BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58120.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486262 jgi|Araly1|486262|fgenesh2_kg.5__2254__AT3G58120.1 2231 0.0
Ahg483330 jgi|Araly1|483330|fgenesh2_kg.4__2390__AT2G42380.2 579 3e-164
> Ahg486262 jgi|Araly1|486262|fgenesh2_kg.5__2254__AT3G58120.1
Length=1525
Score = 2231 bits (1208), Expect = 0.0
Identities = 1457/1567 (93%), Gaps = 57/1567 (4%)
Strand=Plus/Plus
Query 1 CTGTTTTGTATAACTACTCTTTGTTATACATAGCCATTTTAGTTACTCTGGTTTGTTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTGTTTTGTATAACTACTCTTTGTTATACATAGCCATTTTAGTTACTCTGGTTTGTTTCT 60
Query 61 CATCCCA-T-tctctctctc-tt-tctctAATGGTTCTTAATCTGTTTTAGCATTTTGAT 116
||||||| | |||||||||| || ||||||||||||||| |||||||||| ||||||||
Sbjct 61 CATCCCATTCTCTCTCTCTCTTTCTCTCTAATGGTTCTTCCTCTGTTTTAGGATTTTGAT 120
Query 117 CATCTAAAACTTTCAATTTCTCTCTTGATCCTCACTTGAATTTTTTGTTGTTTCTCTCAA 176
||||||||| ||| || || |||||||||||||||||||| ||| |
Sbjct 121 CATCTAAAATTTTTAA-TT-TCTCTTGATCCTCACTTGAA------------TCT-T--- 162
Query 177 ATCTTTGATCCTTTCCTTTGTTTTTCATTTGACCTCTTACaaaaaaaTCTGGTGTGCCAT 236
| ||||||| ||||||||||||||| | | |||||||||| |||||||||
Sbjct 163 -T-TTTGATCATTTCCTTTGTTTTTC-----A-----T--AAAAAAATCTAGTGTGCCAT 208
Query 237 TAAATCTTTATTAATGGCACAACTTCCTCCGAAAATCCCAACCATGACGACGCCAAATTG 296
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 209 TAAATC-TTATTAATGGCACAACTCCCTCCGAAAATCCCAACCATGACAACGCCAAATTG 267
Query 297 GCCTGACTTCTCCTCCCAGAAACTCCCTTCCATAGCCGCAACGGCGGCAGCCGCAGCAAC 356
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 268 GCCTGACTTCTCCTCCCAGAAACTCCCTTCCATCGCCGCAACGGCCGCGGCCGCAGCAAC 327
Query 357 CGCTGGACCTCAACAACAAAACCCTTCATGGATGGATGAGTTTCTCGACTTCTCAGCGAC 416
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 328 CGCCGGACCACAACAACAAAACCCTTCATGGATGGATGAGTTTCTCGACTTCTCGGCGAC 387
Query 417 TCGCCGTGGGACTCACCGTCGTTCTATAAGCGACTCCATTGCTTTCCTTGAACCACCTTC 476
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 388 TCGCCGTGGGACTCACCGTCGTTCAATAAGCGACTCCATTGCTTTTCTTGAGCCACCTTC 447
Query 477 CTCCGGCGTCGGAAACCACCACTTCGATAGGTTTGACGACGAGCAATTCATGTCCATGTT 536
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 448 CTCCGGCGTTGGAAACCACCACTTCGATAGGTTTGACGATGAGCAATTCATGTCCATGTT 507
Query 537 CAACGACGACGTACACAACAATAACCA-CAATCATCATCATCATCACAGCATCAACGGCA 595
||||||||||||||||||||| || || | ||||||||||||| |||| |||||||||||
Sbjct 508 CAACGACGACGTACACAACAACAATCATC-ATCATCATCATCACCACAACATCAACGGCA 566
Query 596 ATGTGGGTCCCACGCGTTCATCCTCCAACACCTCCACGCCGTCCGATCATAATAGCCTTA 655
||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 567 ATGTGGGTCCCACGCGTTCTTCCTCCAACACCTCCACGCCATCCGATCACAATAGCCTTA 626
Query 656 GCGACGACGACAACAACAAAGAAGC-ACCACCGTCCGATCATGATCATCACATGGACAAT 714
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 627 GCGACGACGACAACAACAAAGAA-CAACCACCGTCCGATCATGATCATCACATGGACAAT 685
Query 715 AATGTAGCCAATCAAAACAACGCCGCCGGTAACAATTACAACGAATCAGACGAGGTCCAA 774
|| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 686 AACGTAACCAATCAAAACAACGCCGCCGGTAATAATTACAACGAATCGGACGAGGTCCAA 745
Query 775 AGCCAGTGCAAGACGGAGCCACAAGATGGTCCGTCGGCGAATCAAAACTCCGGTGGAAGC 834
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 746 AGCCAGTGCAAGACGGAGCCACAGGATGGCCCGTCAGCGAATCAAAACTCCGGTGGAAGC 805
Query 835 TCCGGTAATCGTATTCACGA-CCCTAAAAGGGTAAAAAGAATTTTAGCAAATAGGCAATC 893
|||||||| || |||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 806 TCCGGTAACCGGATTCACGATCCC-AAAAGGGTAAAAAGAATTTTAGCAAATAGGCAATC 864
Query 894 AGCACAGAGATCAAGGGTGAGGAAATTGCAATACATATCAGAGCTTGAAAGGAGCGTTAC 953
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 865 AGCACAGAGATCAAGGGTGAGGAAACTGCAATACATATCAGAGCTTGAACGGAGCGTTAC 924
Query 954 TTCATTGCAGACTGAAGTGTCAGTGTTATCGCCAAGAGTTGCGTTTTTGGATCATCAGCG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TTCATTGCAGACTGAAGTGTCAGTGTTATCGCCAAGAGTTGCGTTTTTGGATCATCAGCG 984
Query 1014 ATTGCTTCTCAACGTCGACAATAGTGCTATCAAGCAACGAATCGCAGCTTTAGCACAAGA 1073
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 985 ATTGCTTCTCAACGTTGACAATAGTGCTATCAAGCAACGAATCGCAGCTTTGGCCCAAGA 1044
Query 1074 TAAGATTTTCAAAGACGCTCATCAAGAAGCATTGAAGAGAGAAATAGAGAGACTTCGACA 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TAAGATTTTCAAAGACGCTCATCAAGAAGCATTGAAGAGAGAAATAGAGAGACTTCGACA 1104
Query 1134 AGTATATCATCAACAAAGCCTCAAGAAGATGGAGAATAATGTCTCCGATCAATCTCCGGC 1193
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1105 AGTATATCATCAACAAAGCCTCAAGAAAATGGAGAATAATGTCTCCGATCAATCTCCGGC 1164
Query 1194 CGATATCAAACCGTCCGTTGAGAAGGAACAGCTCCTCAATGTCTAAAGCTGTTCGTTCAC 1253
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1165 CGATATCAAACCGTCCGTTGAGAAGGAGCAGCTCCTCAATGTCTAAAGCTGTTCGTTCAT 1224
Query 1254 TAAGATCTT-TCTT-TTCATGGCGAAAAGATTCTTGACTATAAAACCTCTTTGTGTCAAG 1311
||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1225 TAAGATCTTAT-TTCTTCATGGCGAAAAGATTCTTGACTATAAAACCTCTTTGTGTCAGG 1283
Query 1312 AAATTAATTTATCAAAGAAGATGGCCTTTTT-T--ATTTGATCTAATCACAtttttttAA 1368
||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 1284 AAATTAATTTATCAAAGAAGAAACCCTTTTTATTTATTTGATCTAATCACATTTTTTTAA 1343
Query 1369 GTTGTGATGAATTTGCTTTTGATGTATCTGtttttttttttttttCTTATGGAGTGGGAG 1428
|||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||
Sbjct 1344 GTTGTGATGAATTTGCTTTTGATGTATCTGATTTTTTGTTTTTTTCTT--GGAGTGGGAG 1401
Query 1429 GGGGAAA-GTGGGAATGATATGTAAAAAGAACTTAGCTGATTTGTTGTTTATTCAAtttt 1487
||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 GGGTAAAAGTTGGAATGATATGTAAAAAGAACTTAGCTGATTTGTTGTTTATTCAATTTT 1461
Query 1488 tttGTTGGAGTGTCTATGCATTGTGTACTAATTGATATTTTT-TCCGAATGAttttt-tt 1545
|| ||||||||||||| ||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 1462 TT-GTTGGAGTGTCTAAGCATTGTGTACTAATTGATATTTTTCTC-GAATG-TTTTTATT 1518
Query 1546 ttCCATC 1552
|||||||
Sbjct 1519 TTCCATC 1525
> Ahg483330 jgi|Araly1|483330|fgenesh2_kg.4__2390__AT2G42380.2
Length=1492
Score = 579 bits (313), Expect = 3e-164
Identities = 755/952 (79%), Gaps = 95/952 (10%)
Strand=Plus/Plus
Query 243 TTTATT-AATGGCACAACTTCCTCCGAAAAT-CCCAACCATGACGACGCCAA-ATTGGCC 299
||| || |||||||||||||||||| ||||| ||||| |||||| | ||| |||||||
Sbjct 260 TTTCTTCAATGGCACAACTTCCTCCTAAAATCCCCAA-CATGAC-A---CAACATTGGCC 314
Query 300 TGACTTCTCCTCCCAGAAA---CTC-CCTTCCA-TAGCCGCAACGGCGGCAGCCGC-A-- 351
||| ||||| ||||| ||| ||| |||| || || || |||| || | | |||| |
Sbjct 315 TGATTTCTCTTCCCA-AAAGCTCTCTCCTTTCACTA-CCCCAACCGC-G-A-CCGCTATC 369
Query 352 GCAACCGCT-GGACCTCAAC-AACAAAACCCTTCATGGATGGATGAGTTTCTCGACTTCT 409
|| ||||| ||| | | ||||||||| |||||| | || || || || |||||||
Sbjct 370 GCCGCCGCTACAACCGC--CGTACAAAACCCCTCATGGGTCGACGAATTCCTAGACTTCT 427
Query 410 CAGCGACTCGCCGTGG-GACTCACCGTCGTTCTATAAGCGACTCCATTGCTTTCCTTGAA 468
||||| |||||||||| || ||||||||||| || |||||||| || | ||||| |||
Sbjct 428 CAGCGTCTCGCCGTGGCAAC-CACCGTCGTTCCATCAGCGACTCTATCACATTCCTCGAA 486
Query 469 CCACCTTCC-TCCGGCGTCGGAA-ACCACCACTTCGATAGGTTTGACGACGAGCAATTCA 526
| || || | | || || ||| ||||||||||||| ||||| |||||||| || ||||
Sbjct 487 GCTCCAACCGT-CAGCATC-GAAGACCACCACTTCGACAGGTTCGACGACGAACAGTTCA 544
Query 527 TGTCCATGTTCA---ACGACGACGTAC-ACAACAATAACCACAATCATCATCATCATCAC 582
|||| ||||||| ||||||||| | | | ||||| | | || ||| |||| ||
Sbjct 545 TGTCAATGTTCACCGACGACGACGGCCTTC-ATAATAATC-C-TTC-CCAT-ATCA--AC 597
Query 583 AGCATCAACGGCAATGTGGGTCCCA-CGCGTTCATCCTCCAACACCTCCACGCCGTCCGA 641
| || |||| ||||||||| |||| || | || ||||| ||||| |||||||||| |
Sbjct 598 AACAACAACAACAATGTGGGGCCCACCG-GCTCTTCCTCGAACACATCCACGCCGT-C-- 653
Query 642 TCATAATAGCCTTAGCGACGACGACAACAACAAAGAAGCACCACCGTCCGATCATGATCA 701
| ||||| | | | | ||||| ||||||||||| ||||||| | || |||||
Sbjct 654 -C--AATAG-C--ATC-A--ACGACGACAACAAAGAATTACCACCG---G--CA-GATCA 698
Query 702 TCACATGGACAATAATGTAGCCAATCAAAACAACGCCGCCGGTAACAATTACAACGAATC 761
| ||||| ||||||| | || | ||||| | ||||| | |||| ||
Sbjct 699 TAACATGAACAATAA--T----AA-C--AACAA------C---AACAA-T--AACG-AT- 735
Query 762 AGACGAGGTCCAAAGCCAGTGCAAGACGGAGCCACAAGATGGTCCGTCGGCGAATCAA-A 820
|| | ||||| ||||| ||||||| |||||| | |||||| || || ||||| || |
Sbjct 736 -GA--A-GTCCAGAGCCAATGCAAGATAGAGCCAGAGGATGGTACGGCGTCGAAT-AACA 790
Query 821 ACTCCGGTGGA-AGCTCCGGTAATCGTATTCACGA-CCCTAAAAGGGTAAAAAGAATTTT 878
| ||||| || |||||||| || || |||| ||| ||| |||||||| || ||||| ||
Sbjct 791 ATTCCGG-CGATAGCTCCGGCAACCGGATTCTCGATCCC-AAAAGGGTTAAGAGAATATT 848
Query 879 AGCAAATAGGCAATCAGCACAGAGATCAAGGGTGAGGAAATTGCAATACATATCAGAGCT 938
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 849 AGCAAATCGGCAATCAGCACAGAGATCAAGGGTGAGGAAACTGCAATACATATCAGAGCT 908
Query 939 TGAAAGGAGCGTTACTTCATTGCAGACTGAAGTGTCAGTGTTATCGCCAAGAGTTGCGTT 998
||| | ||||| ||||| |||||| | |||||||||||||||||||||||||| |||||
Sbjct 909 CGAACGTAGCGTCACTTCGTTGCAGGCGGAAGTGTCAGTGTTATCGCCAAGAGTCGCGTT 968
Query 999 TTTGGATCATCAGCGATTGCTTCTCAACGTCGACAATAGTGCTATCAAGCAACGAATCGC 1058
|||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 969 CTTGGATCATCAGCGTTTGCTTCTCAACGTCGACAATAGCGCTCTCAAGCAACGAATCGC 1028
Query 1059 AGCTTTAGCACAAGATAAGATTTTCAAAGACGCTCATCAAGAAGCATTGAAGAGAGAAAT 1118
|||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1029 TGCTTTATCTCAAGACAAGATTTTCAAAGACGCACATCAAGAAGCATTGAAGAGAGAAAT 1088
Query 1119 AGAGAGACTTCGACAAGTATATCATCAACAAAGCCTCAAGAAGATGGAGAAT 1170
|||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct 1089 AGAGAGACTTCGACAAGTGTATAATCAACAAAGCCTCAAGACGATGGAGAAT 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5