BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57910.1
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486242 jgi|Araly1|486242|fgenesh2_kg.5__2234__AT3G57910.1 1666 0.0
> Ahg486242 jgi|Araly1|486242|fgenesh2_kg.5__2234__AT3G57910.1
Length=1114
Score = 1666 bits (902), Expect = 0.0
Identities = 1031/1091 (95%), Gaps = 17/1091 (2%)
Strand=Plus/Plus
Query 1 CGCGAACGCAAGCTCCGTCGGCAATGGCAGAATCGACGAGAAATCTGACTGGGCTTGGAG 60
||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 CGCTAACCCAAGCTCCGTCGGCAATGGCAGAATCGACGAGAAATCTGACTGGACTTGGAG 60
Query 61 GAGAAGCAGCGAAAGAAGAAGATGATGAGTACATGGGAGACCTTTCTCAGTTTATTCCTC 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 GAGAAGCAGCGAAAGAAGAAGATGATGACTACATGGGAGACCTTTCTCAGTTTATTCCTC 120
Query 121 AGGAACTTAGCCAGACCTCCAAAAGAAAGGAATCTGAGAAGAAAACTGTAATCGTAGAAC 180
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 121 CGGAACTTACCCAGACCTCCAAAAGAAAGGAATCTGAAAAGAAAACTGTAATCGTTGAAC 180
Query 181 CATCACGGAAGAAGTTAAAAAATCTCAATTGGCACGAGAGACGAAGATTGGAGAAAGAGA 240
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 181 CATCACGGAAGAAGTTAAAGAATCTCAATTGGCACGAGAGGCGAAGATTGGAGAAAGAGA 240
Query 241 GGAAACAGATAGAAGAAGATGAGCAGACATTGGCTCGTATAGTAGACACTCCAATAGGAG 300
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 241 GGAAACAGATAGAAGAGGATGAGCAGACATTGGCTCGTATTGTAGACACTCCTATTGGAG 300
Query 301 AGTCTAACATAGGGTTTAAGCTATTGAAGCAAATGGGTTACAAGCCAGGTTCTGCTCTTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTCTAACATAGGGTTTAAGCTATTGAAGCAAATGGGTTACAAGCCAGGTTCTGCTCTTG 360
Query 361 GTAAACAAGGCTCTGGTAGAGCTGAGCCAGTGACTATGGATATTCGAAGATCGAGAGCCG 420
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 GTAAAGAAGGCTCTGGTAGGGCTGAGCCAGTGACTATGGATATTCGAAGATCGAGGGCCG 420
Query 421 GTGTGGgaagagaggatccacataaggagaagaagaaaaaggaggagattgaggctgaga 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 GTGTGGGAAGAGAGGATCCACATAAGGAGAAGAAGAAAAAAGAGGAGATTGAGGCTGAGA 480
Query 481 atgagaagagaaaagtggatgagaTGTTGGAGGATTTTGGGTCTAGACAGAAGTCTCAAT 540
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGAGAAGAGAAAGGTGGAGGAGATGTTGGAGGATTTTGGGTCTAGACAGAAGTCTCAAT 540
Query 541 GGCGTAAGAAAAGAGTTTTGATTAACTTTAGGAAGGCTAAGGCTGCTCTTGATCAACTTG 600
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 GGCGTAAGAAGAGAGTTTTGATTAACTTTAGGAAGGCTAAGGCGGCTCTTGATCAACTTG 600
Query 601 AGAATGTAGAAGTTGTTCCggagaagaaaaatgaggaagatgaagatggtaagcctgatg 660
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 601 AGAACGTAGAAGTTGTTCCGGAGAAGAAAAACGAGGAAGATGAGGATGGTAAGCCTGATG 660
Query 661 aagaagaggaagaagaggaggagatcactgaagaggatTTGCAAGAAATATTAATGAAAC 720
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGAAGAGGAAGAAGAAGAGGAGATCACTGAAGAGGATTTGCAAGAAATATTAATGAAAC 720
Query 721 TGAGAGCTGAACATTGGTATTGCCTTTTCTGCGGGTTCCAGTATGAAACGACTGAAGCTC 780
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 721 TGAGAGATGAACATTGGTATTGCCCTTTCTGCGGGTTCCAGTATGAAACGACTGAAGCCC 780
Query 781 TTCTATCCAACTGTCCTGGCGTAAATGAGGATGATCACTAGATAAGCCACACTAGTATGG 840
|||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 781 TTCTATCCAATTGTCCTGGCGTAAATGAGGATGATCACTAGATAAGTCACAGTAGTATGG 840
Query 841 AAGCACACAAACACAATCCATGTCTGCAGAAGCTTCAGGTTGAAAATTTCCTGATGTGGC 900
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 841 AAGCACACAAACACAAT----GTCTGCAGAAGCTTCAGGTTGAAAATTACCTGATGTGGC 896
Query 901 TGAAGAGGAAGCAAGATACAGAAGGAAGACTGTGTTTGCAGTTGAGGTACACACTT-AGA 959
|||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||
Sbjct 897 TGAAGAGGAAGCAAGATACAGAAGAAAGACTGTGTTTGCGGGTGAGGTACACACTTTAGA 956
Query 960 A--TCTTAAGGACTTGCTAATTCTCAT---------GCTTTTAAATAGATAGTAGGATGA 1008
| | |||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 957 AAATTTTAAGGACTTGCTAATTCCCATATTACTCTTGCTTTTAA-TAGATAGTAGGATGA 1015
Query 1009 TAAAAGCATGTGGAACTCTGATTTGATAAGACAATATATTGATGATAATGTTGATGTTTC 1068
| ||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 1016 TTAAAGCATGTGGAACTCTGATTTGATAAAACAATATATTGATTATGATGTTGATGTTTC 1075
Query 1069 AATTTGATCTC 1079
|||||||||||
Sbjct 1076 AATTTGATCTC 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43460125380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5