BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G58040.1 Length=1601 Score E Sequences producing significant alignments: (Bits) Value Ahg938787 jgi|Araly1|938787|scaffold_502978.1 1615 0.0 Ahg935056 jgi|Araly1|935056|scaffold_403044.1 972 0.0 > Ahg938787 jgi|Araly1|938787|scaffold_502978.1 Length=973 Score = 1615 bits (874), Expect = 0.0 Identities = 941/973 (97%), Gaps = 5/973 (1%) Strand=Plus/Plus Query 249 TGAATTAGGGATTTGGGCTCGTCATGGCTCCTGGAGGCAGTGCTTTGAAAGAAGTCATGG 308 |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 1 TGAATTAGGGATTTGGGCTCACCATGGCTCCTGGAGGTAGTGCTTTGAAAGAAGTCATGG 60 Query 309 AATCTAATTCAACGGGAATGGATTACGAGGTTAAAACGGCAAAAGTGGAAG-T--TAATA 365 ||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| Sbjct 61 AATCTAATTCAACGGGAATGGATTATGAGGTTAAAACGGCAAAAGTGGAAGTTAATAATA 120 Query 366 ATAACAAACCTACAAAGCCAGGGAGTGCAGGGATTGGAAAATATGGGATCCATTCGAACA 425 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATAACAAACCTACAAAACCAGGGAGTGCAGGGATTGGAAAATATGGGATCCATTCGAACA 180 Query 426 ATGGTGTTTACGAGCTTCTTGAATGTCCCGTCTGTACAAATTTAATGTACCCTCCAATTC 485 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 181 ATGGTGTTTATGAGCTTCTTGAATGTCCCGTTTGTACAAATTTAATGTACCCTCCAATTC 240 Query 486 ATCAGTGTCCGAATGGCCACACATTATGTTCAAACTGCAAACTGAGAGTGCAGAACACAT 545 |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 241 ATCAGTGTCCAAATGGCCACACATTATGTTCAAACTGCAAAGTGAGAGTGCAGAACACAT 300 Query 546 GCCCTACATGTCGCTACGAGCTTGGTAACATAAGATGCTTAGCTCTTGAGAAAGTTGCAG 605 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 301 GCCCTACATGTCGCTATGAGCTTGGTAATATAAGATGCTTAGCTCTTGAGAAAGTTGCAG 360 Query 606 AGTCTTTGGAAGTTCCATGCCGGTACCAAAATTTGGGGTGTCATGACATTTTCCCTTACT 665 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 361 AGTCTTTGGAAGTTCCATGCCGGTACCAAAATTTGGGGTGTCATGACATTTTTCCTTACT 420 Query 666 ACAGCAAGCTTAAGCACGAGCAGCATTGCAGGTTTAGGCCTTACACTTGCCCTTATGCTG 725 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 421 ACAGCAAGCTTAAGCACGAGCAGCATTGCAGGTTTAGGCCTTACACTTGTCCTTATGCTG 480 Query 726 GTTCTGAGTGTTCGGTTACAGGTGATATCCCTACACTTGTCGTTCATCTCAAAGATGATC 785 |||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 481 GTTCTGAGTGCTCGGTTACAGGTGATATCCCCACACTTGTTGTTCATCTCAAAGATGATC 540 Query 786 ATAAAGTCGATATGCATGACGGATGCACCTTCAACCACCGTTATGTAAAGTCAAATCCAC 845 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 541 ATAAAGTCGATATGCATGACGGATGCACCTTCAACCACCGATATGTAAAGTCAAATCCAC 600 Query 846 ATGAGGTCGAAAATGCTACATGGATGCTTACGGTGTTCAACTGTTTTGGGAGACAGTTCT 905 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 ATGAAGTCGAAAATGCTACATGGATGCTTACGGTGTTCAACTGTTTTGGGAGACAGTTCT 660 Query 906 GTTTACACTTCGAGGCGTTCCAGCTGGGAATGGCTCCAGTGTACATGGCATTCCTTCGTT 965 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GTTTACACTTTGAGGCGTTCCAGCTGGGAATGGCTCCAGTGTACATGGCATTCCTTCGTT 720 Query 966 TTATGGGAGATGAGAACGAGGCGAAGAAGTTCAGTTACAGCTTGGAAGTAGGAGCTCATG 1025 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 721 TCATGGGAGATGAGAACGAGGCAAAGAAGTTCAGTTACAGCTTGGAAGTAGGAGCTCATG 780 Query 1026 GACGGAAATTAACATGGCAAGGGATCCCTAGAAGCATCCGTGACAGTCACAGGAAAGTCC 1085 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GACGTAAATTAACATGGCAAGGGATCCCTAGAAGCATCCGTGACAGTCACAGGAAAGTCC 840 Query 1086 GGGACAGTCAAGACGGACTCATCATCCCAAGGAACCTCGCACTCTACTTCTCTGGAGGTG 1145 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 841 GGGACAGTCAAGACGGACTCATCATCCCAAGAAACCTCGCACTCTACTTCTCTGGAGGTG 900 Query 1146 ATAGGCAAGAACTCAAGTTGAGAGTGACTGGACGAATCTGgaaagaggagtaaacgaaaa 1205 |||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||| Sbjct 901 ATAGGCAAGAACTCAAGTTGAGAGTGACCGGGCGAATCTGGAAAGAGGAGTAAACCAAAA 960 Query 1206 acgaa-aaacgaa 1217 |||| ||| ||| Sbjct 961 -CGAAGAAAAGAA 972 > Ahg935056 jgi|Araly1|935056|scaffold_403044.1 Length=961 Score = 972 bits (526), Expect = 0.0 Identities = 812/948 (86%), Gaps = 27/948 (3%) Strand=Plus/Plus Query 260 TTTGGGCTCGT-CATGGCTCCTGGAGGCAGTGCTTTGAAAG-AAGTCATGGAATCTAATT 317 ||||| ||| | |||||||||||| |||||||| ||||||| || | | |||||||| | Sbjct 12 TTTGGACTC-TCCATGGCTCCTGGTGGCAGTGCGTTGAAAGAAACT-TTAGAATCTAACT 69 Query 318 CAACGGGAATGGATTACGAGGTTAAAACGGCAAAAGTGGAAGTTAATAATAACAAACCTA 377 | || || | ||||| |||||||| | | |||| || | || | ||||| |||||| | Sbjct 70 CGACAGGCTTAGATTATGAGGTTAAGATGTCAAAGGTTG-AG--ACTAATAGCAAACCAA 126 Query 378 CAAAGCCAGGGAGT-GCAGGGATTGGAAAATATGGGATCCATTCGAACAATGGTGTTTAC 436 ||||| |||| ||| || ||||| ||| || ||||||||| |||||||||||| Sbjct 127 CAAAGTCAGGTAGTGGC-TCCATTGG-AAA-AT----TCCATTCGAGCAATGGTGTTTAT 179 Query 437 GAGCTTCTTGAATGTCCCGTCTGTACAAATTTAATGTACCCTCCAATTCATCAGTGTCCG 496 ||||| || ||||||| || ||||||||| ||||||| ||||||||||||||||| ||| Sbjct 180 GAGCTCCTCGAATGTCTGGTTTGTACAAATCTAATGTATCCTCCAATTCATCAGTGCCCG 239 Query 497 AATGGCCACACATTATGTTCAAACTGCAAACTGAGAGTGCAGAACACATGCCCTACATGT 556 || ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 240 AACGGCCACACATTGTGTTCAAGCTGCAAACTGAGAGTGCAGAACACATGCCCTACATGC 299 Query 557 CGCTACGAGCTTGGTAACATAAGATGCTTAGCTCTTGAGAAAGTTGCAGAGTCTTTGGAA 616 ||||| ||||||||||||||||||||||| ||||||||||| |||||||| || |||||| Sbjct 300 CGCTATGAGCTTGGTAACATAAGATGCTTGGCTCTTGAGAAGGTTGCAGAATCATTGGAA 359 Query 617 GTTCCATGCCGGTACCAAAATTTGGGGTGTCATGACATTTTCCCTTACTACAGCAAGCTT 676 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 360 GTTCCATGCCGGTACCAAAATTTAGGGTGTCATGACATTTTCCCATACTACAGCAAGCTC 419 Query 677 AAGCACGAGCAGCATTGCAGGTTTAGG-CCTTACA-CTTGCCCTTATGCTGGTTCTGAGT 734 |||||||||||||||||||||||| | ||| ||| || | ||||||||||||||||||| Sbjct 420 AAGCACGAGCAGCATTGCAGGTTTCGATCCT-ACAACT-GTCCTTATGCTGGTTCTGAGT 477 Query 735 GTTCGGTTACAGGTGATATCCCTACACTTGTCGTTCATCTCAAAGATGATCATAAAGTCG 794 |||| || || |||||||| || || ||||| | ||||||||||||||||||||||| | Sbjct 478 GTTCAGTGACGGGTGATATTCCAACGCTTGTTGACCATCTCAAAGATGATCATAAAGTTG 537 Query 795 ATATGCATGACGGATGCACCTTCAACCACCGTTATGTAAAGTCAAATCCACATGAGGTCG 854 |||||||||| || ||||| |||||||| |||||||| ||||||||||| || ||||||| Sbjct 538 ATATGCATGATGGGTGCACTTTCAACCATCGTTATGTGAAGTCAAATCCGCACGAGGTCG 597 Query 855 AAAATGCTACATGGATGCTTACGGTGTTCAACTGTTTTGGGAGACAGTTCTGTTTACACT 914 ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| Sbjct 598 AAAATGCTACATGGATGCTTACGGTCTTCAACTGTTTTGGAAGACAGTTCTGCTTACACT 657 Query 915 TCGAGGCGTTCCAGCT-GGGAATGGCTCCAGTGTACATGGCATTCCTTCGTTTTATGGGA 973 | |||||||| ||||| |||| |||| |||||||||||||| || || || || |||||| Sbjct 658 TTGAGGCGTTTCAGCTCGGGA-TGGCACCAGTGTACATGGCGTTTCTACGGTTCATGGGA 716 Query 974 GATGAGAACGAGGCGAAGAAGTTCAGTTACAGCTTGGAAGTAGGAGCTCATGGACGGAAA 1033 || ||||||||||| |||||||||||||||||||||||||| |||||||| | || ||| Sbjct 717 GACGAGAACGAGGCTAAGAAGTTCAGTTACAGCTTGGAAGTTGGAGCTCACAGCCGCAAA 776 Query 1034 TTAACATGGCAAGGGAT-CCCTAGAAGCATCCGTGACAGTCACAGGAAAGTCCGGGACAG 1092 | |||||||||||||| ||| ||||||||| | |||||||||||||||||||| || || Sbjct 777 CTGACATGGCAAGGGATTCCC-AGAAGCATCAGAGACAGTCACAGGAAAGTCCGAGATAG 835 Query 1093 TCAAGACGGACTCATCATCCCAAGGAACCTCGCACTCTACTTCTCTGG-AGGTGATAG-G 1150 ||||||||| ||||||||||| || ||| | || | ||||||||||| || ||| | | Sbjct 836 TCAAGACGGCCTCATCATCCCTAGAAACTTGGCTTTGTACTTCTCTGGCAG-TGACAAAG 894 Query 1151 CAAGAACTCAAGTTGAGAGTGACTGGACGAATCTGgaaagaggagtaa 1198 |||| ||||||||| |||| |||||||| || |||||||| || ||| Sbjct 895 -AAGAGCTCAAGTTGCGAGTCACTGGACGGATTTGGAAAGAAGAATAA 941 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59992135875 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5