BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58100.1
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898761 jgi|Araly1|898761|Al_scaffold_0005_2727 802 0.0
Ahg891509 jgi|Araly1|891509|Al_scaffold_0007_3495 209 2e-53
Ahg940231 jgi|Araly1|940231|scaffold_600775.1 198 5e-50
> Ahg898761 jgi|Araly1|898761|Al_scaffold_0005_2727
Length=522
Score = 802 bits (434), Expect = 0.0
Identities = 494/523 (94%), Gaps = 3/523 (1%)
Strand=Plus/Plus
Query 180 TGT-TCTCATCTGCGTCTCTCTATTCTCGCTGCGACGGCGGCGATGTTAATGGTGATTAC 238
||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2 TGTATCTC-TCT-CGTCTCTCTCTTCTCGCTGCGACGGCGGCGATGTTAATGGTGATTGC 59
Query 239 GACTGCGCAGATCGGCGGTCAAGTGATACAGGTGGAGTTATGGTGTGTGGCGAAGAACAA 298
||||||||||||||| ||||||||| | || |||||||||||||||||||||||||||||
Sbjct 60 GACTGCGCAGATCGGAGGTCAAGTGTTGCAAGTGGAGTTATGGTGTGTGGCGAAGAACAA 119
Query 299 CGCGGAAGATTCGTCGCTACAGACGGCGATTGAGTGGGCTTGTGGTCAAGGCGGAGCCGA 358
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 120 CGCGGAAGATTCGTCGCTCCAGACGGCGATTGAGTGGGCTTGTGGTCAAGGCGGCGCTGA 179
Query 359 TTGTGGTCCGATTCAGCAAGGTGGACCTTGTAACGACCCGACGGATGTTCAGAAAATGGC 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTGTGGTCCGATTCAGCAAGGTGGACCTTGTAACGACCCGACGGATGTTCAGAAAATGGC 239
Query 419 GTCGTTTGTTTTCAACAATTATTATCTGAAGAACGGCGAGGAGGACGAAGCTTGCAATTT 478
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 GTCGTTTGTTTTCAACAATTATTATCTGAAGAACGGCGAGGAGGACGAGGCTTGCAATTT 299
Query 479 CAACAATAACGCTGCTCTTACTTCACTCAATCCAAGTCAGGGAACTTGCAAATATCCTTC 538
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 300 CAACAATAACGCTGCTCTTACTTCACTCAATCCCAGTCAAGGAACTTGCAAATATCCTTC 359
Query 539 GAGTAAGGGAGCCAACAATGGTCGATTAGCGGATGACACTTCAATGGGTGCAGGACAAGC 598
||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 360 GAGTAAGGGAGTCAACAATGGTCGAGTAGCGGATGACACTTCAACGGGTGCAGGACAAGC 419
Query 599 AGATATGAGCCGTGGTGGCAGACCGATTTCCAGCAGTTGGATGGTGACCTTCATCGGTTT 658
| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 420 ATATATGAGCCGTGGTGGCAGACCGGTTTCCAGCAGTTGGATTGTGACCTTCATCGGTTT 479
Query 659 CGGTAGCTTATTGACGATGACATGGATAATTCATCATCTTTAG 701
| ||| |||||| ||||||| |||||||||||||| |||||
Sbjct 480 CACCAGCCTATTGATGATGACACGGATAATTCATCATTTTTAG 522
> Ahg891509 jgi|Araly1|891509|Al_scaffold_0007_3495
Length=477
Score = 209 bits (113), Expect = 2e-53
Identities = 123/128 (96%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 414 ATGGCGTCGTTTGTTTTCAACAATTATTATCTGAAGAACGGCGAGGAGGACGAAGCTTGC 473
|||||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||
Sbjct 1 ATGGCGTCGTTTGTTTTCAACAATTATTCTGTGAAGAACGGCGAAGAGGACGAGGCTTGC 60
Query 474 AATTTCAACAATAACGCTGCTCTTACTTCACTCAATCCAAGTCAGGGAACTTGCAAATAT 533
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AATTTCAACAATAACGCTGCTCTTACTTCACTCAATCCCAGTCAGGGAACTTGCAAATAT 120
Query 534 CCTTCGAG 541
||||||||
Sbjct 121 CCTTCGAG 128
> Ahg940231 jgi|Araly1|940231|scaffold_600775.1
Length=317
Score = 198 bits (107), Expect = 5e-50
Identities = 115/119 (97%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 393 GACCCGACGGATGTTCAGAAAATGGCGTCGTTTGTTTTCAACAATTATTATCTGAAGAAC 452
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 GACCCGACGGATGTTCAGAAAATGGCGTCGTTTGTTTTCAACAATTATTCTCTGAAGAAC 60
Query 453 GGCGAGGAGGACGAAGCTTGCAATTTCAACAATAACGCTGCTCTTACTTCACTCAATCC 511
||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCAAAGAGGACGAGGCTTGCAATTTCAACAATAACGCTGCTCTTACTTCACTCAATCC 119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33319429458
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5