BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58110.1
Length=2708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486261 jgi|Araly1|486261|fgenesh2_kg.5__2253__AT3G58110.1 3485 0.0
> Ahg486261 jgi|Araly1|486261|fgenesh2_kg.5__2253__AT3G58110.1
Length=2391
Score = 3485 bits (1887), Expect = 0.0
Identities = 2242/2409 (93%), Gaps = 42/2409 (2%)
Strand=Plus/Plus
Query 1 AGTTTAGCTTTTCCGAGGAG--AA-GATCAGCCATGGCTTCTTCTCCGCCGTCAGATCCC 57
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1 AGTTTAGCTTTTCCGAGGAGAAAATCATCAGCCATGGCTTCTTCTCCGCCGTCAGATCCC 60
Query 58 ACCGATCGAGATGCAGAAACTCTTTC-GCAGAACCCTAGTTTAATCGAGAAGCCGAGCGT 116
|||||||||||||||||| ||||||| | ||||||||||||||| ||||| ||||| |
Sbjct 61 ACCGATCGAGATGCAGAAGCTCTTTCTG-GGAACCCTAGTTTAATTGAGAAACCGAGTTT 119
Query 117 AGTAGAGCAAGGAAGTCTTTCCGTGGAGAAT--G---T-CG---CTGAA-AAAGCCTTAA 166
|||||||||||||||| |||| |||||||| | | || || || |||||| |||
Sbjct 120 AGTAGAGCAAGGAAGTATTTCATTGGAGAATGCGAATTCCGTCCCT-AACAAAGCCCTAA 178
Query 167 ATTTAGAATCAACACAAGACGAAGAAACGCAGAACT-TGCAGGATCTGGAGGAGTCCGAC 225
|| ||||||||||||| ||||||||||| ||||| | ||||||||| |||||| ||||||
Sbjct 179 ATCTAGAATCAACACAGGACGAAGAAACACAGAA-TCTGCAGGATCCGGAGGAATCCGAC 237
Query 226 GGTAGAGATCAGCAATTAGAAGCTTCGCTTGAGGAAAGTAGGAACGAAGAGGACGATATG 285
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 238 GGTAGAGATCAGCAGTTAGAAGCTTCGATTGAGGAAAGTAGGAACGAAGAGGACGATATG 297
Query 286 GACACGACGCAAGCCGTAAGCTCTTCTTATTACCGCCGTGGAGGTGGACCAAAGCGGAAG 345
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 GACACGACGCAAGCCGTTAGCTCTTCTTATTACCGCCGTGGAGGTGGACCGAAGCGGAAG 357
Query 346 AAAGGGAATCAGAAGAAACGAAAGCAGCTAGAGAAGTCAAAAGAGAAACTTGAGGTACTT 405
||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 358 AAAGGGATTCAGAAGAAACGAAAGCAGCAAGAGAAGTCAAAAGAGAAGCTTGAGGTACTT 417
Query 406 TTGAAAACTTTGAAGCCGATAGCTTTCGCTCCATGTAAAACCCTAGATTTTGCTCGGCAT 465
|||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct 418 CTGAAAACTTTGAAGCCCATTGCTTTCGTTCCATGTAAAACCCTAGATTTTGCTCGGCAT 477
Query 466 GAGAAGCTATTGAAGACGTTAGGTCTGTGGGATTTTGTGCATTTGGATTTTGATCAAAAT 525
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 GAGAAGCTCTTGAAGACGTTAGGTCTGTGGGATTTTGTGCATTTGGAGTTTGATCAAAAT 537
Query 526 ATCCGTGAGGATCTAGTAGCGAACCTTGTTGCGTATTATAATTCAGAGCGTCGATGCAGC 585
|||||| |||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 538 ATCCGTCAGGATCTAGTGGCGAACCTTGTTGCGTATTATAATTCAGAGGGCCGATGCAGC 597
Query 586 TATGTAAATGGGGCTAGGATTAACGTCAGCCGTCCCGATTTGGCTCGAGCGTTGAAGTTG 645
||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 598 TATGTTAATGGGGCTAGGATTAACGTCAGCCGTGCTGATTTGGCTCGAGCGTTGAAGTTG 657
Query 646 CCTATGAAGAAAGACTTTGTTGTTACAGAGGAGGAGAGAGAACTTCTGGAAAACGATGAA 705
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CCTAAGAAGAAAGACTTTGTTGTTACAGAGGAGGAGAGAGAACTTCTGGAAAACGATGAA 717
Query 706 TCGGTTAGGTTTATTGATGAGATTGTTTCAACTTGTGTTCTACTGCAAAGAGATGATATG 765
|| ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||
Sbjct 718 TCTGTTAGGTTTATTGATGAGATTCTTTCAACTTGGGTTCTATTGCAAAGAGATGATATG 777
Query 766 TGGATTATGCCTGTAGAGATTGTTGAATGGACAAGGGATATAAAGCAAAAGCATTTGGAA 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TGGATTATGCCTGTAGAGATTGTTGAATGGACAAGGGATATAAAGCAAAAGCATTTGGAA 837
Query 826 AAGTTAGACTGGCCCAAATTGCTCTGGTTCATGGTTGAGAAAGAACTGAAAGCGGAGCCT 885
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAGTTAGACTGGCCTAAATTGCTCTGGTTCATGGTTGAGAAAGAACTGAAAGCGGAGCCT 897
Query 886 CCGCTTGGTGATTGtttttttGCTTCTCATCTGCAGCTGTTGATCAAATCACAGAAAGAA 945
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 898 TTGCTTGGTGATTGTTTTTTTGCTTCTCATCTGCAGCTGTTGATCAAAACACAGAAAGAA 957
Query 946 GATTTGCTAAAGGAGAAATGTAAGGCtgatgatgaggaggatgatgatgatgatgatgac 1005
||||| |||||||| |||||||| || |||||||||| ||||||||||||||| || |||
Sbjct 958 GATTTACTAAAGGAAAAATGTAAAGCGGATGATGAGGGGGATGATGATGATGACGACGAC 1017
Query 1006 gatgTAAAGGAGGTTGATTTTTTGGTAAAATCACCAAAAGAAGATTGTTTGGAGGTTAAG 1065
||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 1018 GATGTAAAGGAGGTTGATTTTATGGTAAAATCTCCGAAAGAAGATTGTTTGGAGGTTAAG 1077
Query 1066 GAAGAAGATGTTGGTGCTGCAGATTCAAGAAAGGATGATGGTGCTGTCGACTTGAAAGAA 1125
|||||||||| |||||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct 1078 GAAGAAGATGCTGGTGCTGCAGATTCAGGAAAGGATGATGGTGCCATCGACTCGAAAGAA 1137
Query 1126 GACAAGTATGTGGAAGAACATATGCTCGAACTGAATCTCGGGCAAGAGACAGTGTCAGAA 1185
|||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 1138 GACAAGTATGTGGAAGAACATATGATCGAATTGAATCTCGGGCAAGAGACTGTGTCAGAA 1197
Query 1186 ATGGTCTCTGGGGAAGAGCGAGGTCCTGTTGAGGGACAGCCAATGGATGTTGAGGAAAAT 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATGGTCTCTGGGGAAGAGCGAGGTCCTGTTGAGGGACAGCCAATGGATGTTGAGGAAAAT 1257
Query 1246 AAGAAAGAAGAGGATGAAAGGTGGGCATGGAATG--GAGACTCTCATGCTGGTTCTCATT 1303
|||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct 1258 AAGAAAGAAGAGGATGAAAGGTGGGCATGGAATGAAGAGAC-C-CATGCTGGTTCTCATT 1315
Query 1304 TCCTTCGCCGTTGCAATCATAGTAGTGCCAGGGAGGGAGACGAAGATAATCATATAGAAG 1363
||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1316 TCCTTCGCCGTTGCAGTCTTAGTAGTGCTAGGGAGGGAGACGAAGATAATCATATTGAAG 1375
Query 1364 GATCCATGGAAATGGGAGAAGATGAACCAATTGAAGATGTCGAGGAAGAGGAAACTGAGG 1423
||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||
Sbjct 1376 GATCCATGGAAATGGGAGAAGATGAGCCAATTGAAGATGTCGGGGAAGAGGA---TGAGG 1432
Query 1424 AAGATACAGAAAAGCATGAAGGGGGGTTTCCtttttttCCAAATGGTGATTCCCTCCAGG 1483
||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct 1433 AAGATACAGAAAAGCATGAAGAGGGGTTTCCTTTTTTTCCAAATGGCGATTCCCTTCAGG 1492
Query 1484 GAGTTGGCCAAGGGAATCTCATGTTGGGAGATGCATCTCCGTTAGGTTACAACTCTGGGT 1543
|||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1493 GAGTTGGCCAAGAGAATCTCATGTTGGGGGATGCATCTCCGTTAGGTTATAACTCTGGGT 1552
Query 1544 TACAAATTCATGGCAATTCAATTGGTGGTGATTTCCTTGCTTCTAGGGGTGAGATGCATA 1603
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1553 TACAAATTCATGGCAATTCAATTGGTGGTGATTTCCTTGCTTCTAGGGTTGACATGCATA 1612
Query 1604 TGGCTATGGGTTCAGGTAGTTCTTCTCTGTTCGGGAATGGCAATAACAAGAGGGAGATTG 1663
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1613 TGACTATGGGTTCAGGTAGTTCTTCTCTGTTCAGGAATGGCAATAACAAGAGGGAGATTG 1672
Query 1664 AACACGAGAATGGTATTACTTATCATTCTCATAACCCCATTAATAAGAGGTTGAGGACCG 1723
||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1673 AACACGAGAATCATATTTCTTATCATTCTCATAACCCCGGCAATAAGAGGTTGAGGACCG 1732
Query 1724 AAGAACCCTCTTGGGATGAAAAACCACCCCCAGTTGACATGTGTTTGGATCAGATGGCGT 1783
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1733 AAGAACCTTCTTGGGATGAAAAACCACCCCCAGTTGACATGTGTTTGGATCAGATTGTGT 1792
Query 1784 ACTGGGCGGAAAAAGCTAGATTGTCATTTGCTGAAAAAGATCGAGAGCGTGAACAATCTG 1843
||||| |||||| ||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct 1793 ACTGGATTGAAAAAACTAGATTATCAAATGCTGAAAAAGACCGAGAGCGTGAACAATCTG 1852
Query 1844 TTATAAACCAGCAGTACCTGATGAACGAGCTACAAAGCAAGACAGCAATGATTCAGGAAT 1903
|||| ||||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1853 TTATGAACCACCAGTATCTGATGAACGAACTACAAAGCAAGGCAGCAATGATTCAGGAAT 1912
Query 1904 TGGAAAGAACCAAGTTTGAGGAGCAACAGAGAAAAGATATAATGATCTATAAGCTTGAGA 1963
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1913 TGGAAAGAACCAAGTTTGAGGAGCAACAGAGAAAAGATATGATGATCTATAAGCTTGAGA 1972
Query 1964 GTGAGCTTCGTATGATGACAAGTGTAGTTGAGGGTTATAGGAAGGCTTTGAAA-ATAACA 2022
|||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||
Sbjct 1973 GTGAGCTTCGTATGATGACAAGTGTAGTAGAGGGTTATAGGAAGGCTTTGAAAGA-AACA 2031
Query 2023 CAAAAGGCGTCAAGAGAGCACAGAAAACGTTGCCCTTTACGTGATGATAAACAAGTTTAC 2082
|||||||| ||||||||||||||||||||||||||||| |||||||| |||| || |||
Sbjct 2032 CAAAAGGCATCAAGAGAGCACAGAAAACGTTGCCCTTTGCGTGATGAGAAACCGGTCTAC 2091
Query 2083 ATGGATGTCAAAGGTTCTGGAGGTTTAGTCCTGAGCACTACTGAAATTGAAAAGCTGAGA 2142
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2092 AAGGATGTCAAAGGTTCTGGAGGTTTAGTCCTGTGCACTACTGAAATTGAAAAGCTGAGA 2151
Query 2143 TTGAAGCAAGAAGAGGAAGACAGGATG-CAACGAGTTCTAGCTA-AAAGACAGATTGACG 2200
|||||||||||||||||||| || ||| || ||| ||||| || ||||||||||||| |
Sbjct 2152 TTGAAGCAAGAAGAGGAAGATAGAATGACA-CGAACTCTAG-TAGAAAGACAGATTGAGG 2209
Query 2201 ATTTTGAACA-TAACTGGCTTAATAAATTTGAAGAACACATGGAGGCAGTAGAATTGCTG 2259
| |||||| | | | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2210 ACTTTGAA-AGTCAGTGGCTTAATAAATTTGAAGAACACATGGAGACAGTAGAATTGCTA 2268
Query 2260 AACGAGAGATT-GATCGAGAATGAGGATGAAGTGAAGAT-CTTGAGAGAAACACTTTCGG 2317
||||||||||| | |||||||||| ||||||||||||| || |||||||||||||||||
Sbjct 2269 AACGAGAGATTCG-TCGAGAATGAAAATGAAGTGAAGATACT-GAGAGAAACACTTTCGG 2326
Query 2318 AAAGCAAGAAT-ATTGAGACATCTGAAGTTGCTGCTGCTATGGAAGAAACTGCTACAGAA 2376
||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 2327 AAAGCAAGAATCAT-GAGACATCTGAAGTTGCTGCTGCTATAGAAGAAACT---ACAGAA 2382
Query 2377 GAAACATGA 2385
||||| |||
Sbjct 2383 GAAACTTGA 2391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102158037090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5