BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57980.1
Length=1899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898746 jgi|Araly1|898746|Al_scaffold_0005_2712 2756 0.0
> Ahg898746 jgi|Araly1|898746|Al_scaffold_0005_2712
Length=1890
Score = 2756 bits (1492), Expect = 0.0
Identities = 1778/1912 (93%), Gaps = 35/1912 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGAGCTCCTCCTCGCCTGCGCCGTTCACCGTCACGGTACTGATTCATGGGACTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAGCTCCTCCTCGCCTGCGCCGTTCACCGTCACGGTACTGATTCATGGGACTCC 60
Query 61 GTCGCTTCTGAAGTCCATAAACAGAACTCCACTTTTCGTACACTCACCGCCATCGACTGT 120
|||||||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||
Sbjct 61 GTCGCTTCTGAAATCCATAAGCAGAACCCCACTGTTCGTACACTCACCGCCATCGACTGT 120
Query 121 CGTCACAAGTACAACGATCTCAAGCGCCGATTCTCCCGTAACCTGGTCTCGCCAGGATCT 180
||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||
Sbjct 121 CGTCACAAGTACAACGATCTCAAGCACCGATTCTCCTGTAACCTGGTCTCGCCGGGATCT 180
Query 181 GCCG-A--TGAAG-A-A-ACCCTCGCCGCCGAGATCTCTTCCGTTCCTTGGCTTGAGGAG 234
|| | | |||| | | || |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCAGAAGGAGAAGAAGATACTCTCGCCGCCGAGATCTCTTCCGTTCCTTGGCTTGAGGAG 240
Query 235 TTGAGAAAGCTCCGTGTCGATGAACTCCGACGAGAAGTCGAACGTTACGATCTATCCATC 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGAGAAAGCTCCGTGTCGATGAACTCCGACGAGAAGTCGAACGTTACGATCTATCCATC 300
Query 295 TCGTCATTGCAGTTGAAGGTGAAAACATTGGAAGATGAAAGAGAGAAGAGCTTGAAAACT 354
||||| |||||| |||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 301 TCGTCCTTGCAGCTGAAGGTGAAGAGATTGGAAGATGAGAGAGAGAAGAGCTTGAAAACC 360
Query 355 GAGAATTCAGATCTAGATAGAATCGCGGAGACGAAAGAGAACCACACTGAATCGGGCAAC 414
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||
Sbjct 361 GAGAATTCAGATCTAGATAAAATCGCGGAGACGAAAGAGAACCACAGTGAATCGGGAAAC 420
Query 415 AACTCCGGCGTACCGGTTACTGAGCTGAAAAATTCTCCAGATCCGAATGATAATAGTCCT 474
|| |||||||||||||| | |||| || ||||||||||||||||| ||||||||||||
Sbjct 421 AAATCCGGCGTACCGGTCGCCGAGCCGACAAATTCTCCAGATCCGATTGATAATAGTCCC 480
Query 475 GGAACCGGATCTGAGAACACGAACAGAGCTGTTAAAATCGCTGAACCAGTGGACGAAGAA 534
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 481 GGAACCGGATCTGAAAACACGAACAGAGATGTTAAAATCGCTGAACCAGTGGACGAAGAA 540
Query 535 CCGAACCGGATCGGCGGAGAAGACAACGACGAGAAGCCGG-CAAGAGAGGATTCGGGTAG 593
||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct 541 CCGAACCGGAT---------------CGACGAGAAGCCGGTC-AGAGAGGATTCGGGTAG 584
Query 594 AGGAAGTTGCGAGAGCGTGGCGAAGGAATCGGATAGAGCAGAACCAAAAAGAGAGGGAAA 653
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct 585 AGGAAGTTGCGAGAGCGTGGCCAAGGAATCGGATAGAGCAGAACCAGAAAGAGAGGGAGA 644
Query 654 TGACTCGCCTGAGTTAGTTGAGTCAATGGACGAGTCGAAAGGAGAGGAAGATACGAAAGA 713
||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 645 TGACTCGCCCGAGTTCGTTGAGTCAATGGACGAGTCGAAAGGAGAGGAAGATAGGAAAGA 704
Query 714 AACGAGTGATGGGCAGAGCTCGGCGAGCTTCCCGAGAAAGGAGACGGTAGACCAAGACCA 773
|||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct 705 AACGAGTGATGGGCAGAGCTCGGCGAGCTTACCGAGAAAGGAGACGGTAAACCAGGACCA 764
Query 774 ACCGGATAACAAAGATCAATCTCTCACCGTCAATAAGATCTTCGTTGAATCTCAGCCGTT 833
|||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||
Sbjct 765 ACCGGATAACGAAGATCAATCTCTGACCGTCAATAAGATCCCCGCTGAATCTCAGCCGTT 824
Query 834 GAGTGATTTCATCGAGATTCTTCAGTCTCACCCCATTGGCTCTCACTTTTCGCGCCGGCT 893
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GATTGATTTCATCGAGATTCTTCAGTCTCACCCCATTGGCTCTCACTTTTCGCGCCGGCT 884
Query 894 CGAAACCCAGGAAACATCCGACTACTATAGGATAATAAGGCAACACATAGACTTTGAGAT 953
||||| ||||||||||||||| ||| | |||||||||||||| |||||||||||||||||
Sbjct 885 CGAAAGCCAGGAAACATCCGAGTACGAAAGGATAATAAGGCAGCACATAGACTTTGAGAT 944
Query 954 GATTCGAAGTCGTGTGGAAGAGGGTTACTACAAAA-CTGCCAGGACCAAGTTT-TTTCGG 1011
||||||||||||||||||||| ||||||||||||| || |||||| ||| ||| ||||||
Sbjct 945 GATTCGAAGTCGTGTGGAAGAAGGTTACTACAAAACCT-CCAGGAGCAA-TTTCTTTCGG 1002
Query 1012 GATTTACTGCTACTAATCAACAATGTGAGAGTTTTCTATGGCGAGCCATCGCCTGAGTTT 1071
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1003 GATTTACTGCTACTAGTCAACAATGTGAGAGTTTTCTATGGCGAGCCATCTTCTGAGTTT 1062
Query 1072 AATG-CAGCAAAACAGCTTTACCAACTCATCAAGAAACAGATGAGT-TTCAAGATTCCTA 1129
|||| || |||| ||||||||||| || |||||||||||||||||| || ||||||||||
Sbjct 1063 AATGTCA-CAAAGCAGCTTTACCAGCTTATCAAGAAACAGATGAGTCTT-AAGATTCCTA 1120
Query 1130 AACAAACCTTACCACCACCAAAAG-AGGATGCCTTGGTGACGTCTAAGGAGGAAGTCAAA 1188
|||||||||||||| ||||||||| || || ||||||||||||||||||||||||||| |
Sbjct 1121 AACAAACCTTACCAACACCAAAAGAAGAAT-CCTTGGTGACGTCTAAGGAGGAAGTCACA 1179
Query 1189 GTCTCTTCTCTTAAACCAACACTTTCAGTGCCTATTATAGCTTGTCGGAAACGTAGTTCC 1248
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 GTCTCTTCTCTAAAACCAACACTTTCAGTGCCTATTATAGCTTGTCGGAAACGTAGTTCC 1239
Query 1249 TTGGCTGTTAGATCTCCAGCGTCAGTCACTGAAACTTTGAAGAAAAAGACTAGAGTAGTT 1308
||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1240 TTGGCTGTTAGATCTTCAGCGTCTGTCACTGAAACTTTGAAGAAAAAGACTAAAGTAGTT 1299
Query 1309 CCAACAGTTGATGAGAAGCAAGTTTCAGAAGAGGAGGAAG-GGAGACCCTCTGATAAAGA 1367
|||||||| |||||||||| |||||||||||||||||||| || | |||||||||||||
Sbjct 1300 CCAACAGTCGATGAGAAGCCAGTTTCAGAAGAGGAGGAAGATGA-AACCTCTGATAAAGA 1358
Query 1368 TGAGAAACCTATTGTTTCTAAGAAGATGGCTAGAGGAGCAGCACCCTCAACAGCTAAAAA 1427
|| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1359 TGTGAAACCTATTGTTTCTAAGAAGATGACTAGAGGAGGAGCACCCTCAACAGCTAAAAA 1418
Query 1428 AGTAGGGAGCAGAAACGTTAAGACCAGTTTGAATGCTGGTATCTCTAATAGAGGCCGATC 1487
|||||||||| ||||||||| ||||||||||||||||||||||||| || |||||| ||
Sbjct 1419 TGTAGGGAGCACAAACGTTAACACCAGTTTGAATGCTGGTATCTCTAGTAAAGGCCGGTC 1478
Query 1488 TCCAAACGGTAGCTCTGTGCTGAAGAAAAGTGTTCAACAAAAGAAGGGTATCAACACCAG 1547
| |||||| ||||||||||| |||||||||||||||| |||||||||||| |||| | ||
Sbjct 1479 TTCAAACGATAGCTCTGTGCCGAAGAAAAGTGTTCAAGAAAAGAAGGGTAACAACGCTAG 1538
Query 1548 TGGTGGCTCAAAAAAGCAAAGTGCTGCTAGTTTTCTTAAGAGAATGAAAGGGGTTTCATC 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 TGGTGGCTCAAAAAAGCAAAGTGCTGCTAGTTTTCTTAAGAGAATGAAAGGGGTTTCATC 1598
Query 1608 ATCTGAAACAGTCGTAGAGACAGTGAAGGCTGAATCCTCTAATGGAAAGAGAGGAGCTGA 1667
||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1599 ATCTGAAACCGTAGTAGATACAGTGAAGGCTGATTCCTCTAATGGAAAGAGAGGAGCTGA 1658
Query 1668 ACAGAGGAAAAGTAATAGTAAGAGTGAGAAAGTGGATGCAGTAAAACTGCCTGCTGGTCA 1727
||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||
Sbjct 1659 ACAGAGGAAAAGTAATAGTAAGAATGACAAAGTGGATGCAGTAAAACAGCCTGCTGGTCA 1718
Query 1728 GAAACGATTAACTGGGAAAAGGCCAACAATTGAAAAGGGTAGTCCTACAAAGAAAAACAG 1787
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1719 GAAACGATTAACTGGGAAAAAGCCAACAATTGAAAAGGGTAGTCCTGCAAAGAAAAACAC 1778
Query 1788 TGGTGTCGCCTCTAAAAGAGGCACTGCTTCTCTGATGGCAAAGCGGGACAGTGAAACTAG 1847
||||| |||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 1779 TGGTGCCGCCTCTAAAAGAGGCACTGCTCCTCTAATGACAAAGCGGGACAGTGAAACTAG 1838
Query 1848 TGAAAAGGAAACAGGTTCTTCTACTCGTCCGAAGAAGCGTTCAAAGAGGTGA 1899
|||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1839 TGAAAAGGAAACAGGTTCTTCTACTCGTCCGAAGAAACGTTCAAAGAGGTGA 1890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71343028885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5