BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58070.1
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486259 jgi|Araly1|486259|fgenesh2_kg.5__2251__AT3G58070.1 1182 0.0
Ahg935051 jgi|Araly1|935051|scaffold_403039.1 143 3e-33
> Ahg486259 jgi|Araly1|486259|fgenesh2_kg.5__2251__AT3G58070.1
Length=872
Score = 1182 bits (640), Expect = 0.0
Identities = 778/842 (92%), Gaps = 19/842 (2%)
Strand=Plus/Plus
Query 39 ctctctctctATGGACGAGGCTACCGGAGAAACAGAAACTCAAGATTTCATGAACGTCGA 98
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 10 CTCTCTCTCTATGGACGAGGCTGCCAGAGAAACAGAAACTCAAGATTTCATGAACGTCGA 69
Query 99 ATCCTTCTCTCAGCTTCCTTTCATTCGCCGTCCTAAAGATAAGAACCCTAAACCCATTCG 158
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 70 ATCCTTCTCTCAGCTTCCTTTCATTCACCGTCCTAAAGATAAGAACCCTAAACCCATTCG 129
Query 159 TGTCTTCGGAAAAGATTTCACCGGCAGAGATTTCTCTATTACTACCGGTCAAGAAGACTA 218
||||||||| ||||||||||||||| ||| |||||||| ||| |||||||||||||||||
Sbjct 130 TGTCTTCGGCAAAGATTTCACCGGCGGAGGTTTCTCTAGTACCACCGGTCAAGAAGACTA 189
Query 219 CACCGATCCTTACCAGACCAAAAACAaagaagaagaaga-g--gaagaagaCCAAACCGG 275
| ||||||| |||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 190 CTCCGATCCCTACCAGACCAAAGACAAAGAAGAAGAAGAAGAAGAAGAAGACCAAACCGG 249
Query 276 AGACAACAGTACGGACAATAATAGCATCAGCCACAACAGGAGATTCGAGTGTCACTATTG 335
||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 250 AGATAACAGTAAGGACAATAATAGCATCAGCAACAACAGGAGATTCGAGTGTCACTATTG 309
Query 336 CTTTAGAAATTTTCCTACTTCACAAGCCCTAGGTGGACACCAAAACGCTCACAAACGCGA 395
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CTTTAGAAACTTTCCTACTTCACAAGCCCTAGGTGGACACCAAAACGCTCACAAACGCGA 369
Query 396 ACGTCAGCTTGCCAAACGCGGTGTTTCCTCTTACTTTTATCATCCTGACAATAACCCTTA 455
||| ||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 370 ACGCCAGCTCGCCAAACGTGGTGTTCCCTCTTACTTTTATCATCCTGACAATAACCCTTA 429
Query 456 CAGTTACCGTCATTACCCGTCGTGGACCAATGGTCCGTTAACCGCGGCTAGGTCCTATGG 515
||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||
Sbjct 430 CAGTTACCGTCATTACCCGTCGTGGACCAGTGGTCCATTAACAGCGGCTAGGTCCTACGG 489
Query 516 AGGATTTTCTTCTGGTCCTAAGCCGTCGGGGTATTATACACGACCCAGCTATGGGAGTCA 575
||||| | ||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||
Sbjct 490 AGGATATGCTTCTGGTCCTCAGCTGTCGGCGTATTATACACGACCGAGCTATGGGAGTCA 549
Query 576 GTTAGGACTATGGCGTCTACCGCCTCGCGTTCAAGGCGTTTATAACTCAAACGCAGCGTT 635
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 550 GTTAGGGCTATGGCGTCTACCGCCTCGAGTTCAAGGCGTTTATAACTCAAACGCAACGTT 609
Query 636 TACTAGTAATGGCTCTTCTTCTTCTTCTAATTCGACTTTACCGTTGTTGACCCGTTCTCA 695
|||||||||||||||||||||| ||||||| ||||||||||||| || ||||||
Sbjct 610 TACTAGTAATGGCTCTTCTTCT------AATTCGAGTTTACCGTTGTTGGCCGGTTCTCG 663
Query 696 AACTCAACTATCATCGCAAGTGGGTGGCTCCGCTGCTCAGAACAGAATGTCATCGTAC-G 754
||| |||||| |||| ||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 664 AACCCAACTACCATCTCAAGTGGGTGGCTCCGCTGCTCAAAACAGAATGTCATCGTACCG 723
Query 755 GTTACGGATTGAGCCCTAACGTGCAAGATCATGTGAGTCTCGATCTTCATCTTTAAAGAT 814
|| ||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 724 GT-ACGGATTGAGCTCTAACTTGCAAGATCATGTTAGTCTCGATCTTCATCTTTAAAGAT 782
Query 815 TTGAAAACAAAATAAAACTC----T-TA-TTGAGTGTTATGTAACTTAGTGCAAG-AAAA 867
||||||||||| |||||||| | | |||||||||||||||||||||| ||| ||||
Sbjct 783 TTGAAAACAAATTAAAACTCGGAGTGTTGTTGAGTGTTATGTAACTTAGTG-AAGGAAAA 841
Query 868 AA 869
||
Sbjct 842 AA 843
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 957 TAAGAAACGGCACGATGTGTAAGATTCAC 985
|||||||||||||||||||||||||||||
Sbjct 844 TAAGAAACGGCACGATGTGTAAGATTCAC 872
> Ahg935051 jgi|Araly1|935051|scaffold_403039.1
Length=799
Score = 143 bits (77), Expect = 3e-33
Identities = 99/110 (90%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 308 ACAACAGGAGATTCGAGTGTCACTATTGCTTTAGAAATTTTCCTACTTCACAAGCCCTAG 367
|||||||||||||||| |||||||| ||||| ||||| || || ||||| ||||||||||
Sbjct 274 ACAACAGGAGATTCGAATGTCACTACTGCTTCAGAAACTTCCCAACTTCTCAAGCCCTAG 333
Query 368 GTGGACACCAAAACGCTCACAAACGCGAACGTCAGCTTGCCAAACGCGGT 417
||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 334 GTGGACACCAAAACGCTCACAAACGTGAACGTCAACACGCCAAACGCGGT 383
Score = 60.2 bits (32), Expect = 3e-08
Identities = 37/39 (95%), Gaps = 1/39 (3%)
Strand=Plus/Plus
Query 768 CCCTAACGTGCAAGATCATGTGAGTCTCGATCTTCATCT 806
||| || ||||||||||||||||||||||||||||||||
Sbjct 738 CCC-AATGTGCAAGATCATGTGAGTCTCGATCTTCATCT 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38771006589
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5