BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58040.1
Length=1601
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938787 jgi|Araly1|938787|scaffold_502978.1 1615 0.0
Ahg935056 jgi|Araly1|935056|scaffold_403044.1 972 0.0
> Ahg938787 jgi|Araly1|938787|scaffold_502978.1
Length=973
Score = 1615 bits (874), Expect = 0.0
Identities = 941/973 (97%), Gaps = 5/973 (1%)
Strand=Plus/Plus
Query 249 TGAATTAGGGATTTGGGCTCGTCATGGCTCCTGGAGGCAGTGCTTTGAAAGAAGTCATGG 308
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1 TGAATTAGGGATTTGGGCTCACCATGGCTCCTGGAGGTAGTGCTTTGAAAGAAGTCATGG 60
Query 309 AATCTAATTCAACGGGAATGGATTACGAGGTTAAAACGGCAAAAGTGGAAG-T--TAATA 365
||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 61 AATCTAATTCAACGGGAATGGATTATGAGGTTAAAACGGCAAAAGTGGAAGTTAATAATA 120
Query 366 ATAACAAACCTACAAAGCCAGGGAGTGCAGGGATTGGAAAATATGGGATCCATTCGAACA 425
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATAACAAACCTACAAAACCAGGGAGTGCAGGGATTGGAAAATATGGGATCCATTCGAACA 180
Query 426 ATGGTGTTTACGAGCTTCTTGAATGTCCCGTCTGTACAAATTTAATGTACCCTCCAATTC 485
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 ATGGTGTTTATGAGCTTCTTGAATGTCCCGTTTGTACAAATTTAATGTACCCTCCAATTC 240
Query 486 ATCAGTGTCCGAATGGCCACACATTATGTTCAAACTGCAAACTGAGAGTGCAGAACACAT 545
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 ATCAGTGTCCAAATGGCCACACATTATGTTCAAACTGCAAAGTGAGAGTGCAGAACACAT 300
Query 546 GCCCTACATGTCGCTACGAGCTTGGTAACATAAGATGCTTAGCTCTTGAGAAAGTTGCAG 605
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 GCCCTACATGTCGCTATGAGCTTGGTAATATAAGATGCTTAGCTCTTGAGAAAGTTGCAG 360
Query 606 AGTCTTTGGAAGTTCCATGCCGGTACCAAAATTTGGGGTGTCATGACATTTTCCCTTACT 665
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 AGTCTTTGGAAGTTCCATGCCGGTACCAAAATTTGGGGTGTCATGACATTTTTCCTTACT 420
Query 666 ACAGCAAGCTTAAGCACGAGCAGCATTGCAGGTTTAGGCCTTACACTTGCCCTTATGCTG 725
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 ACAGCAAGCTTAAGCACGAGCAGCATTGCAGGTTTAGGCCTTACACTTGTCCTTATGCTG 480
Query 726 GTTCTGAGTGTTCGGTTACAGGTGATATCCCTACACTTGTCGTTCATCTCAAAGATGATC 785
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 481 GTTCTGAGTGCTCGGTTACAGGTGATATCCCCACACTTGTTGTTCATCTCAAAGATGATC 540
Query 786 ATAAAGTCGATATGCATGACGGATGCACCTTCAACCACCGTTATGTAAAGTCAAATCCAC 845
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 541 ATAAAGTCGATATGCATGACGGATGCACCTTCAACCACCGATATGTAAAGTCAAATCCAC 600
Query 846 ATGAGGTCGAAAATGCTACATGGATGCTTACGGTGTTCAACTGTTTTGGGAGACAGTTCT 905
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGAAGTCGAAAATGCTACATGGATGCTTACGGTGTTCAACTGTTTTGGGAGACAGTTCT 660
Query 906 GTTTACACTTCGAGGCGTTCCAGCTGGGAATGGCTCCAGTGTACATGGCATTCCTTCGTT 965
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTTTACACTTTGAGGCGTTCCAGCTGGGAATGGCTCCAGTGTACATGGCATTCCTTCGTT 720
Query 966 TTATGGGAGATGAGAACGAGGCGAAGAAGTTCAGTTACAGCTTGGAAGTAGGAGCTCATG 1025
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 721 TCATGGGAGATGAGAACGAGGCAAAGAAGTTCAGTTACAGCTTGGAAGTAGGAGCTCATG 780
Query 1026 GACGGAAATTAACATGGCAAGGGATCCCTAGAAGCATCCGTGACAGTCACAGGAAAGTCC 1085
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GACGTAAATTAACATGGCAAGGGATCCCTAGAAGCATCCGTGACAGTCACAGGAAAGTCC 840
Query 1086 GGGACAGTCAAGACGGACTCATCATCCCAAGGAACCTCGCACTCTACTTCTCTGGAGGTG 1145
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 GGGACAGTCAAGACGGACTCATCATCCCAAGAAACCTCGCACTCTACTTCTCTGGAGGTG 900
Query 1146 ATAGGCAAGAACTCAAGTTGAGAGTGACTGGACGAATCTGgaaagaggagtaaacgaaaa 1205
|||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 901 ATAGGCAAGAACTCAAGTTGAGAGTGACCGGGCGAATCTGGAAAGAGGAGTAAACCAAAA 960
Query 1206 acgaa-aaacgaa 1217
|||| ||| |||
Sbjct 961 -CGAAGAAAAGAA 972
> Ahg935056 jgi|Araly1|935056|scaffold_403044.1
Length=961
Score = 972 bits (526), Expect = 0.0
Identities = 812/948 (86%), Gaps = 27/948 (3%)
Strand=Plus/Plus
Query 260 TTTGGGCTCGT-CATGGCTCCTGGAGGCAGTGCTTTGAAAG-AAGTCATGGAATCTAATT 317
||||| ||| | |||||||||||| |||||||| ||||||| || | | |||||||| |
Sbjct 12 TTTGGACTC-TCCATGGCTCCTGGTGGCAGTGCGTTGAAAGAAACT-TTAGAATCTAACT 69
Query 318 CAACGGGAATGGATTACGAGGTTAAAACGGCAAAAGTGGAAGTTAATAATAACAAACCTA 377
| || || | ||||| |||||||| | | |||| || | || | ||||| |||||| |
Sbjct 70 CGACAGGCTTAGATTATGAGGTTAAGATGTCAAAGGTTG-AG--ACTAATAGCAAACCAA 126
Query 378 CAAAGCCAGGGAGT-GCAGGGATTGGAAAATATGGGATCCATTCGAACAATGGTGTTTAC 436
||||| |||| ||| || ||||| ||| || ||||||||| ||||||||||||
Sbjct 127 CAAAGTCAGGTAGTGGC-TCCATTGG-AAA-AT----TCCATTCGAGCAATGGTGTTTAT 179
Query 437 GAGCTTCTTGAATGTCCCGTCTGTACAAATTTAATGTACCCTCCAATTCATCAGTGTCCG 496
||||| || ||||||| || ||||||||| ||||||| ||||||||||||||||| |||
Sbjct 180 GAGCTCCTCGAATGTCTGGTTTGTACAAATCTAATGTATCCTCCAATTCATCAGTGCCCG 239
Query 497 AATGGCCACACATTATGTTCAAACTGCAAACTGAGAGTGCAGAACACATGCCCTACATGT 556
|| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 AACGGCCACACATTGTGTTCAAGCTGCAAACTGAGAGTGCAGAACACATGCCCTACATGC 299
Query 557 CGCTACGAGCTTGGTAACATAAGATGCTTAGCTCTTGAGAAAGTTGCAGAGTCTTTGGAA 616
||||| ||||||||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct 300 CGCTATGAGCTTGGTAACATAAGATGCTTGGCTCTTGAGAAGGTTGCAGAATCATTGGAA 359
Query 617 GTTCCATGCCGGTACCAAAATTTGGGGTGTCATGACATTTTCCCTTACTACAGCAAGCTT 676
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 360 GTTCCATGCCGGTACCAAAATTTAGGGTGTCATGACATTTTCCCATACTACAGCAAGCTC 419
Query 677 AAGCACGAGCAGCATTGCAGGTTTAGG-CCTTACA-CTTGCCCTTATGCTGGTTCTGAGT 734
|||||||||||||||||||||||| | ||| ||| || | |||||||||||||||||||
Sbjct 420 AAGCACGAGCAGCATTGCAGGTTTCGATCCT-ACAACT-GTCCTTATGCTGGTTCTGAGT 477
Query 735 GTTCGGTTACAGGTGATATCCCTACACTTGTCGTTCATCTCAAAGATGATCATAAAGTCG 794
|||| || || |||||||| || || ||||| | ||||||||||||||||||||||| |
Sbjct 478 GTTCAGTGACGGGTGATATTCCAACGCTTGTTGACCATCTCAAAGATGATCATAAAGTTG 537
Query 795 ATATGCATGACGGATGCACCTTCAACCACCGTTATGTAAAGTCAAATCCACATGAGGTCG 854
|||||||||| || ||||| |||||||| |||||||| ||||||||||| || |||||||
Sbjct 538 ATATGCATGATGGGTGCACTTTCAACCATCGTTATGTGAAGTCAAATCCGCACGAGGTCG 597
Query 855 AAAATGCTACATGGATGCTTACGGTGTTCAACTGTTTTGGGAGACAGTTCTGTTTACACT 914
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 598 AAAATGCTACATGGATGCTTACGGTCTTCAACTGTTTTGGAAGACAGTTCTGCTTACACT 657
Query 915 TCGAGGCGTTCCAGCT-GGGAATGGCTCCAGTGTACATGGCATTCCTTCGTTTTATGGGA 973
| |||||||| ||||| |||| |||| |||||||||||||| || || || || ||||||
Sbjct 658 TTGAGGCGTTTCAGCTCGGGA-TGGCACCAGTGTACATGGCGTTTCTACGGTTCATGGGA 716
Query 974 GATGAGAACGAGGCGAAGAAGTTCAGTTACAGCTTGGAAGTAGGAGCTCATGGACGGAAA 1033
|| ||||||||||| |||||||||||||||||||||||||| |||||||| | || |||
Sbjct 717 GACGAGAACGAGGCTAAGAAGTTCAGTTACAGCTTGGAAGTTGGAGCTCACAGCCGCAAA 776
Query 1034 TTAACATGGCAAGGGAT-CCCTAGAAGCATCCGTGACAGTCACAGGAAAGTCCGGGACAG 1092
| |||||||||||||| ||| ||||||||| | |||||||||||||||||||| || ||
Sbjct 777 CTGACATGGCAAGGGATTCCC-AGAAGCATCAGAGACAGTCACAGGAAAGTCCGAGATAG 835
Query 1093 TCAAGACGGACTCATCATCCCAAGGAACCTCGCACTCTACTTCTCTGG-AGGTGATAG-G 1150
||||||||| ||||||||||| || ||| | || | ||||||||||| || ||| | |
Sbjct 836 TCAAGACGGCCTCATCATCCCTAGAAACTTGGCTTTGTACTTCTCTGGCAG-TGACAAAG 894
Query 1151 CAAGAACTCAAGTTGAGAGTGACTGGACGAATCTGgaaagaggagtaa 1198
|||| ||||||||| |||| |||||||| || |||||||| || |||
Sbjct 895 -AAGAGCTCAAGTTGCGAGTCACTGGACGGATTTGGAAAGAAGAATAA 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59992135875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5