BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57930.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486245 jgi|Araly1|486245|fgenesh2_kg.5__2237__AT3G57930.1 1424 0.0
> Ahg486245 jgi|Araly1|486245|fgenesh2_kg.5__2237__AT3G57930.1
Length=1018
Score = 1424 bits (771), Expect = 0.0
Identities = 954/1037 (92%), Gaps = 34/1037 (3%)
Strand=Plus/Plus
Query 5 GTGAGAAGAAAAAGCGTCATTCTTACGTTTTTCTTTTAAGTTTCACTCAGAGACAGAAGC 64
|||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct 1 GTGAGAAGAAAAAGCGTCATTCTTACGTTTTTTTTTTTAGTTTCACTCACAGACAGAAGC 60
Query 65 TAGAACAAAGAAAAGAGAAGCCTTTTGAAAGCAATCAACTTTAATCTTTTTCAACCAACA 124
| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 T--AAGAAA-AAAAGAGAAGCCTTTTGAAAGCAATCAACTTTAATCTTTTTCAACCAACA 117
Query 125 CTAGTACTCTAGCTGTTGctctttctcttcgttttcttccttccttcttctcttagatct 184
|||||||| || ||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 118 CTAGTACT-AAGTTGTTGCTCTTTCTCTTC--CTTCCTCCTT-GTTCTTCTCTTAGATCT 173
Query 185 ctttcttttaacttgagtcttatcctttggatttttaTTCGATTTGA-TTCCTCCG-TTT 242
||| ||||| |||||||||||||||||||||||||||||||||| || |||||| | |||
Sbjct 174 CTTCCTTTTTACTTGAGTCTTATCCTTTGGATTTTTATTCGATTCGATTTCCTCTGTTTT 233
Query 243 GGTTTGGTCAGTTTTC-TTTAGACTCTTAGTCTTTCCTCTGATCTGGGTTTTAGCTGTAG 301
||||| ||||||||| |||||| | || | ||||||||||| |||| | |||||
Sbjct 234 GGTTTTATCAGTTTTCTTTTAGA-----A-TC--T-CTCTGATCTGGCTTTTTGTTGTAG 284
Query 302 AAACTCGTGAGTTAGATCGATTGAGAACCC-AACTAT-AAATTAGTAAAAAGAGAAACCC 359
||||| |||||||||||||||| | ||||| ||| || ||||| ||||||||||||||||
Sbjct 285 AAACTTGTGAGTTAGATCGATTCAAAACCCAAAC-ATAAAATTTGTAAAAAGAGAAACCC 343
Query 360 TTTATAGGTTTTTTGGGGTTTTTG--T-CTCAGTCTGACCAATGGGTTCACAGGTTTCTT 416
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 344 TTTATAGGTTTTTTGGGGTTTTTGTCTCCTCAGTCTGACCAATGGGTTCACAGGTTTCTT 403
Query 417 GTCTAGTTGCTTGAGG-TTTTTGGTTTTTGG-TTTGAATAGAGTTATGAGAAGAGGTAGA 474
|| ||||||||||||| |||| |||| ||| |||||||||||||||||||||||||||
Sbjct 404 GTGTAGTTGCTTGAGGCTTTTGGGTTGGTGGAGTTGAATAGAGTTATGAGAAGAGGTAGA 463
Query 475 GGAAAAGGCAAGAGGCAGAATGCTACTGCTAGAGAAGATCGAGGGAGCGGCGAGGAAGAA 534
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 464 GGAAAAGGCAAGAGGCAGAATGCTACTGCTAGAGAAGATCGAGGGAGCGGTGAAGAAGAA 523
Query 535 AAGATTCCAGCTTTTAGGAAAAGAGGGAGGCCACagaagccggtgaaagatg-aa--gaa 591
||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 524 AAGATTCCAGCTTTTAGGAGAAGAGGGAGGCCACAGAAGCCGGTGAAAGATGAAATCGAA 583
Query 592 gaagaagaagaagagctagtgaagaagacagatgaggaagaagacaagGATGATGATACA 651
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 584 GAAGAAGAAGTAGAGCTAGTGAAGAAGACAGAAGAGGAAGAAGACAAGGATGATGATACA 643
Query 652 AATGGTTCAGTAACAAGTAAAGAAAATGTGACAGAGAATGGGAGGAAGAGGAAGAAACCA 711
|||||||| |||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 644 AATGGTTCTGTAACAAGTAAACAAGATATGACAGAGAATGGGAGGAAGAGGAAGAAACCA 703
Query 712 GTGGAGTCTAAAGAGAGCAACATAACTGAAGAAGAGAATGGGGTAGGGTCAAAATCAAGC 771
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 704 GTAGAGTCTAAAGAGAGCAACATAACTGAAGAAGAGAATGGGGTAGGATCAAAATCAAGC 763
Query 772 ACAGAAGATTCTATGAAATCATCGTCGTCTATTGGGTTTAGGCAGAATGGGAGCAGAAGG 831
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 ACGGAAGATTCGATGAAATCATCGTCGTCTATTGGGTTTAGGCAGAATGGGAGCAGAAGG 823
Query 832 AAGAACAAACCAAGACGAGCTGCTGAAGCTGTTGTTGAATGTAATGGGGTTTGAAAAGAG 891
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 824 AAGAACAAACCAAGACGAGCTGCTGAAGCTGTTGTTGAATGTAATGGGGTTTGAAAAGTG 883
Query 892 GTTCTTAA--CGCTTTTGAAACCGCCtttttggtattttttttgttgtttttGTTAGATA 949
|||||||| ||||| |||||||||||||||||| |||||||| |||| || ||| ||||
Sbjct 884 GTTCTTAAAACGCTTCTGAAACCGCCTTTTTGGTGTTTTTTTT-TTGTGTT-GTTGGATA 941
Query 950 CTTTTGCTGTTATAAACCCGAGTTTGATGCGGGTGCGTTCTGGTTTCATTACATGGAATC 1009
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 942 CTTTTGCTGTTAGAAACCCGAGTTTGATGCGGGTGCGTTTTGGTTTCATTACATGGAATC 1001
Query 1010 AAAACTTCGATTTTTCG 1026
| || ||||||||||||
Sbjct 1002 AGAATTTCGATTTTTCG 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5