BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G57910.1 Length=1165 Score E Sequences producing significant alignments: (Bits) Value Ahg486242 jgi|Araly1|486242|fgenesh2_kg.5__2234__AT3G57910.1 1666 0.0 > Ahg486242 jgi|Araly1|486242|fgenesh2_kg.5__2234__AT3G57910.1 Length=1114 Score = 1666 bits (902), Expect = 0.0 Identities = 1031/1091 (95%), Gaps = 17/1091 (2%) Strand=Plus/Plus Query 1 CGCGAACGCAAGCTCCGTCGGCAATGGCAGAATCGACGAGAAATCTGACTGGGCTTGGAG 60 ||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 CGCTAACCCAAGCTCCGTCGGCAATGGCAGAATCGACGAGAAATCTGACTGGACTTGGAG 60 Query 61 GAGAAGCAGCGAAAGAAGAAGATGATGAGTACATGGGAGACCTTTCTCAGTTTATTCCTC 120 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 61 GAGAAGCAGCGAAAGAAGAAGATGATGACTACATGGGAGACCTTTCTCAGTTTATTCCTC 120 Query 121 AGGAACTTAGCCAGACCTCCAAAAGAAAGGAATCTGAGAAGAAAACTGTAATCGTAGAAC 180 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 121 CGGAACTTACCCAGACCTCCAAAAGAAAGGAATCTGAAAAGAAAACTGTAATCGTTGAAC 180 Query 181 CATCACGGAAGAAGTTAAAAAATCTCAATTGGCACGAGAGACGAAGATTGGAGAAAGAGA 240 ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 181 CATCACGGAAGAAGTTAAAGAATCTCAATTGGCACGAGAGGCGAAGATTGGAGAAAGAGA 240 Query 241 GGAAACAGATAGAAGAAGATGAGCAGACATTGGCTCGTATAGTAGACACTCCAATAGGAG 300 |||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||| Sbjct 241 GGAAACAGATAGAAGAGGATGAGCAGACATTGGCTCGTATTGTAGACACTCCTATTGGAG 300 Query 301 AGTCTAACATAGGGTTTAAGCTATTGAAGCAAATGGGTTACAAGCCAGGTTCTGCTCTTG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGTCTAACATAGGGTTTAAGCTATTGAAGCAAATGGGTTACAAGCCAGGTTCTGCTCTTG 360 Query 361 GTAAACAAGGCTCTGGTAGAGCTGAGCCAGTGACTATGGATATTCGAAGATCGAGAGCCG 420 ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 361 GTAAAGAAGGCTCTGGTAGGGCTGAGCCAGTGACTATGGATATTCGAAGATCGAGGGCCG 420 Query 421 GTGTGGgaagagaggatccacataaggagaagaagaaaaaggaggagattgaggctgaga 480 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 421 GTGTGGGAAGAGAGGATCCACATAAGGAGAAGAAGAAAAAAGAGGAGATTGAGGCTGAGA 480 Query 481 atgagaagagaaaagtggatgagaTGTTGGAGGATTTTGGGTCTAGACAGAAGTCTCAAT 540 |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 481 TTGAGAAGAGAAAGGTGGAGGAGATGTTGGAGGATTTTGGGTCTAGACAGAAGTCTCAAT 540 Query 541 GGCGTAAGAAAAGAGTTTTGATTAACTTTAGGAAGGCTAAGGCTGCTCTTGATCAACTTG 600 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 541 GGCGTAAGAAGAGAGTTTTGATTAACTTTAGGAAGGCTAAGGCGGCTCTTGATCAACTTG 600 Query 601 AGAATGTAGAAGTTGTTCCggagaagaaaaatgaggaagatgaagatggtaagcctgatg 660 |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 601 AGAACGTAGAAGTTGTTCCGGAGAAGAAAAACGAGGAAGATGAGGATGGTAAGCCTGATG 660 Query 661 aagaagaggaagaagaggaggagatcactgaagaggatTTGCAAGAAATATTAATGAAAC 720 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 AAGAAGAGGAAGAAGAAGAGGAGATCACTGAAGAGGATTTGCAAGAAATATTAATGAAAC 720 Query 721 TGAGAGCTGAACATTGGTATTGCCTTTTCTGCGGGTTCCAGTATGAAACGACTGAAGCTC 780 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 721 TGAGAGATGAACATTGGTATTGCCCTTTCTGCGGGTTCCAGTATGAAACGACTGAAGCCC 780 Query 781 TTCTATCCAACTGTCCTGGCGTAAATGAGGATGATCACTAGATAAGCCACACTAGTATGG 840 |||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 781 TTCTATCCAATTGTCCTGGCGTAAATGAGGATGATCACTAGATAAGTCACAGTAGTATGG 840 Query 841 AAGCACACAAACACAATCCATGTCTGCAGAAGCTTCAGGTTGAAAATTTCCTGATGTGGC 900 ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 841 AAGCACACAAACACAAT----GTCTGCAGAAGCTTCAGGTTGAAAATTACCTGATGTGGC 896 Query 901 TGAAGAGGAAGCAAGATACAGAAGGAAGACTGTGTTTGCAGTTGAGGTACACACTT-AGA 959 |||||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||| Sbjct 897 TGAAGAGGAAGCAAGATACAGAAGAAAGACTGTGTTTGCGGGTGAGGTACACACTTTAGA 956 Query 960 A--TCTTAAGGACTTGCTAATTCTCAT---------GCTTTTAAATAGATAGTAGGATGA 1008 | | |||||||||||||||||| ||| |||||||| ||||||||||||||| Sbjct 957 AAATTTTAAGGACTTGCTAATTCCCATATTACTCTTGCTTTTAA-TAGATAGTAGGATGA 1015 Query 1009 TAAAAGCATGTGGAACTCTGATTTGATAAGACAATATATTGATGATAATGTTGATGTTTC 1068 | ||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| Sbjct 1016 TTAAAGCATGTGGAACTCTGATTTGATAAAACAATATATTGATTATGATGTTGATGTTTC 1075 Query 1069 AATTTGATCTC 1079 ||||||||||| Sbjct 1076 AATTTGATCTC 1086 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43460125380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5