BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G58080.1

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938791 jgi|Araly1|938791|scaffold_502982.1                        202    6e-52


> Ahg938791 jgi|Araly1|938791|scaffold_502982.1
Length=220

 Score =  202 bits (109),  Expect = 6e-52
 Identities = 159/180 (88%), Gaps = 15/180 (8%)
 Strand=Plus/Plus

Query  1    ATGGATGAAAGAAGAGCAGTGGTCCTAGTGGACGAGTTGCATCTAAGAAAAGGAGGATAT  60
            ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| | 
Sbjct  21   ATGGATGAAAGAAGAGCAGTGGTCCAAGTGGAGGAGTTGCATCTAAGAAAAGGAGGAAAG  80

Query  61   GAAGCAGAGAAAGT--GA-------G------AGTGTTTGCTGTTAGGGTTTCTGAGACT  105
            ||||||||||||||  ||       |      ||||||||||||||||||||||||||||
Sbjct  81   GAAGCAGAGAAAGTGAGAGGTGTTTGTAACCAAGTGTTTGCTGTTAGGGTTTCTGAGACT  140

Query  106  TTGTGGGCTTTTAAGGCCTTGTGGGGTTCAACTCCATTCACGGGGACCACCTTTGTGTGA  165
            ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct  141  TTGTGGGCTTTTAAGGCCTTGTGGGGTTCAACTCCATTCACGGGGCCCCCCTTTGTGTGA  200



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5422733062


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5