTAGATGAAGAGTTCGACACTTTTCCTACTTCCCGACCATCTGAC 2439
|| ||||| || ||||| || || ||||| |||||||||||||||||||||||||| |||
Sbjct 1966 GCACACCCTGATGAGCTCGACGAGGAGTTTGACACTTTTCCTACTTCCCGACCATCAGAC 2025
Query 2440 ATAGTCAGGATGAGGTATGACAGGTTGAGGAGTATTGCTGGTAGGATTCAGACAGTGGTA 2499
|| ||||||||||| |||||||| | || || ||||||||||||||||| ||||| ||
Sbjct 2026 ATCGTCAGGATGAGATATGACAGACTCAGAAGCATTGCTGGTAGGATTCAAACAGTTGTT 2085
Query 2500 GGTGATCTAGCAACTCAAGGAGAAAGGCTTC-AGTC-TCTGCTAAGCTGGCGTGATCCGC 2557
|||||||| |||||||||||||| || ||| |||| | |||||||||||||||| || |
Sbjct 2086 GGTGATCTTGCAACTCAAGGAGAGAGA-TTCCAGTCGT-TGCTAAGCTGGCGTGACCCTC 2143
Query 2558 GTGCAACAGCGCTCTTCGTCTTGTTCTG-CTTGATTGCCGCAGTCATTCTCTATGTGACA 2616
|||| || || ||||||||||||||||| || ||| || || || |||| ||||| ||
Sbjct 2144 GTGCTACTGCTCTCTTCGTCTTGTTCTGTCT-GATAGCTGCGGTGGTTCTGTATGTAACT 2202
Query 2617 CC-TTTCCAGGTTGTGGCTCTTTGT-ATTGGAATCTATGCT-CTGAGACATCCGAGGTTC 2673
|| |||| ||||||||||| ||| | ||||| | |||| | || ||||| |||||| ||
Sbjct 2203 CCCTTTC-AGGTTGTGGCT-TTTCTTATTGGCTTGTATG-TGCTTAGACACCCGAGGCTC 2259
Query 2674 AGATACAAACTACCATCCGTTCCTCTCAATTTCTTCAGAAGGCTTCCTGCAAGAACTGAT 2733
|| ||||| || ||||| |||||||| || |||||||| || ||||| ||||||||||||
Sbjct 2260 AGGTACAAGCTCCCATCAGTTCCTCTTAACTTCTTCAGGAGACTTCCAGCAAGAACTGAT 2319
Query 2734 TGCATGCTCTGA 2745
||||||||||||
Sbjct 2320 TGCATGCTCTGA 2331
> Ahg921284 jgi|Araly1|921284|scaffold_102565.1
Length=3118
Score = 215 bits (116), Expect = 2e-54
Identities = 895/1257 (71%), Gaps = 110/1257 (9%)
Strand=Plus/Plus
Query 1420 GAAGGAGGGTATCACGTTCTCGATGAGTCTACGCATTACAGCAGTGATCTT-AGACCAAC 1478
|||| ||| || || || || || ||||| || |||| |||||| |||||| | ||| |
Sbjct 1785 GAAGCAGGTTACCATGTCCTTGACGAGTCCACACATTTCAGCAGCGATCTTCA-ACCGTC 1843
Query 1479 AGCGAAGCAACT-ATGGAAGCCTAATATCGGTG-TACTGGAG-TTGGGGATACTGAATGC 1535
| ||||| | | ||||||| | ||| || | | || ||| || ||||| || | |||
Sbjct 1844 TTCAAAGCATTTGA-GGAAGCCGAGTATTGG-GATTCTTGAGCTT-GGGATTCTCAGTGC 1900
Query 1536 TACAGG-TC-TGATGCCTATGAAAACCAAAGACGGCCGGGGAACCACAGATGCATATTGT 1593
| ||| | |||||||||||||| ||||| | || ||| || ||| | ||||||
Sbjct 1901 T--AGGAACTTGATGCCTATGAAAGGTAAAGA-TG--GGAGAATGACTGATCCCTATTGT 1955
Query 1594 GTGGCGAAGTACGG-ACAGAAATGGATTCGAACTCGGACAATC-ATT-GACAGC-TTTAC 1649
|||||||| || || | | |||||| | |||| |||| || || ||| || || |
Sbjct 1956 GTGGCGAAATATGGTA-ACAAATGGGTGAGAACAAGGAC--TCTTTTAGAC-GCGCTTGC 2011
Query 1650 ACC-AAGATGGAATGAGCAATATACTTGGGAGGTTTTTGATCCGTGCACCGTTGTTACTG 1708
|| ||| ||||| ||||| ||||||||||| ||| |||||| ||||| || | ||
Sbjct 2012 GCCTAAG-TGGAACGAGCAGTATACTTGGGAAGTTCATGATCCTTGCACGGTCATAACAA 2070
Query 1709 TTGGAGTTTTTGATAACT-GCCATCTCCATGGA-GGTGAGAAGATTGGAGGAGCAAAAGA 1766
||||||| ||||| || | | ||| | || || |||| | || | ||| | | ||
Sbjct 2071 TTGGAGTCTTTGACAA-TAGTCATGT-CAACGATGGTG-G-TGACTCTAGG-G-ACCAG- 2123
Query 1767 TTCAAGAATCGGGAAGGTAAGAATCAGGCTTTCTACTCTCGAGACTGATCGAGTTTATAC 1826
|| || ||||| || ||| ||||||| ||||| || ||||| || || ||||| ||
Sbjct 2124 ----AGGATTGGGAAAGTTAGAGTCAGGCTATCTACGCTGGAGACAGACCGGGTTTACAC 2179
Query 1827 ACATTCA-TACCCTCTTTTGGTGC-TCCATCCTAACGGAGTCAAGAA-AATGGGAGAAAT 1883
|||| | ||||| || |||| | | || || || | ||||| ||| || || |
Sbjct 2180 TCATT-ACTACCCGCTGCTGGTTCTTACA-CCGGGTGGTCTAAAGAAGAAT-GGTGAGCT 2236
Query 1884 TCA-CTTAGCTGTGAGATTCACTTGC-TCTTCATTGCTCAACATGAT-GTATATGTACT- 1939
||| | ||||| |||| | ||| ||| | | ||| | |||||||| | | | ||| |
Sbjct 2237 TCAGC-TAGCTCTGAGGTACACCTGCACCGGCTTTG-TTAACATGATGGCACA-GTA-TG 2292
Query 1940 CACAG-CC-TCTCTTACCGAAGATGCATTATATCCATCCACTGA-CGGTTAGCCAGCTTG 1996
| || || | | ||||| || ||||||||||| || ||| | | | || || || | |
Sbjct 2293 GA-AGACCGT-TGTTACCCAAAATGCATTATATTCAACCAAT-ACCAGTCAGGCATATCG 2349
Query 1997 A-TAACTTGAGGCATCAAGCGACT-CAGATTGTAT-CGATGAGGCTGACCCGA-G-CAGA 2051
| | ||| |||||||| |||| | || || || | | | || || | | | | | ||
Sbjct 2350 ACTTGCTT-AGGCATCAGGCGA-TGCAAATAGT-TGCAACAAGACT-A-TCAAGGTCCGA 2404
Query 2052 ACCACCTCTAAGGA-AAGAAGTAGTTGAGTATATGCTTGATGT-GGGTTCTCACATGTGG 2109
||||||||| | || ||| || || ||||| ||||||||||| | | | || ||||
Sbjct 2405 ACCACCTCTGA-GACGAGAGGTTGTGGAGTACATGCTTGATGTAGACTAC-CATATGTTC 2462
Query 2110 AGTATGC-GGAGAAGCAAAGCAAACTTT-TTCAGGATTATGGGAG-TT-T-TGAGTGGGT 2164
||| | | ||||||||||||| || ||| ||| || || | | || | | | |||
Sbjct 2463 AGTCT-CAGGAGAAGCAAAGCTAA-TTTCAGCAGAATCAT-GTCGCTTCTCT-CCTCGGT 2518
Query 2165 TAATCGCAGTAGGAAAATGGTTTGAAC-AAATCTGCAAC-TGGAAG-AATCCAATCACAA 2221
| || || | || ||| || ||| | |||||| || ||| || || || |||||||
Sbjct 2519 CACTC-TGGTCTGCAAGTGG-TTCAACGATATCTGC-ACATGG-AGAAACCCGATCACAA 2574
Query 2222 C-AGTCTTGATC-CATCTCTTGTTCATCATCCTTGTGCT-CTATCCC-GAACTAATCTTG 2277
| |||| | || | | || ||||| | || ||||| || ||| ||| ||||| || ||
Sbjct 2575 CGTGTCTAGTTCACGT-TC-TGTTCTTGATTCTTGT-CTGCTA-CCCAGAACTGATTTTA 2630
Query 2278 CCCACCA-TCTTCCTCTACCTCTTCCTCATCGGTATCTGGTACTACCGTTGGAGACCGAG 2336
|||| || |||||||||||||||| | || || || ||| | ||||| | ||||| ||
Sbjct 2631 CCCA-CAGTCTTCCTCTACCTCTTTGTGATAGGCATGTGGAATTACCGGTACAGACCAAG 2689
Query 2337 GCATCCTCCTCACATGGACACACGTCTCTCTCACGCTGACT-CAGCCCACCCCGACGAGC 2395
|| || |||||||||||| | ||| | || || || ||| | || ||||| |||||||
Sbjct 2690 ACACCCACCTCACATGGACGCTCGTGTGTCCCAAGCAGACAAC-GCACACCCAGACGAGC 2748
Query 2396 TAGATGAAGAGTTCGACACTTTTCCTACTTCCCGACCATCTGACATAGTCAGGATGAGGT 2455
|||||||||||||||||||||| || || | |||| | || || ||||| |||||||
Sbjct 2749 TAGATGAAGAGTTCGACACTTTCCCCACCAGCAGACCGGCAGATATTGTCAGAATGAGGT 2808
Query 2456 ATGACAGG-TTGAGGAGTATTGCTGGTAG-GATTCAGACAGTGGTAGGTGATCTAGCAAC 2513
|||| ||| || ||||| ||| |||||| | |||||||||| ||||| ||||| || ||
Sbjct 2809 ATGATAGGCTT-AGGAGCGTTGGTGGTAGAG-TTCAGACAGTTGTAGGCGATCTGGCGAC 2866
Query 2514 TCAAGGAGAAAGGCTTCA-GTCTCTGCTAAGCTGGCGTGATCCGCGTGCAACAGCGCTCT 2572
|||||| || || |||| | |||| || |||||| | || ||| | ||||| || | |
Sbjct 2867 TCAAGGGGAGAGAATTCAAG-CTCTTCTTAGCTGGAGAGACCCGAGAGCAACTGCTTTAT 2925
Query 2573 TCGTCTTGTTCTGC-TTGAT-TGCCGCAGTCATTCTCTATGTGACACCTTTCCAGGT 2627
|| || | || ||| ||||| || || || || ||||||| ||||| ||||||||
Sbjct 2926 TCATCGTCTT-TGCATTGATCTGG-GCCGTGTTTATCTATGTCACACCATTCCAGGT 2980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111756778830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5