BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G58000.1 Length=528 Score E Sequences producing significant alignments: (Bits) Value Ahg938783 jgi|Araly1|938783|scaffold_502974.1 893 0.0 > Ahg938783 jgi|Araly1|938783|scaffold_502974.1 Length=568 Score = 893 bits (483), Expect = 0.0 Identities = 513/528 (97%), Gaps = 0/528 (0%) Strand=Plus/Plus Query 1 ATGGAAGCCACGATCTTCGAGAAAAGAAGAAGCTCGTTATCAAGCATAGCGGTGCACAAA 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 21 ATGGAAGCCACGATCTTCGAGAAAAGAAGAAGCTCATTATCAAGCATAGCGGTGCACAAA 80 Query 61 CAGTCATACTCGATAACCAAATCAAAGCCAAAGATCCGTATAATTCACATATTTGCTCCG 120 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 CAGTCATACTCCATAACCAAATCAAAGCCAAAGATCCGTATAATTCACATATTTGCTCCT 140 Query 121 GAGATCATCAAGACCGACGTTGCCAACTTCCGTGAGCTCGTCCAAAGCCTCACCGGCAAA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 GAGATCATCAAGACCGACGTTGCCAACTTCCGTGAGCTCGTCCAAAGCCTCACCGGCAAA 200 Query 181 CCAGACGACCAGAGAACTTCCAAGGCAAAACCTAGAAGAGATATGCATCGTCTTCATCGT 240 ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 201 CCAGACGACCACAGAACTTCAAAAACAAAACCTAGAAGAGATATGCATCGTCTTCATCGT 260 Query 241 CAAGTCCAAGACATGATCAACACGGAGAAACTAAGAGAACCCGAGCATTGTGATCAAGAG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 261 CAAGTCCAAGACATGATCAACACGGAGAAACTAAGAGAACCCGAGCATTGTGATCAAGGG 320 Query 301 TTCTGCTTAAACGCAGAAGAGCTCTCGATGACTTGGAACGGTAATAATGGCGCTGGTGAA 360 ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 321 TTCTGCTTAAATTCAGAAGAGATCTCGATGACTTGGAACGGTAATAATGGCGCTGGTGAA 380 Query 361 AGCTCTGGAGGGTTCTTGAATGGTTTGGGAGATTTCGAAGGGTTTATTCAAGAACTTGGT 420 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 AGCTCCGGAGGGTTCTTGAATGGTTTGGGAGATTTCGAAGGGTTTATTCAAGAACTTGGT 440 Query 421 GAATTTCCTTATTTGCCCTTGTCCTCCATTGATGCTTCTGCTTCTTCTAACTCCTCTTCT 480 |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 441 GAATTTCCGTATTTGCCCTTGTCCTCCATGGATGCTTCTGCTTCTTCTAATTCCTCTTCT 500 Query 481 TCCTCTCATTTACATGGTGGATCAGTTTTCTCAGATCAATTCGCTTAA 528 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 501 TCCTCTCATTTACATGGTGGATCAGTTTTCTCAGATCAATTCGCTTAA 548 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19230416856 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5