BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57960.1
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938779 jgi|Araly1|938779|scaffold_502970.1 785 0.0
> Ahg938779 jgi|Araly1|938779|scaffold_502970.1
Length=864
Score = 785 bits (425), Expect = 0.0
Identities = 580/654 (89%), Gaps = 14/654 (2%)
Strand=Plus/Plus
Query 23 ACATAGCATATGAGTCTGACTCCAGCAGCGATAGCAGTGACGAAGGAGATGTGCCGTGTT 82
|||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 178 ACATAGCACCCGAGTCTGACTCCAGCAGCGACAGCAGTGACGAAGGAGATGTGGCGTGTT 237
Query 83 TACCCAAGGATGAGGTCAATGAAAG-GAAACTCCAA-AATCTCCAGAGAAAAGCTTTCTA 140
||||| || | ||||||||| |||| || ||||||| || ||||||| ||||||||||||
Sbjct 238 TACCCGAGAAAGAGGTCAAT-AAAGAGACACTCCAAGAA-CTCCAGAAAAAAGCTTTCTA 295
Query 141 CAATCTTCTCCAAACTTTCGCTTTCGAAAACTCCACAATGTCAAACAAGAGGACTGAGAT 200
| |||||||||| |||||||||| |||| ||| ||||||||||||||||||||| ||||
Sbjct 296 CTCTCTTCTCCAAGCTTTCGCTTTAGAAACCTCGACAATGTCAAACAAGAGGACTCAGAT 355
Query 201 CATAGGAAAACTGATGAACGAGTGGGGGATTGCTAACGAAACTCATATCTCCTTTGCGGA 260
||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 356 CATAGAAAAACTGATGAACGAGTGGGGGATTGCTAACGAAACTCAAATCTCTTTTGCGGA 415
Query 261 TCAGATTCAGAAGAAACTTCTGACTCTAAAACAAACGAAGCATTCTGGTGTGAAGGAAAC 320
|||||||||||||||||||||||| ||| |||||| |||| |||||| | |||||||||
Sbjct 416 TCAGATTCAGAAGAAACTTCTGACCCTACAACAAATGAAGGATTCTGATAAGAAGGAAAC 475
Query 321 GCAG--A-TACCAGCGACGCCATT-GACCAACACTGCAACGCCGAGTACGTTTTTTGTTC 376
|||| | |||||| ||||||||| | || || ||||||||| |||| | |||||||
Sbjct 476 GCAGATACTACCAGAGACGCCATTGGCCCCAC-CTGCAACGCAGAGTTGGACATTTGTTC 534
Query 377 CTAAACCTGTCAAAAGCTGGGGCAGTGTTAATCCAGAGTCTCTTATTGGAAAATGGGTCA 436
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 535 CTAAACCTGGCAAAAGCTGGGGCAGTGTTAATCCTGAGTCTCTTATTGGAAAATGGGTCA 594
Query 437 GTATAAGGCTTCCTGATAAAGCTAAGTTCACTGAATACATCATCAAAGCATATGATGCGG 496
|||| ||||| |||||| ||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 595 GTATGAGGCTGCCTGATGAAGCTGATTTCGCTGAATACATCATCAAAGCATATGATGCGG 654
Query 497 AAAAGGAAATGCATAGCCTATTGACCG-AAACCTCGAACCCAATGGAGGTTGATTGCATT 555
||||||||||||||||| || ||| || | | ||||| |||||||||||||| |||||
Sbjct 655 AAAAGGAAATGCATAGCATAGTGAACGCAGA-GTCGAATGCAATGGAGGTTGATGGCATT 713
Query 556 GACCCGTTTAGATGGATAGATATCAGAGATATTTCGCCTAACGATATCATGTGGGAAGGT 615
|| |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 714 GATCCGTTTAGCTGGATAGATATCAGAGAAATTGCGCCTAACGATATCATGTGGGAAGGT 773
Query 616 GGACAAAAGCCAAACTTTGCTGCTCCCAACCAATCTGCTGCAGCTACAGGTCAA 669
|||||||||||||| |||| | |||||||||||||||| |||||||| ||||
Sbjct 774 GGACAAAAGCCAAAGTTTGATACTCCCAACCAATCTGC---AGCTACAGCTCAA 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24665527299
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5