BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57920.1
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486243 jgi|Araly1|486243|fgenesh2_kg.5__2235__AT3G57920.1 1681 0.0
Ahg949608 jgi|Araly1|949608|scaffold_801495.1 54.7 2e-06
> Ahg486243 jgi|Araly1|486243|fgenesh2_kg.5__2235__AT3G57920.1
Length=1212
Score = 1681 bits (910), Expect = 0.0
Identities = 1148/1256 (91%), Gaps = 44/1256 (4%)
Strand=Plus/Plus
Query 28 TAAAAGATAGCAACATCTAAAATCTGCAAAACCACATTTTCTTTCCTCTATTCTCCTCCG 87
||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| |
Sbjct 1 TAAAAGATAGCAACATCTAAAATAAGCAAAACCACATTTTCGTTCCTCTCTTCTCCTCTG 60
Query 88 TCCTTACTATTTCCAGAGTTCAGTACTTAGAAAGAAAGAGAGTGATGAGCAGAAGCATCT 147
| | | ||| | | | | || | ||||||| ||||||||||||||| |
Sbjct 61 T-C---C--TTT-C-----T-A-T--TT---CA-AAAGAGA--GATGAGCAGAAGCATAT 98
Query 148 CTTTCTCTGTCTGAGTAAGAGGAAGCCAAAACCATAATGGAGTTGTTAATGTGTTCGGGT 207
||||| |||||||||||||||||| || ||||||||||||||||||||||| | ||||||
Sbjct 99 CTTTCACTGTCTGAGTAAGAGGAAACC-AAACCATAATGGAGTTGTTAATGGGCTCGGGT 157
Query 208 CAGGCCGAGTCAGGTGGTTCTTCTTCCACCGAGTCTTCTTCACTCAGTGGTGGACTCAGG 267
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 CAGGCAGAGTCAGGTGGTTCTTCTTCCACCGAGTCTTCTTCACTCAGTGGTGGACTCAGG 217
Query 268 TTTGGTCAGAAGATCTACTTCGAGGATGGATCCGGATCCAGAAGCAAGAACCGGGTCAAT 327
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 218 TTTGGTCAGAAGATCTACTTCGAGGATGGATCCGGATCCGGAAGCAAGAACCGGGTCAAT 277
Query 328 ACCGTTCGTAAGTCGTCTACCACGGCGAGGTGCCAAGTGGAAGGTTGTAGAATGGATCTA 387
|| | |||||||||| | | ||||||||||||||||||||||||||||||| |||||||
Sbjct 278 ACGGGTCGTAAGTCGACAATGACGGCGAGGTGCCAAGTGGAAGGTTGTAGAACGGATCTA 337
Query 388 AGCAATGTTAAAGCTTATTACTCGAGACACAAAGTTTGTTGCATTCACTCTAAATCATCT 447
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 338 AGCAATGTAAAAGCTTATTACTCAAGACACAAAGTTTGTTGCATTCACTCTAAATCATCT 397
Query 448 AAAGTCATTGTCTCTGGTCTTCATCAAAGGTTTTGTCAACAATGTAGCAGGTTTCACCAG 507
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 398 AAAGTCATTGTCTCTGGTCTTCATCAAAGGTTTTGCCAACAATGTAGCAGGTTTCACCAG 457
Query 508 CTTTCTGAGTTTGACTTGGAGAAAAGAAGTTGTCGCAGAAGACTCGCTTGTCATAACGAA 567
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 458 CTTTCTGAGTTTGACTTAGAGAAAAGAAGTTGTCGCAGACGACTCGCTTGTCATAACGAA 517
Query 568 CGACGAAGAAAACCACAACCCACAACGGCTCTTTTCACTTCTCATTACTCTCGAATCGCT 627
|| |||||||| ||||||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct 518 CGTCGAAGAAAGCCACAACCCACAACGTCTCTTTTCACTTCTCGTTACACTCGAATCGCT 577
Query 628 CCATCTCTTTACGGAAACCCCAATGCTGCAATGATTAAAAGCGTTTTGGGAGATCCTACT 687
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CCATCTCTTTACGGAAACCCCAATGCTGCAATGATTAAAAGCGTTTTGGGAGATCCTACG 637
Query 688 GCGTGGTCAACCGCAAGATCAGTGATGCAGCGGCCTGGACCGTGGCAGATTAATCCAGTT 747
|||||||||||||||| ||||||||||| |||| ||||||||||||||||||| || |
Sbjct 638 GCGTGGTCAACCGCAAAATCAGTGATGCGGCGGTCTGGACCGTGGCAGATTAACCCGGAA 697
Query 748 AGGGAAACCCATCCACACATGAATGTTTTATCACATGGAAGCTCAAGCTTTACTACATGT 807
||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 698 AGGGAAAGCCATCAACTTTTGAATGTTTTGTCACATGGAAGCTCAAGCTTTACTACATGT 757
Query 808 CCAGAGATGATAAACAACAATAGCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAAC 867
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 CCAGAGATCATAAACAACAATAGCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAAC 817
Query 868 TCATACCCAATTCATCAGCAGCAACTTCAGACACCAACAAATACATGGCGACCATCTTCT 927
||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 818 TCAAACCCAATTCAGCAGCAGCAACTTCAGACACCAACAAATTTGTGGCGACCATCTTCT 877
Query 928 GGTTTCGACTCGATGATCTCATTCTCCGATAAGGTTACAATGGCTCAGCCACCGCCCATT 987
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 878 GGTTTCGACTCGATGATCTCATTCTCTAATAGGGTTACAATGGCTCAGCCACCGCCCATT 937
Query 988 TCAACCCATCAGCCGCCCATCTCAACACATCAGCAGTACCTCAGCCAAACTTGGGAAGTC 1047
||||||||||| || | | ||||||||||||||||||||||||
Sbjct 938 TCAACCCATCA--------TC--A--------G---TACCTCAGCCAAACTTGGGAAGTC 976
Query 1048 ATCGCGGGCGAAAAGAGCAATTCACATTATATGTCTCCTGTGAGTCAAATCTCGGAGCCA 1107
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 977 ATGGCGGGCGAAAAGAGCAATTCACATTATATGTCTCCTGTGAGTCAAATCTCTGAGCCA 1036
Query 1108 GCAGATTTCCAGATAAGCAATGGCACCACAATGGGTGGATTTGAGCTGTATCTTCATCAG 1167
|| |||||||| || |||||||||||||||||||| ||||||||| ||| ||||||||||
Sbjct 1037 GCTGATTTCCAAATTAGCAATGGCACCACAATGGGCGGATTTGAGTTGTCTCTTCATCAG 1096
Query 1168 CAGGTTCTGAAGCAATACATGGAACCCGAGAACACAAGAGCTTATGACTCCTCTCCTCAA 1227
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1097 CAGGTTCTGAGGCAATACATGGAACCCGAGAACACAAGAGCTTATGACTCTTCTCCTCAA 1156
Query 1228 CATTTCAATTGGTCTCTTTGAGTCTAATCTCTTTCACCTTTTAAGATCTTCATCAG 1283
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1157 CATTTCAATTGGTCTCTTTGAGTCTAATCTCTTTCACCTTTTATGATCTTCATCAG 1212
> Ahg949608 jgi|Araly1|949608|scaffold_801495.1
Length=1117
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 475 AGGTTTTGTCAACAATGTAGCAGGTTTCA 503
|||||||||||||||||||||||||||||
Sbjct 438 AGGTTTTGTCAACAATGTAGCAGGTTTCA 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51542183784
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5