BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58010.1
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486251 jgi|Araly1|486251|fgenesh2_kg.5__2243__AT3G58010.1 1637 0.0
Ahg483302 jgi|Araly1|483302|fgenesh2_kg.4__2362__AT2G42130.4 601 4e-171
Ahg933062 jgi|Araly1|933062|scaffold_401050.1 351 5e-96
> Ahg486251 jgi|Araly1|486251|fgenesh2_kg.5__2243__AT3G58010.1
Length=1098
Score = 1637 bits (886), Expect = 0.0
Identities = 983/1030 (95%), Gaps = 6/1030 (1%)
Strand=Plus/Plus
Query 103 TTCAATGGCATTGATCCAACATGGTTCGGTTTCTGGGACCTCTGCGGTTCGATTGAGCTT 162
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 2 TTCAATGGCATTGATCCAACGTGGTTCGGTATCTGGGACCTCTGCGGTTCGATTGAGCTT 61
Query 163 CTCATCCTCTGTATCACCACCGTCGTCTTCTCCTCCACTGTCAAGGGTTTCTCTCAATTT 222
||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 62 CTCATCCTCCGTATCACCAACGTCGTCTTCTCCTCCACCGTCAAGGGTTTCTCTCAATTT 121
Query 223 TCAGTCGGAGAAGAAGAGTTGTTACCGGAGAATGATATGCAGAGCTATGGTTCAAGACTC 282
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 122 TCAGTCGGAGAAGAAGAGTTGTTGCCGGAGAATGATATGCAGAGCTATGGTTCAAGACAC 181
Query 283 GGTTCAAGGGATTCCTTCAGTTTACGCCAGAGAAATGGAGCGTCTCTCTGCTAAGGAATC 342
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GGTTCAAGGGATTCCTTCGGTTTACGCCAGAGAAATGGAGCGTCTCTCTGCTAAGGAATC 241
Query 343 GCTTATTCTCGCCTTCAATGATGCTGGAGGATTTGAGGCTCTAGTTACAGGGAAGATCAC 402
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 242 GCTTATTCTCGCCTTCAATGATGCTGGGGGATTTGAGGCTCTAGTTACTGGGAAGATCAC 301
Query 403 TGATATGCAAAAGATTGATGTCAATGAAAGGATAACGAATCTTGAGCGGCTTAATCCAAC 462
||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||
Sbjct 302 TGATATGCAAAAGATTGATGTGAATGAGAGGATAACCACTCTTGAGCGGCTTAATCCAAC 361
Query 463 TCCTAGACCAACCACGTCTCCTTATCTTGAAGGTAGATGGAGTTTTGAGTGGTTTGGAGT 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 362 TCCTAGACCAACCACGTCTCCTTATCTTGAAGGTAGATGGAGTTTTGAGTGGTTTGGA-T 420
Query 523 C-AACACTCCTGGTTCTCTTGCTGTTCGGGTTATGTTCGAGAGGTTCCCTTCGACATTGG 581
| || || |||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 421 CTAATACGCCTGGTTCACTTGCTGTTCGGGTTATATTCGAGAGGTTTCCTTCGACATTGG 480
Query 582 TGAGTCTATCCAATATGGAAATA-TTCATTAAAGATAATAACACAAAGGCAACAGCAAAC 640
|||||||||||| |||||| ||| || ||||| ||||||||||||| |||||||||||||
Sbjct 481 TGAGTCTATCCAGTATGGAGATAGTT-ATTAAGGATAATAACACAATGGCAACAGCAAAC 539
Query 641 ATCAAACTCCTAAACTCGATAGAAAACAAAATCACCCTGTCATCGAAATTGACAATAGAA 700
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 ATCAAACTCCTAAACTCGATAGAAAACAAAATCATCCTGTCATCGAAATTGACAATAGAA 599
Query 701 GGGCCTTTAAGGATGAAAGAAGAGTATTTAGAGGGATTGCTCGAGTCGCCAACGGTTATT 760
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 GGGCCTTTAAGGATGAAAGAAGAGTATTTAGAGGGAATGCTCGAGTCGCCAACGGTTATT 659
Query 761 GAAGAAGCAGTACCTGACCAACTAAGAGGTTTATTGGGTCAAGCTACTACCACGTTGCAA 820
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 660 GAAGAAGCAGTACCTGACCAGCTAAGAGGTTTATTGGGTCAAGCTTCTACCACGTTGCAG 719
Query 821 CAGCTTCCTGAACCTATCAAAGATACTCTAGCCAATGGTCTAAGAATCCCCCTTGGTGGA 880
|||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 720 CAGCTTCCTGCACCTATCAAGGATACTCTAGCCAATGGTCTAAGAATTCCCCTTGGTGGA 779
Query 881 ACTTACCAAAGATTCTTCATGATATCTTATCTAGACGACGAGATTCTTATTGTAAGAGAT 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACTTACCAAAGATTCTTCATGATATCTTATCTAGACGACGAGATTCTTATTGTAAGAGAT 839
Query 941 ACCGCAGGAGTGCCTGAAGTTCTAACGAGGGTGGAAACATCGTCTCCGATGTCTTCATCG 1000
|||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||
Sbjct 840 ACCGCAGGAGTGCCTGAAGTTCTAACAAGGGTTGAAACATCGTCTTCGATGTCTTCATCG 899
Query 1001 AGTGTTGTAGAGAATCTTGAATACAACAGTTAAAAACAGGTTCTCTTGTTACTCTGATTC 1060
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 AGCGTTGTAGAGAATCTTGAATACAACAGTTAAAAACAGTTTCTCTTGTTACTCTGATTC 959
Query 1061 TCTCTGTAAATGTAAGAACAAAAAGTGTATACAACTTACCGACCTCA-CTATAGTATATC 1119
|||||||||||||||||||||||||||||| ||||||||| |||||| | | ||||||||
Sbjct 960 TCTCTGTAAATGTAAGAACAAAAAGTGTATCCAACTTACCAACCTCAAC-ACAGTATATC 1018
Query 1120 TCCGGACACA 1129
|||| ||||
Sbjct 1019 ACCGGCCACA 1028
> Ahg483302 jgi|Araly1|483302|fgenesh2_kg.4__2362__AT2G42130.4
Length=1090
Score = 601 bits (325), Expect = 4e-171
Identities = 612/748 (82%), Gaps = 30/748 (4%)
Strand=Plus/Plus
Query 247 CCGGAGAATGA-TATGCAGAGCTATGGTTCAAGACTCGGTTCAAGGGAT-TCCTTCAGTT 304
|||||||| || | | ||||| ||||| || || | ||| | |||| |||||| |||
Sbjct 172 CCGGAGAA-GAGTTTTAAGAGCAATGGTGCAGGAAACAGTTTTA-GGATCTCCTTCGGTT 229
Query 305 TACGCCAGAGAAATGGAGCGTCTCTCTGCTAAGGAATCGCTTA-TTCTCGCCTTCAATGA 363
|||||||||||||||||||| || |||||||||||||||| || ||||||| || || ||
Sbjct 230 TACGCCAGAGAAATGGAGCGCCTTTCTGCTAAGGAATCGC-TAGTTCTCGCTTTGAAGGA 288
Query 364 TGCTGGAGGATTTGAGGCTCTAGTTACAGGGAAGATC-ACTGATATGCAAAAGATTGATG 422
||||||||| ||||||||| ||||||||||||| | | ||| ||||||||| ||| ||||
Sbjct 289 TGCTGGAGGCTTTGAGGCTTTAGTTACAGGGAA-AACAACTAATATGCAAAGGATCGATG 347
Query 423 TCAATGAAAGGATAACGAATCTTGAGCGGCTTAATCCAACTCCTAGACCAACCACGTCTC 482
| ||||| || || || | ||| ||||||||||| || ||||||||||||||||||||||
Sbjct 348 TGAATGAGAGAATTACTAGTCTAGAGCGGCTTAACCCGACTCCTAGACCAACCACGTCTC 407
Query 483 CTTATCTT-GAAGGTAGATGGAGTTTTGAGTGGTTTGGAGTC--AACACTCCTGGTTCT- 538
||| | || ||||| ||||||| |||||||||||||||| || | | |||||||| |
Sbjct 408 CTTGT-TTCGAAGGCAGATGGAATTTTGAGTGGTTTGGA-TCTGGA-AGTCCTGGTT-TA 463
Query 539 CTTGCTGTTCGGGTTATGTTCGAGAGGTTCCCTTCGACATTGGTGAGTCTATCCAA-TAT 597
|| |||| ||| ||||| |||||||| || ||||| ||||||| || | ||| ||| ||
Sbjct 464 CTCGCTGCTCGAGTTATATTCGAGAGATTTCCTTCAACATTGGCGAATTTAT-CAAGAAT 522
Query 598 GGAAATATTCATTAAAGATAATAACACAAAGGCAACAGCAAACATCAAACTCCTAAACTC 657
||| ||| | || || ||| |||| ||||||| || ||||| |||||||| | |||||
Sbjct 523 GGAGATACTGATCAAGGATGCTAACGCAAAGGCGACGGCAAATATCAAACTTTTGAACTC 582
Query 658 GATAGAAAACAAAATCACCCTGTCATCGAAATTGACAATAGAAGGG-CCTTTAAGGA-TG 715
|||||||| |||||||| |||||||| |||||||| | | |||| ||||| | || ||
Sbjct 583 GATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTCG-AGGGACCTTTGA-GATTG 640
Query 716 AAAGAAGAGTAT-TTAG-AGGGATTGCTCGAGTCGCCAACGGTTATTGAAGAAGCAGTAC 773
|||||||| ||| || | ||| | ||||||| || ||||| || |||||||||||||| |
Sbjct 641 AAAGAAGAATATGTT-GAAGGTA-TGCTCGAATCCCCAACAGTCATTGAAGAAGCAGTTC 698
Query 774 CTGACCAAC-TAAGAGGTTTATTGGGTCAAGCTACTACCACGTTGCAACAGCTTCCTGAA 832
|||| || | ||| |||| |||||||||||| | || |||||||| ||||||||||
Sbjct 699 CTGAACAGCTTAA-AGGTGCATTGGGTCAAGCCGCCACAACGTTGCAGCAGCTTCCTGCT 757
Query 833 CCTATCAAAGATACTCTAGCCAATGGTCTAAGAATCCCCCTTGGTGG-AACTTACCAAAG 891
| |||||| ||||||||||||| |||||| ||||| ||||| |||| ||| ||||
Sbjct 758 CTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTAAGTGGTTCCTT-TGAAAG 816
Query 892 ATTCTTCATGATATCTTATCTAGACGACGAGATTCTTATTGTAAGAGATACCGCAGGAGT 951
||||||||||||||||||||||||||| ||||||||||| || |||||||| | ||||||
Sbjct 817 ATTCTTCATGATATCTTATCTAGACGAAGAGATTCTTATAGTTAGAGATACTGAAGGAGT 876
Query 952 GCCTGAAGTTCTAACGAGGGTGGAAACA 979
||||||||||||||||||| | ||||||
Sbjct 877 GCCTGAAGTTCTAACGAGGATTGAAACA 904
> Ahg933062 jgi|Araly1|933062|scaffold_401050.1
Length=271
Score = 351 bits (190), Expect = 5e-96
Identities = 237/259 (92%), Gaps = 5/259 (2%)
Strand=Plus/Plus
Query 99 CTTATTCAATGGCATTGATCCAACATGGTTCGGTTTCTGGGACCTCTGCGGTTCGATTGA 158
||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 13 CTTCTTCAATGGCATTGATCCAACATGCTTTGGTTTCTGGGACCTCTGCGGTTCGATTGA 72
Query 159 GCTTCTCATCCTCTGTATCACCACCGTCGTCTTCTCCTCCACTGTCAAGGGTTTCTCTC- 217
|||| |||||||| ||||||||| |||||||||||||||| | ||||||||| ||||||
Sbjct 73 GCTTATCATCCTCCGTATCACCAACGTCGTCTTCTCCTCCGCCGTCAAGGGTCTCTCTCC 132
Query 218 AATTTTCAGTCGGAGAAGAAGAGTTGTTACCGGAGAATGATATGCAGA-GCTATGGTTCA 276
||||| |||||||||||||||||||||| ||||||||||||||||||| | |||||||||
Sbjct 133 AATTT-CAGTCGGAGAAGAAGAGTTGTTGCCGGAGAATGATATGCAGAAG-TATGGTTCA 190
Query 277 AGACTCGGTTCAAGGGATTCCTTCAGTTTACGCCAGAGAAA-TGGAGCGTCTCTCTGCTA 335
|||| | ||||||| |||||||| |||||||||||||||| | ||||||||||||||||
Sbjct 191 AGACGCCGTTCAAGTAATTCCTTCGGTTTACGCCAGAGAAAATAGAGCGTCTCTCTGCTA 250
Query 336 AGGAATCGCTTATTCTCGC 354
||||||| |||||||||||
Sbjct 251 AGGAATCACTTATTCTCGC 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43917600384
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5