BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57950.1
Length=546
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486247 jgi|Araly1|486247|fgenesh2_kg.5__2239__AT3G57950.1 793 0.0
> Ahg486247 jgi|Araly1|486247|fgenesh2_kg.5__2239__AT3G57950.1
Length=539
Score = 793 bits (429), Expect = 0.0
Identities = 512/549 (93%), Gaps = 17/549 (3%)
Strand=Plus/Plus
Query 1 ATGCAGCTCAAATCATCATCACCAtcttcttcttcttcttcttcATCATCATCCATGAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAGCTCAAATCATCATCACCATCTTCTTCTTCTTCTTCTTCATCATCATCCATGAAA 60
Query 61 CTCAAAACTCTAATCCAAAACCTCCTCACACACCCTCTCTACCGTTTCCTAAGAGCTCTT 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCAAAACTCTAATCCAAAATCTCCTCACACACCCTCTCTACCGTTTCCTAAGAGCTCTT 120
Query 121 GCGAAAGCCAAATCAATCTTTCTAGAGATCTC---A-A-AAC-ACAACAGCAACAACAAG 174
|||| ||||||||||||||||||||||||||| | | ||| |||||| ||||||||||
Sbjct 121 GCGAGAGCCAAATCAATCTTTCTAGAGATCTCAAAACACAACAACAACAACAACAACAAG 180
Query 175 AAACGAAAACTCATGATGCTTTTTCCAACAAAGGCTTCAAAGAACCAACGCAAGATCTTC 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAACGAAAACTCATGATGCTTTTTCCAACAAAGGCTTCAAAGAACCAACGCAAGATCTTC 240
Query 235 TTCGGATCTTTCAGATTGCATTACAACTGGTGTTCCTCTCATGTTGTTCCTGTCCCTCAA 294
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 241 TTCGGATCTTTCAGATTGCATTACAATTGGTGTTCCTCTCATGTTGCTCCTGTCCCTCAA 300
Query 295 CCGTTTCCTTTCCCTTCTTCTTACATCAATGGTGAAGAAGAAGATGATTCTCAGCTTTCT 354
|| |||||||||||||| |||||||| ||||||| ||||| ||||| |||||||| |||
Sbjct 301 CCTTTTCCTTTCCCTTCGTCTTACATTAATGGTGGGGAAGATGATGACTCTCAGCTCTCT 360
Query 355 GGCTACCTCGAGTGGCTTGAACACAAGAA-GTTCGATGATGTGGAAGAGATCGGAGATGT 413
|| |||||||||||||| ||||| ||||| || ||| |||||||||||||| |||||||
Sbjct 361 GGTTACCTCGAGTGGCTCGAACAAAAGAAAGT-CGAAGATGTGGAAGAGATTAGAGATGT 419
Query 414 TGTAGCTGATGGTGGTGATGACGATATTGATCATTTGGCGGATATGTTCATCGCTAATTG 473
||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 TGTAGCTGATG------ATGA---TATTGATCATTTGGCGGATATGTTCATCGCTAATTG 470
Query 474 CCACGAGAAGTTCTTGCTCGAGAAAGTTGAATCTTACCGGAGATTTCAAGAAATGTTAGA 533
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 471 CCACGAGAAGTTCTTGCTCGAGAAAGTTGAATCTTACAGGAGATTTCAAGAAATGTTAGA 530
Query 534 AAGGGGTTT 542
|||||||||
Sbjct 531 AAGGGGTTT 539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19917217458
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5