BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58020.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898751 jgi|Araly1|898751|Al_scaffold_0005_2717 1086 0.0
> Ahg898751 jgi|Araly1|898751|Al_scaffold_0005_2717
Length=753
Score = 1086 bits (588), Expect = 0.0
Identities = 713/770 (93%), Gaps = 22/770 (3%)
Strand=Plus/Plus
Query 22 ATGATGGCCGCCATAAGAGCAGCGATTCTGAAGCCGCAAGACTATTATTCTCACCTCAAA 81
||||||||||||||||||||||||||||| ||||| |||||||||| |||| || |||||
Sbjct 1 ATGATGGCCGCCATAAGAGCAGCGATTCTCAAGCCACAAGACTATTGTTCTTACATCAAA 60
Query 82 ACAGCTCTTTTCCATTCGACTCCTATCTTACAACGCAAACATCAATCTAATTCAAAAGCT 141
|||||| |||||||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 61 ACAGCTTTTTTCCATTCTACTTCTATCTTACAACGCAAACATCAATCCAATTCAAAAGCT 120
Query 142 CGAAGCAAAAGGTTTGGAAGAAAGAAGGCAAAGCAAGATTTGCGTCGTAATGTGAATGCT 201
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGAAGCAAAAGGTTGGGAAGAAAGAAGGCAAAGCAAGATTTGCGTCGTAATGTGAATGCT 180
Query 202 TTTGCACAACACTTATTTGGGATATGGAGTGATGGGTTTGATTACTCTGGTAAGCACACC 261
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTGCACAACACTTATTCGGGATTTGGAGTGATGGGTTTGATTACTCTGGTAAGCACACC 240
Query 262 TCATGGTTTGAGAAACAGTACTCTAGGGTTTCCAAAAGGAATCGGAATGGTAAAACACAC 321
|| |||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||
Sbjct 241 TCGTGGTTTGAGAAACAATACTCTAGAGTTTCCAAAAGGAATCGGAATGGTAGAAGACAC 300
Query 322 ATCCCTCAACATTTGGATAAAAGATGTTTTGATTTTAGCGAAGTTGATGAGGGATACCAA 381
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 301 ATCCCTCAACATTTGGATAAAAGATGTTTTGATTTTAGCGAAGTTGATGATGGATATGAA 360
Query 382 ATTGAGTACTTTTTAAAGACTGCGTTGGGTGGATCCCGAGGTTTCTCTTGGTCAAACACT 441
|||||| ||||||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 361 ATTGAGCACTTTTTGCGGACTGCATTGGGTGGATCCCGACGTTTCTCTTGGTCAAACACT 420
Query 442 CGTG-AG-GGGGG-AACTCGCTCAGGGAGGTACTCTAACAACTTTAGAAAATCTTGGGGT 498
| || || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 CATGGAGAGGGGGGAACTCGCTCAGGGAGGTACTCTAGCAACTTTAGAAAATCTTGGGGT 480
Query 499 TCAAGATATCGCTTAGATgaagaagaagaagaagaagaagaagaaTACGAGTATTCTTCA 558
|| |||||||| |||||||||||||||||||| || |||||||||||
Sbjct 481 TCGAGATATCGATTAGATGAAGAAGAAGAAGA-------------TA--AGTATTCTTCA 525
Query 559 ACAGGAGT-GAGCGACACAGAACCAAATCAGGAGTCTCATAGACA-GACACTTGGTTTAA 616
|||| | | |||||||||||||||||| ||||||||||||||||| | |||||||||| |
Sbjct 526 ACAGAA-TCGAGCGACACAGAACCAAACCAGGAGTCTCATAGACAAG-CACTTGGTTTGA 583
Query 617 GTTCATCAGGTCCCTTAAACCTTGAAGATGTCAAAATTGCATACCGAGCTTGTGCATTAA 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 GTTCATCAGGTCCCTTAAACCTTGAAGATGTCAAAATTGCATACCGAGCTTGTGCATTAA 643
Query 677 AATGGCATCCAGATCGTCACCACACCTCTACCAAGAATGAAGCTGAGGAAAAATTCAAGC 736
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 644 AATGGCATCCAGATCGTCACCACGCCTCTACCAAGAATGAAGCTGAGGAAAAGTTCAAGC 703
Query 737 TCTGCACTGTGGCATATCAATCTTTATGCGAAAAGCTAGCCATGAACTAA 786
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 TCTGCACTGTGGCATATCAATCTTTATGCGAAAAGCTAGCCATGAACTAA 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5