BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58090.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348875 jgi|Araly1|348875|fgenesh1_pg.C_scaffold_5002267 538 3e-152
Ahg324296 jgi|Araly1|324296|fgenesh1_pm.C_scaffold_5001840 438 3e-122
Ahg949017 jgi|Araly1|949017|scaffold_800904.1 115 6e-25
Ahg494784 jgi|Araly1|494784|fgenesh2_kg.8__600__AT5G42500.1 115 6e-25
> Ahg348875 jgi|Araly1|348875|fgenesh1_pg.C_scaffold_5002267
Length=930
Score = 538 bits (291), Expect = 3e-152
Identities = 321/336 (96%), Gaps = 0/336 (0%)
Strand=Plus/Plus
Query 69 ATGGAGGACACTGGGAGCATTAAGCAAGAAGCACAGTCTCATCCTCCAGGGATCTTCGAG 128
|||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||
Sbjct 1 ATGGAGAACACTGGGAGCATTAAGCAAGAAGCACCGTCTCTTCCTCCGGGGATCTTCGAG 60
Query 129 ATACCGGGGGAGCCTGCGGTTGTTATCAATGGTGTGCCTGATGAACCTCAAACTGATTGT 188
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 61 ATACCGGGGGAGCCTGCGGTTGTTATCAATGGTGTGCCTGATGAACCGCAAACAGATTGT 120
Query 189 ATGATTGCCAAAGATGAACCAATATCAAGTGGCACTGTAGGAAGCGGGGAATGGCTTGAG 248
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 121 ATGATTGCCAAAGATGAACCAATATCAAGTGGCACTGTAGGAAGCGGCGAATGGCTTGTG 180
Query 249 GGTAGAGAAGTTCGCAAGTTTTTCTTGGGTCGCTACTATTCTGGTACGGTGACAAAGTTC 308
|||||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 181 GGTAGAGAAGTTCGGAAGTTTTTTTTGGGTCACTACTATTCTGGTATGGTGACAAAGTTC 240
Query 309 GATAAACAATCTGGATGGTACAGAGTTGAATATGAAGATGGGGATTCTGAAGATCTTGAC 368
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATAAACAATCGGGATGGTACAGAGTTGAATATGAAGATGGGGATTCTGAAGATCTTGAC 300
Query 369 TGGTCTGAGCTTGAAGAAGTGCTTCTACCTTTGGAT 404
||||||||||| ||||| ||||||||||||||||||
Sbjct 301 TGGTCTGAGCTAGAAGAGGTGCTTCTACCTTTGGAT 336
Score = 414 bits (224), Expect = 5e-115
Identities = 293/326 (90%), Gaps = 6/326 (2%)
Strand=Plus/Plus
Query 562 TCGTTGACGA-CATATTGACG-GTGGGACCTGAAATAACCTCAGAGGAAGTTGGGAGAGC 619
||| |||||| | ||||||| |||| ||||||| ||||||||||||| | ||||||||
Sbjct 608 TCGCTGACGATC-CATTGACGATTGGG-CCTGAAAGAACCTCAGAGGAAATCGGGAGAGC 665
Query 620 CCAAGGAAT-TTTCGCATCGGCCGACCAGAACAACTTTGGTCTGCTTATGGCTTTCAACT 678
|||||| || | | |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 666 CCAAGGGATGTAT-GCATCGGCTGACCAGAACAACTTTGGTCTGCTTATGGCTTTTAACT 724
Query 679 TTGTTTTCACAAAGGGTGAATTTTCCGGCAGCACCGTGTCCATGTATGGCCGGAATCCGA 738
| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 725 TGGTTTTCACCAAGGGTGAATTTTCCGGCAGCACCGCGTCGATGTATGGCCGGAATCCGA 784
Query 739 TATTTTCGAAGGTGAGAGAGATGCCGATCATCGGAGGTACTGGAGCATTCAGGTTCGGAA 798
|||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 785 TATTGTCGAAGCTGAGAGAGATGCCGATCATCGGAGGTACGGGAGCATTCAGGTTCGCAA 844
Query 799 GAGGATATGCACAAGCCAAGACTTTTACGTTCAATACTACCAGTGGAAATGCTGTGGTCA 858
||||||||||||| |||||||||||| |||||||| |||||||||| ||||||| |||
Sbjct 845 GAGGATATGCACAGGCCAAGACTTTTGTGTTCAATATTACCAGTGGAGATGCTGTTGTCG 904
Query 859 AGTATAATGTTTATATTTGGCATTAA 884
|||||||||| ||||| |||||||||
Sbjct 905 AGTATAATGTCTATATCTGGCATTAA 930
> Ahg324296 jgi|Araly1|324296|fgenesh1_pm.C_scaffold_5001840
Length=333
Score = 438 bits (237), Expect = 3e-122
Identities = 293/321 (91%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 564 GTTGACGACATATTGACGGTGGGACCTGAAATAACCTCAGAGGAAGTTGGGAGAGCCCAA 623
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 13 GTTGACGACATATTGACGGTGGGGCCTGAAATTACCTCAGAGGAAGTTGGGAGAGCCCAA 72
Query 624 GGAATTTTCGCATCGGCCGACCAGAACAACTTTGGTCTGCTTATGGCTTTCAACTTTGTT 683
|||||||| ||| || |||||||||| || ||| |||||||||||||||||||||| |||
Sbjct 73 GGAATTTTTGCAGCGACCGACCAGAATAAGTTTAGTCTGCTTATGGCTTTCAACTTGGTT 132
Query 684 TTCACAAAGGGTGAATTTTCCGGCAGCACCGTGTCCATGTATGGCCGGAATCCGATATTT 743
||||| |||||||||||||| |||||||| | ||| ||||||||||||||||||||| |
Sbjct 133 TTCACCAAGGGTGAATTTTCGGGCAGCACGGGGTCGATGTATGGCCGGAATCCGATAATG 192
Query 744 TCGAAGGTGAGAGAGATGCCGATCATCGGAGGTACTGGAGCATTCAGGTTCGGAAGAGGA 803
|| |||||||||||||||||||||||||||||||| ||||| || ||||| || ||||||
Sbjct 193 TCAAAGGTGAGAGAGATGCCGATCATCGGAGGTACGGGAGCTTTTAGGTTTGGTAGAGGA 252
Query 804 TATGCACAAGCCAAGACTTTTACGTTCAATACTACCAGTGGAAATGCTGTGGTCAAGTAT 863
||||| || ||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 253 TATGCGCAGGCCAAGACTTTTACGTTCAATACTACCCGTGGAAATGCTGTGGTCGAGTAT 312
Query 864 AATGTTTATATTTGGCATTAA 884
||||| ||||| |||||||||
Sbjct 313 AATGTCTATATCTGGCATTAA 333
> Ahg949017 jgi|Araly1|949017|scaffold_800904.1
Length=598
Score = 115 bits (62), Expect = 6e-25
Identities = 170/220 (77%), Gaps = 15/220 (7%)
Strand=Plus/Plus
Query 671 TTTCAACTTTGTTTTCAC-AAAGGGTGAATTTTCCGGCAGCACCGT-GTCCATGTATGGC 728
||| ||||| | |||||| || || || ||| || |||||| | | | |||||||||
Sbjct 372 TTT-AACTTGGCTTTCACGGAA-GGAGAGTTTAATGGAAGCACCCTCG-CGATGTATGGC 428
Query 729 CGGAATCCGATATTTTCGAAGGTGAGAGAGATGCCGATCATCGGAGGTACTGGAGCATTC 788
|||||| ||||||||||||||||||||||||||||| || ||||| || || || |||
Sbjct 429 CGGAATGATATATTTTCGAAGGTGAGAGAGATGCCGATTATTGGAGGAACCGGTGCTTTC 488
Query 789 AGGTTCGGAAGAGGATATGCACAAGCCAAGACTTTTACG-TTCAATACTACCAGTGGAAA 847
||||| | ||||| |||||||| |||||||||| || | || | | | || |
Sbjct 489 AGGTTTGCTAGAGGGTATGCACAGGCCAAGACTTATAAGATTGT-TGGT-CTAG---A-- 541
Query 848 TGCTGTGGTCAAGTATAATGT-TTATATTTGGCATTAATT 886
||| |||||| |||||||||| || ||||||||||||||
Sbjct 542 TGCCGTGGTCGAGTATAATGTCTTC-ATTTGGCATTAATT 580
> Ahg494784 jgi|Araly1|494784|fgenesh2_kg.8__600__AT5G42500.1
Length=620
Score = 115 bits (62), Expect = 6e-25
Identities = 170/220 (77%), Gaps = 15/220 (7%)
Strand=Plus/Plus
Query 671 TTTCAACTTTGTTTTCAC-AAAGGGTGAATTTTCCGGCAGCACCGT-GTCCATGTATGGC 728
||| ||||| | |||||| || || || ||| || |||||| | | | |||||||||
Sbjct 357 TTT-AACTTGGCTTTCACGGAA-GGAGAGTTTAATGGAAGCACCCTCG-CGATGTATGGC 413
Query 729 CGGAATCCGATATTTTCGAAGGTGAGAGAGATGCCGATCATCGGAGGTACTGGAGCATTC 788
|||||| ||||||||||||||||||||||||||||| || ||||| || || || |||
Sbjct 414 CGGAATGATATATTTTCGAAGGTGAGAGAGATGCCGATTATTGGAGGAACCGGTGCTTTC 473
Query 789 AGGTTCGGAAGAGGATATGCACAAGCCAAGACTTTTACG-TTCAATACTACCAGTGGAAA 847
||||| | ||||| |||||||| |||||||||| || | || | | | || |
Sbjct 474 AGGTTTGCTAGAGGGTATGCACAGGCCAAGACTTATAAGATTGT-TGGT-CTAG---A-- 526
Query 848 TGCTGTGGTCAAGTATAATGT-TTATATTTGGCATTAATT 886
||| |||||| |||||||||| || ||||||||||||||
Sbjct 527 TGCCGTGGTCGAGTATAATGTCTTC-ATTTGGCATTAATT 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5