BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58060.1
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898756 jgi|Araly1|898756|Al_scaffold_0005_2722 1967 0.0
Ahg909597 jgi|Araly1|909597|Al_scaffold_0002_2678 1160 0.0
> Ahg898756 jgi|Araly1|898756|Al_scaffold_0005_2722
Length=1236
Score = 1967 bits (1065), Expect = 0.0
Identities = 1179/1236 (95%), Gaps = 0/1236 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGTCAATTATTGTCCGGAAACACCGTTGCTTTCGTCAAACGATCATGAGGCTATT 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1 ATGGAAGTCAATTATTGTCCGGAAACACCGTTGCTTTCGGCAAACGATCATGAGGCTGGT 60
Query 61 GATCACAAACCAAAGTTAACCGGTATGGTTTCTTCTATGAAATCGAATTTCTTCGCGGAT 120
||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 61 GATCACAAACCGAAGTTAACCGGTATGGTTTCTTCAATGAAATCGAATTTCTTCACGGAT 120
Query 121 TTGCCTCAAAAACTTCGATCAAAAATCGATCCCGAGAACCCTTTGCACCTTGATGTCTCC 180
|||||||| ||||||||||| || |||||||| ||||||||||| ||||||||||||| |
Sbjct 121 TTGCCTCACAAACTTCGATCCAATATCGATCCGGAGAACCCTTTTCACCTTGATGTCTTC 180
Query 181 AAAGCTGCAGGCCTCAAAGAAGATGAAAAGGAGTACTACGAAAGACAATTGGCAACACTA 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAGCTGCAGGCCTCAAAGGAGATGAAAAGGAGTACTACGAAAGACAATTGGCAACACTA 240
Query 241 AAATCCTTTGAAGAAGTAGAAAGTTTCTTAGCTCGATCAGATGAGTATACCATCGATGAA 300
||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 AAAACCTTTGAGGAAGTAGAAAGTTTCTTAGTTCGATCAGATGAGTATACCATCGATGAA 300
Query 301 AAAGAAGAAGAAGAAGATCGAGCTGAGAGAGCTGCACAAGAGCTTGCCATGCAAATCTCA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAGAAGAAGAAGAAGATCGAGCTGAGAGAGCTGCACAAGAGCTTGCCATGCAAATCTCC 360
Query 361 AATTGGGCTAACATCTTTTTACTTGCTCTCAAGATATATGCTACGGTAAAGAGTGGATCC 420
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 AATTGGGCAAACATCTTTTTACTTGCTCTCAAGATATATGCTACTGTAAAGAGTGGATCC 420
Query 421 ATTGCGATTGCAGCATCTACACTCGACTCATTGCTTGACCTTATGGCGGGAGGAATACTT 480
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 ATAGCGATTGCAGCATCGACACTCGACTCTTTGCTTGACCTTATGGCGGGAGGAATACTT 480
Query 481 TGGTTCACACATTTGTCTATGAAGAACGTAAATATCTACAAATATCCTATAGGAAAGCTT 540
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 TGGTTCACACATTTGTCAATGAAGAACGTAAATATCTACAAGTATCCTATAGGAAAGCTT 540
Query 541 AGGGTGCAACCTGTTGGAATCATCATTTTCGCCGCTGTTATGGCTACCCTTGGGTTCCAA 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 AGGGTGCAACCTGTTGGAATCATCATTTTCGCCGCTGTTATGGCCACCCTTGGGTTCCAA 600
Query 601 GTGCTGCTTGTGGCAGCTGAGCAATTGATTTCAAATGAACCTTCAGAGAAAATGAATCAT 660
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 601 GTGCTGCTTGTGGCAGCTGAGCAATTGATTTCGAATGAACCTTCAGAGAAGATGAATCAT 660
Query 661 GTCCAATTGATTTGGTTGTATTCAATCATGCTAAGCGCAACCGCTATTAAACTCGTCTTA 720
||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 661 GTCCAATTGATTTGGTTATATTCAATCATGCTAAGCGCATCAGCTATTAAACTCGCCTTA 720
Query 721 TGGATCTACTGCAAAAGCTCGAGAAACCATATAGTCCGTGCATATGCAAAGGATCATCAC 780
|||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||
Sbjct 721 TGGATCTACTGCAAAAGCTCGAGAAATCATATAGTTCGTGCATACGCCAAGGATCATCAC 780
Query 781 TTTGATGTGGTAACAAATGTTCTTGGATTGGTTGCGGCCGTTCTTGCTAATGCTTTTTAC 840
|||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 781 TTTGATGTGGTAACAAATGTTCTTGGATTGGTCGCGGCCGTTCTTGCTAATGCCTATTAT 840
Query 841 TGGTGGCTCGATCCAACTGGTGCTATTCTCTTAGCCATCTACACTATTGTCAATTGGTCT 900
|||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 841 TGGTGGCTCGATCCGACTGGTGCTATTCTTTTAGCCATTTACACTATTGTCAACTGGTCT 900
Query 901 GGGACTGTTATGGAAAATGCAGTTTCATTGATCGGACAATCAGCTCCTCCAGAAGTACTA 960
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGGACCGTTATGGAAAATGCAGTTTCATTGATCGGACAATCAGCTCCTCCAGAAGTACTA 960
Query 961 CAAAAGTTGACATACCTAGTGATGCGACAAGGCGGCGATAATATCAAACATGTGGATACC 1020
|| ||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 961 CAGAAGCTGACATACCTAGTGATGCGCCAAGGTGGCGATAACATCAAACATGTGGATACC 1020
Query 1021 GTCCGTGCATATACCTTCGGTGTTCTTTATTTTGTCGAGGTGGATATAGAACTGCCAGAG 1080
||||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1021 GTCCGAGCCTATACCTTTGGTGTTCTCTATTTTGTCGAGGTGGATATAGAACTGCCAGAG 1080
Query 1081 GATTTGCCATTGAAAGAAGCTCATGCGATTGGTGAATCATTGCAAATAAAGCTTGAAGAA 1140
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1081 GATTTGCCATTGAAAGAAGCTCATGCTATTGGTGAATCATTGCAAATAAAGCTTGAAGAA 1140
Query 1141 CTTCCTGAGGTGGAAAGAGCTTTTGTTCATCTAGATTTTGAGTGTCATCACAAGCCTGAA 1200
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTTCCAGAGGTGGAAAGAGCTTTTGTTCATCTAGATTTTGAGTGTCATCACAAGCCTGAA 1200
Query 1201 CATTCCGTCCTTTCTACAATCCCCAACGATTTATGA 1236
||||| |||||||||||||||||||| |||||||||
Sbjct 1201 CATTCAGTCCTTTCTACAATCCCCAATGATTTATGA 1236
> Ahg909597 jgi|Araly1|909597|Al_scaffold_0002_2678
Length=1149
Score = 1160 bits (628), Expect = 0.0
Identities = 989/1159 (85%), Gaps = 41/1159 (4%)
Strand=Plus/Plus
Query 97 ATGAAATCG-AATTTCTTCGCGGATTTGCCTCAAAAACTTCGATCAAAAATCGATCCCGA 155
||||||||| |||| ||| |||||||||| ||||||||||| || ||||||||||| ||
Sbjct 1 ATGAAATCGAAATTCCTT-ACGGATTTGCCACAAAAACTTCGTTCCAAAATCGATCCGGA 59
Query 156 GAACCCTTTGCACCTTGATGTCTCCAAAGCTGCAGGCCTC--AA-A-G-AAG------A- 203
|||||||||||||||||||||| ||||| | | ||||||| || | | ||| |
Sbjct 60 GAACCCTTTGCACCTTGATGTCGCCAAAACCGTAGGCCTCAAAAGAGGCAAGTATCAAAG 119
Query 204 TGAAAAGGAGTACTACGAAAGACAATTGGCAACACTAAAATCCTTTGAAGAAGTAGAAAG 263
|||||||||||||||||||| ||| |||||||| || |||| |||||||| ||||||||
Sbjct 120 TGAAAAGGAGTACTACGAAAAACAGTTGGCAACCCTCCAATCATTTGAAGATGTAGAAAG 179
Query 264 TTTCTTAGCTCGATCAGATGAGTATACCATCGATGAAAAAGAAGAAGAAGAAGATCGAGC 323
||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 180 TTTCTTAGCTCGACCAGATGAGTATACCATCGAT-------AAGAAGAAGAAGATCGAGC 232
Query 324 TGAGAGAGCTGCACAAGAGCTTGCCATGCAAATCTCAAATTGGGCTAACATCTTTTTACT 383
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 233 TGAGAGAGCTGCACAAGAGTTTGCCATGCAAATCTCCAATTGGGCTAACATCTTTTTACT 292
Query 384 TGCTCTCAAG----ATATATGCTACGGTAAAGAGTGGATCCATTGCGATT-GCAGCATCT 438
|||||||||| |||||||||||| |||||||||||||||| || ||| | ||||||
Sbjct 293 TGCTCTCAAGGTGTATATATGCTACGATAAAGAGTGGATCCATAGCAATTAG-AGCATCA 351
Query 439 ACACTCGACTCATTGCTTGACCTTATGGCGGGAGGAATACTTTGGTTCACACATTTGTCT 498
||||| ||||| |||||||| || ||||| |||||||| || |||||||| ||| || ||
Sbjct 352 ACACTAGACTCTTTGCTTGATCTAATGGCTGGAGGAATTCTATGGTTCACGCATGTGGCT 411
Query 499 ATGAAGAACGTAAATATCTACAAATATCCTATAGGAAAGCTTAGGGTGCAACCTGTTGGA 558
||||||||| | ||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 412 ATGAAGAACTTTAATATCTACAAATATCCCATTGGAAAGCTTAGGGTACAACCTGTTGGA 471
Query 559 ATCATCATTTTCGCCGCTGTTATGGCTACCCTTGGGTTCCAAGTGCTGCTTGTGGCAGCT 618
||||| || ||||||||||||||||| || ||||| |||||| |||| ||||||||||||
Sbjct 472 ATCATTATCTTCGCCGCTGTTATGGCCACTCTTGGATTCCAATTGCTTCTTGTGGCAGCT 531
Query 619 GAGCAATTGATTT-CAAATGAACCTTCAGAGAAAATGAATCATGTCCAATTGAT-TTGGT 676
|| ||||| |||| |||||| ||||||||| ||||||||||||| ||||||| | |||||
Sbjct 532 GAACAATT-ATTTACAAATGTACCTTCAGAAAAAATGAATCATGACCAATTG-TGTTGGT 589
Query 677 TGTATTCAATCATGCTAAGCGCAACCGCTATTAAACTCGTCTTATGGATCTACTGCAAAA 736
| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 590 TATATTCAATCATGCTAAGTGCAACCGCTATTAAACTCGTCCTATGGATATACTGTAAAA 649
Query 737 GCTCGAGAAACCATATAGTCCGTGCATATGCAAAGGATCATCACTTTGATGTGGTAACAA 796
|||| ||||| ||||| || || | ||| |||||||||||||| ||||||||||| ||||
Sbjct 650 GCTCAAGAAATCATATTGTTCGCGTATACGCAAAGGATCATCAGTTTGATGTGGTGACAA 709
Query 797 ATGTTCTTGGATTGGTTGCGGCCGTTCTTGCTAATGCTTTTTACTGGTGGCTCGATCCAA 856
|| ||||||||||||| || || ||||||| ||||| || || |||||| | ||||||
Sbjct 710 ATATTCTTGGATTGGTCGCTGCTGTTCTTGGGAATGCCTTGTATTGGTGGATTGATCCAT 769
Query 857 CTGGTGCTATTCTCTTAGCCATCTACACTATTGTCAATTGGTCTGGGACTGTTATGGAAA 916
||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| ||||
Sbjct 770 CTGGTGCTATTCTCTTAGCAATCTACACTATAATCAATTGGTCTGGGACCGTTATAGAAA 829
Query 917 ATGCAGTTTCATTGATCGGACAATCAGCTCCTCCAGAAGTACTACAAAAG-TTGACATAC 975
||||||| || ||||| ||||||||||||||||| |||||| | |||||| || || |||
Sbjct 830 ATGCAGTCTCGTTGATAGGACAATCAGCTCCTCCGGAAGTATTGCAAAAGCTT-ACGTAC 888
Query 976 CTAGTGATGCGACAAGGCG-GCGATAATA-TCAAACATGTGGATACCGTCCGTGCATATA 1033
|||||| | |||||||| | | ||||| | | ||||||||||| || | ||||||||||
Sbjct 889 CTAGTGTTACGACAAGGAGTG-GATAACAAT-AAACATGTGGACACTATTCGTGCATATA 946
Query 1034 -CCTTCGGTGTTCTTTATTTTGTCGAGGTGGATATAGAACTGCCAGAGGATTTGCCATTG 1092
|||| || ||||| || |||||||||||||||||||| || ||||||||| || |||||
Sbjct 947 GCCTT-GGCGTTCTGTACTTTGTCGAGGTGGATATAGAGCTTCCAGAGGATATGTCATTG 1005
Query 1093 AAAGAAGCTCATGCGATTGGTGAATCATTGCAAATAAAGCTTGAAGAACTTCCTGAGGTG 1152
|| |||||||||| ||||||||| || |||| || ||||||||||| ||||| || ||
Sbjct 1006 AAGGAAGCTCATGAGATTGGTGAGGCAATGCAGATCAAGCTTGAAGACCTTCCAGAAGTT 1065
Query 1153 GAAAGAGCTTTTGTTCATCTAGATTTTGAGTGTCATCACAAGCCTGAACATTCCGTCCTT 1212
||||||||||| || ||| | || |||||||| | ||| |||||||| || || || | |
Sbjct 1066 GAAAGAGCTTTCGTACATATCGACTTTGAGTGCCGTCATAAGCCTGAGCACTCTGTTCGT 1125
Query 1213 TCTA-CAATCCCCAACGAT 1230
| || |||| || ||||||
Sbjct 1126 T-TAACAATTCCAAACGAT 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46166852487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5