BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58130.1
Length=1331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486264 jgi|Araly1|486264|fgenesh2_kg.5__2256__AT3G58130.2 1170 0.0
Ahg900440 jgi|Araly1|900440|Al_scaffold_0004_1090 361 9e-99
> Ahg486264 jgi|Araly1|486264|fgenesh2_kg.5__2256__AT3G58130.2
Length=962
Score = 1170 bits (633), Expect = 0.0
Identities = 779/845 (92%), Gaps = 27/845 (3%)
Strand=Plus/Plus
Query 306 GATGGCATGGCTTGTGGTTTCTGTTTCTCTGATTGTTATATGGTTGGCTTCTTTCTGCAA 365
|||||| ||||||||||||||| |||| ||||||| ||||||| ||||||||||||||||
Sbjct 23 GATGGCTTGGCTTGTGGTTTCTCTTTCACTGATTGCTATATGGGTGGCTTCTTTCTGCAA 82
Query 366 AATATTCTTCCGAGCAACATCTATCTCCGGAGCTGCTATTCTTGATGATGGTAAAACCCC 425
||| ||||||||||||||||||| | || | | | |||||||||
Sbjct 83 AATTTTCTTCCGAGCAACATCTA----C----CT-C----C------A--GTAAAACCCT 121
Query 426 TCAGAAGAAAAATG-TACTGTTTGTTATCGCACATCCTGATGATGAATCGATGTTCTTTT 484
|||||||||||||| || |||| |||||||||||||| |||||||| || ||||||||||
Sbjct 122 TCAGAAGAAAAATGTTA-TGTTCGTTATCGCACATCCCGATGATGAGTCAATGTTCTTTT 180
Query 485 CTCCAACAATAAACTACTTAGCTTCCAATGCTTGCAATCTTCACATGTTATGCTTGTCCA 544
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 181 CTCCAACAATAAATTACTTAGCTTCCAATGCCTGCAATCTTCACATATTATGCTTCTCCA 240
Query 545 CTGGTAACGCTGATGGTATGGGAAGCATTAGGAACA-ATGAGCTGCATCGGGCATGTGCG 603
| |||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||
Sbjct 241 CCGGTAACGCTGATGGTATGGGAAGCATTAGGAA-AGATGAGCTGCATCGAGCATGTGCG 299
Query 604 GTGCTCAAGGTTCCGCTTCAACAGTTAAAGATTCTGAACCATCCTAATTTGCAGGATGGT 663
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 300 GTGCTCAAGGTTCCGCTTCAACAATTAAAGATTCTGGACCATCCTAATTTGCAGGATGGT 359
Query 664 TTTGGCCAATTATGGAGCCACGATTTGCTAACAGAGATCATCGAAGAAGAAGTCACTAAA 723
||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 TTTGGGCAGTTATGGAGCCACGATTTGCTAACAGAGATCATCAAAGAAGAAGTCACTAAT 419
Query 724 CACGATATCCACACAATAATAACATTCGATAACTATGGTGTTTCGGGTCATTGCAATCAC 783
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 CACGATATCCACACAATAATAACATTCGATAACTATGGTGTTTCGGGTCACTGCAATCAC 479
Query 784 CGAGATGTGCATCGTGGAGTATTAAAGTTCTTGCAGACTAATTCAGGAAGAAATGTCAAA 843
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 480 CGAGATGTGCATCGTGGAGTATTAAAGTTCTTGCAGACTAACTCAGGAAGAAATATCAAA 539
Query 844 GCTTGGGAACTCGTAAGCCTTAATATCTTTCGCAAGTACTGTGGACCTGTCGACATTTGG 903
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 540 GCTTGGGAACTCATAAGCCTTAATATCTTTCGCAAGTACTTTGGACCTGTCGACATTTGG 599
Query 904 CTGTCAATTTTATCCGCCAAA-ATACATCCGAGCAAGGTAATCATCATAAACGAGCAGCC 962
|||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 600 CTGTCAATTTTATCTGCCAAACA-ACATCCGAGTAAGGTAATCATCATAAACGAGCAGCC 658
Query 963 TTGGAAAAGCTTCAAAGCAATGGCACAACATTTAAGCCAGTGGGTTTGGTTTCGAAAGCT 1022
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 659 TTGGAAAAGCTTCAAAGCAATGGCACAACATTTAAGCCAGTGGGTTTGGTTTCGGAAGCT 718
Query 1023 TTTTGTTTCGTTTTCAAGCTATACATATGCGAATACACTTAGTAGAATCAACCCTTGAGT 1082
||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 719 TTTTGTTTCGTTTTCGAGCTATACATATGCGAATACACTTAATAGAATCAACGCTTGAGT 778
Query 1083 CAAAGGAGCTCTTGTCGAGGCAAAGCTGAAACGATTTTGAAGAAAAGTTGCAGCTTGTAG 1142
|||| |||||||||| ||||||||||||||||||||||||||||||| || ||||||||
Sbjct 779 CAAACGAGCTCTTGTGGAGGCAAAGCTGAAACGATTTTGAAGAAAAGCTGTAGCTTGTAA 838
Query 1143 TGTTG 1147
|||||
Sbjct 839 TGTTG 843
> Ahg900440 jgi|Araly1|900440|Al_scaffold_0004_1090
Length=225
Score = 361 bits (195), Expect = 9e-99
Identities = 215/225 (96%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 856 GTAAGCCTTAATATCTTTCGCAAGTACTGTGGACCTGTCGACATTTGGCTGTCAATTTTA 915
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTAAGCCTTAATATCTTCCGCAAGTACTGTGGACCTGTCGACATTTGGCTGTCAATTTTA 60
Query 916 TCCGCCAAAATACATCCGAGCAAGGTAATCATCATAAACGAGCAGCCTTGGAAAAGCTTC 975
|||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TCCGGCAAAAAACATCCGAGTAAGGTAATCATCATAAACGAACAGCCTTGGAAAAGCTTC 120
Query 976 AAAGCAATGGCACAACATTTAAGCCAGTGGGTTTGGTTTCGAAAGCTTTTTGTTTCGTTT 1035
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||
Sbjct 121 AAAGCAATGGCACAACATTTAAGCCAGTGGGTTTGGTTTAGGAAGCTTTTTGTTTTGCTT 180
Query 1036 TCAAGCTATACATATGCGAATACACTTAGTAGAATCAACCCTTGA 1080
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TCAAGCTATACATATGCGAATACACTTAATAGAATCAACCCTTGA 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49788529602
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5