BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58030.1
Length=2172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486254 jgi|Araly1|486254|fgenesh2_kg.5__2246__AT3G58030.2 2767 0.0
> Ahg486254 jgi|Araly1|486254|fgenesh2_kg.5__2246__AT3G58030.2
Length=1924
Score = 2767 bits (1498), Expect = 0.0
Identities = 1720/1824 (94%), Gaps = 28/1824 (2%)
Strand=Plus/Plus
Query 338 GGATTTGAGAATTAGGGTTTTCTGATTGGGGGTTTTCTTATTGATG-TTACCTTCACCAA 396
|||||||||||||||||||||| |||||||||||||||| |||||| ||||||| |||
Sbjct 114 GGATTTGAGAATTAGGGTTTTCCGATTGGGGGTTTTCTTGTTGATGTTTACCTT--TCAA 171
Query 397 ATTGTTGTCGGAGATCTAGATTTGGTTCAGTTATGGAATAATGGCTC--GTC-TCTTGCC 453
||| || ||||||||||||| | | | ||||||||||||||| || |||||||
Sbjct 172 ATTTTTTTCGGAGATCTAGA----G-T-A---ATGGAATAATGGCTCATCTCTTCTTGCC 222
Query 454 ATCTCTATTCGTAATTAGCATCTTCTTCTTCATCCAAAGACTCCTCCTTTCTTCGTTAAT 513
||||||||| |||||||||||| |||| ||| ||||||||| ||| |||||||||||||
Sbjct 223 ATCTCTATTTGTAATTAGCATCATCTTGTTCGTCCAAAGACGACTCTTTTCTTCGTTAAT 282
Query 514 CCATCGCCAGCTATTGAATCTGAAGCAAATCTGAGAATCTACCGAACTCACGCACCTGTA 573
||||||||| ||||||||||||||||||||||||||||||||| ||||| | | ||||||
Sbjct 283 CCATCGCCATCTATTGAATCTGAAGCAAATCTGAGAATCTACCAAACTCCCACGCCTGTA 342
Query 574 TATTGCTTACACGATACAGAGCACACGGAGACGGAGTACATATTGTTCAGCGCAAGTGAA 633
| |||||| |||| || | | | | |||||||||||||||||||||||| ||||||||||
Sbjct 343 TTTTGCTTCCACGGTATATATCTCTCGGAGACGGAGTACATATTGTTCACCGCAAGTGAA 402
Query 634 AGCAAGAGCCTTTTTGTCTATTGATGGGTGAGGAGTTAGCTGACACAATGAACCTGGATT 693
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 AGCAAGAGCCTTTTTGTTTATTGATGGGTGAGGAGTTAGCTGACACAATGAACCTGGATT 462
Query 694 TGAATCTTGGGCCTGGTCCTGAGTCTGATCTCCAACCTGCACCAAACGAGACTGTGAATT 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 TGAATCTTGGGCCTGGTCCTGAGTCTGATCTCCAACCTGCACCAAACGAGACTGTGAATT 522
Query 754 TGGCTGATTGGACTAATGACCCGCCTGAGAGATCTTCTGAAGCTGTGACAAGGATCAGGA 813
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 523 TGGCCGATTGGACTAATGACCCGCCTGAGAGATCTTCTGAAGCTGTGACGAGGATCAGGA 582
Query 814 CTCGGCATAGGACACGGTTCAGACAGCTTAATCTCCCGATCCCGGTTCTATCTGAAACCC 873
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 CTCGGCATAGGACACGCTTCAGACAGCTTAATCTCCCGATCCCGGTTCTATCTGAAACCC 642
Query 874 ATACCATGGCTATAGAGCTCAACCAGTTGATGGGAAATTCTGTAAATAGAGCTGCTATGC 933
|||||||||||||||| || |||||||||||||||| |||||| ||| ||||||||||||
Sbjct 643 ATACCATGGCTATAGAACTGAACCAGTTGATGGGAAGTTCTGTCAATGGAGCTGCTATGC 702
Query 934 AGACTGGTGAGGGTAGTGAAAGAGGCAATGAGGATTTGAAAATGTGTGAGAATGGCGATG 993
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 703 AGACTGGTGAGGGTAGTGAAAGAGGCAATGAGGATCTGAAAATGTGTGAGAACGGCGACG 762
Query 994 GAGCCCTTGGGGACGGTGTATTGGATAAGAAAGCGGATGTCGAGAAAAGCAGTGGCAGCG 1053
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 763 GAGCCCTTGGGGACGGTGTATCGGATAAGAAAGCGGATGTCGAGAAAAGCAGTGGCAGCG 822
Query 1054 ACGGTAACTTTTTCGATTGTAATATATGTTTGGATTTGTCGAAGGAGCCGGTTCTCACCT 1113
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 823 ACGGTAACTTTTTCGATTGTAATATATGTTTGGATTTGTCCAAGGAGCCGGTTCTCACCT 882
Query 1114 GTTGTGGTCATCTTTACTGTTGGCCTTGTCTGTACCAATGGTTACAAATTTCGGATGCAA 1173
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GTTGTGGCCATCTTTACTGTTGGCCTTGTCTGTACCAATGGTTACAAATTTCGGATGCAA 942
Query 1174 AGGAATGTCCTGTTTGTAAAGGAGAGGTGACCTCCAAAACCGTGACACCGATCTATGGAC 1233
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 943 AGGAATGTCCGGTTTGCAAAGGAGAGGTGACCTCCAAAACCGTGACACCGATCTATGGGC 1002
Query 1234 GTGGAAACCACAAGAGAGAAATTGAAGAGAGTTTAGATACTAAGGTCCCCATGAGACCAC 1293
|||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1003 GTGGGAACCACAAAAGAGAAATTGAAGAGAGTTTAGATACTAAGATCCCCATGAGACCAC 1062
Query 1294 ACGCGAGACGCATTGAGAGCTTGAGGAATACAATTCAAAGGTCGCCTTTTACAATACCAA 1353
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1063 ATGCGAGACGCATTGAGAGCTTGAGGAATACAATTCAAAGGTCGCCTTTTACAATACCGA 1122
Query 1354 TGGAAGAAATGATTAGACGTATACAGAATAGGTTTGACAGGGATTCAACCCCAGTCCCTG 1413
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1123 TGGAAGAAATGATTAGACGTATACAGAATAGGTTTGACAGGGATTCAACCCCGGTCCCTG 1182
Query 1414 ATTTTAGTAACCGAGAGGCATCAGAAAGAGTCAACGATCGAGCCAATTCGATCCTTAACC 1473
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1183 ATTTTAGTAACCGCGAGGCATCGGAGAGAGTCAACGATCGAGCCAATTCGATCCTTAACC 1242
Query 1474 GGTTGATGACATCTAGGGGAGTTAGATCAGAGCAGAACCAGGCTAGTGCTGCAGCAGCAG 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 GGTTGATGACATCTAGGGGAGTTAGATCAGAGCAGAACCAGGCTAGTGCTGCAGCAGCAG 1302
Query 1534 CCATTGTCGCAGCATCAGAGGATATTGATCTAAATCCAAACATTGCTCCTGATCTTGAAG 1593
|||||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct 1303 CCATTGTCGCAGCAACAGAGGATATCGATCTGAATCCAAACATTTCTCCTGATCTTGAAG 1362
Query 1594 GAGAAAGCAACACGAGATTCCATCCTCTCTTGATCAGGAGACAGTTACAGTCGCACCGAG 1653
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1363 GAGAAACCAACACGAGATTCCATCCTCTGTTGATCAGGAGACAGTTACAGTCGCACCGAG 1422
Query 1654 TTGCAAGGATCTCGACTTTCACTTCTGCGTTGAGTTCAGCTGAGAGGCTTGTGGATGCGT 1713
||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||||
Sbjct 1423 TTGCAAGGATCTCGACTTTCACTTCAGCGTTGAGTTCTGCTGAGCGGCTTGTAGATGCGT 1482
Query 1714 ATTTTAGGACTCATCCGTTGGGGAGGAACCACCAAGAGCAAAACCATCATGCTCCTGTTG 1773
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 ATTTTAGGACTCATCCATTGGGGAGGAACCACCAAGAGCAAAACCATCATGCTCCTGTTA 1542
Query 1774 TGGTTGATGATAGAGACTCATTCTCAAGCATTGCAGCTGTTATAAACTCTGAGAGTCAAG 1833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 TGGTTGATGATAGAGACTCATTCTCAAGCATTGCAGCTGTTATAAACTCTGAGAGTCAAG 1602
Query 1834 TGGATACTGCAGTTGAGATCGATTCTATGG-C--TCTTTCGACATCGTCCTCGAGGAGAA 1890
|||| |||||||||||||| |||||||||| | ||||||||||||||| ||||||||||
Sbjct 1603 TGGACACTGCAGTTGAGATTGATTCTATGGTCACTCTTTCGACATCGTCTTCGAGGAGAA 1662
Query 1891 GGAATGAGAATGGTTCGAGGGTTTCTGATGTAGACAGTGCAGATTCTCGTCCGCCTAGGA 1950
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1663 GGAATGAGAATGGTTCGAGGGTGTCTGATGTAGACAGTGCAGATTCTCGTCCGCCTAGGA 1722
Query 1951 GAAGGAGATTTACTTGAGAAACATAAATAAGA-AAAGCTTTCAACCTGGAAGCTGACGAT 2009
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1723 GAAGGAGATTTACTTGAGAAACATAAATAAAAGAAAGCTTTCAACCTGGAAGCTGACGAT 1782
Query 2010 GATGATGATTAAGAAGAAGATAAGAAGAAGattgtgtaactttatttttcttgtgttgct 2069
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1783 GATGATGATTAAGAAGAAGAGAAGAAGAAGATTGTGTAACTTTATTTTTCCTGTGTTGCT 1842
Query 2070 t-t-g-tt-gt---aatttgtttttgtatttttctcgatagggatggttttttttaatcg 2122
| | | || || |||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 1843 TGTTGGTTTGTTGTAATTTGTTTT-GTATTTTTCTCAATAGGGATGGTTTTTTT-AATCG 1900
Query 2123 aaaattttctttcatctttttttt 2146
||| |||||||| |||||||||||
Sbjct 1901 AAATTTTTCTTTTATCTTTTTTTT 1924
Score = 124 bits (67), Expect = 2e-27
Identities = 71/73 (97%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 13 ATTTTTCCATGGCGTTGTCGGAGTTTCAGCTAGCTCTGAGCTTGGTGGTCTTGTTCTTCT 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1 ATTTTTCCATGGCGTTGTCGGAGTTTCAGCTAGCTCTGAGCTTGGTGGTCTTGTTGTTTT 60
Query 73 AGCTGATTTGATC 85
|||||||||||||
Sbjct 61 AGCTGATTTGATC 73
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81741665770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5