BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58000.1
Length=528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938783 jgi|Araly1|938783|scaffold_502974.1 893 0.0
> Ahg938783 jgi|Araly1|938783|scaffold_502974.1
Length=568
Score = 893 bits (483), Expect = 0.0
Identities = 513/528 (97%), Gaps = 0/528 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGCCACGATCTTCGAGAAAAGAAGAAGCTCGTTATCAAGCATAGCGGTGCACAAA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 21 ATGGAAGCCACGATCTTCGAGAAAAGAAGAAGCTCATTATCAAGCATAGCGGTGCACAAA 80
Query 61 CAGTCATACTCGATAACCAAATCAAAGCCAAAGATCCGTATAATTCACATATTTGCTCCG 120
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CAGTCATACTCCATAACCAAATCAAAGCCAAAGATCCGTATAATTCACATATTTGCTCCT 140
Query 121 GAGATCATCAAGACCGACGTTGCCAACTTCCGTGAGCTCGTCCAAAGCCTCACCGGCAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 GAGATCATCAAGACCGACGTTGCCAACTTCCGTGAGCTCGTCCAAAGCCTCACCGGCAAA 200
Query 181 CCAGACGACCAGAGAACTTCCAAGGCAAAACCTAGAAGAGATATGCATCGTCTTCATCGT 240
||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 201 CCAGACGACCACAGAACTTCAAAAACAAAACCTAGAAGAGATATGCATCGTCTTCATCGT 260
Query 241 CAAGTCCAAGACATGATCAACACGGAGAAACTAAGAGAACCCGAGCATTGTGATCAAGAG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 261 CAAGTCCAAGACATGATCAACACGGAGAAACTAAGAGAACCCGAGCATTGTGATCAAGGG 320
Query 301 TTCTGCTTAAACGCAGAAGAGCTCTCGATGACTTGGAACGGTAATAATGGCGCTGGTGAA 360
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 321 TTCTGCTTAAATTCAGAAGAGATCTCGATGACTTGGAACGGTAATAATGGCGCTGGTGAA 380
Query 361 AGCTCTGGAGGGTTCTTGAATGGTTTGGGAGATTTCGAAGGGTTTATTCAAGAACTTGGT 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 AGCTCCGGAGGGTTCTTGAATGGTTTGGGAGATTTCGAAGGGTTTATTCAAGAACTTGGT 440
Query 421 GAATTTCCTTATTTGCCCTTGTCCTCCATTGATGCTTCTGCTTCTTCTAACTCCTCTTCT 480
|||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 441 GAATTTCCGTATTTGCCCTTGTCCTCCATGGATGCTTCTGCTTCTTCTAATTCCTCTTCT 500
Query 481 TCCTCTCATTTACATGGTGGATCAGTTTTCTCAGATCAATTCGCTTAA 528
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TCCTCTCATTTACATGGTGGATCAGTTTTCTCAGATCAATTCGCTTAA 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19230416856
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5