BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58140.1
Length=1733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938800 jgi|Araly1|938800|scaffold_502991.1 2065 0.0
> Ahg938800 jgi|Araly1|938800|scaffold_502991.1
Length=1337
Score = 2065 bits (1118), Expect = 0.0
Identities = 1260/1328 (95%), Gaps = 11/1328 (1%)
Strand=Plus/Plus
Query 180 AGACGCTATGACCGTTTTCTCAGTTCAGTCCACTATCTTCAGTCGAGCCTCCGTAGCTCT 239
|||||| |||||| |||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 15 AGACGCCATGACCATTTTCTCAGTTCAGTCCACTATCTTCAGTCGAGCTTCCGTCGTTCT 74
Query 240 TCTCTCGAGCAATGGCTTCAAACGATTTTCATTCGTTTCTTCGTTTTCTTCCTCCGCCGC 299
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 75 TCTCTCAAGCAATGGCTTCAAACGATTTTCATTCGCTTCTTCGTTTTCTTCCTCCGCCGT 134
Query 300 TTACTCTCCA-C-CT----AAAATGAGGAAGCGTCGCTACCCAATCGTCTCTGCTGTTGA 353
||| |||||| | || ||||||| ||||||||| |||||||||||||||||||||||
Sbjct 135 TTATTCTCCACCTCTCCCCAAAATGAAGAAGCGTCGGTACCCAATCGTCTCTGCTGTTGA 194
Query 354 TATTGGTGGCGTCGCAATCGCTAGAAATGATGTGGTGAGAGAGGATGATCCAACAAATAA 413
||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct 195 TATTGGTGGCGTCACAATCTCTAGAAATGATGTGGTGAGAGATGATGATCCAACAAACAA 254
Query 414 TGTACCAGATTCGATTTTCTCTAAACTAGGAATGCAGCTACACAGAAGAGATAAGCATCC 473
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 TGTACCAGACTCGATTTTCTCTAAACTAGGAATGCAGCTACACAGAAGAGATAAGCATCC 314
Query 474 GATTGGTATCTTAAAAAACGCTATCTACGATTACTTTGATTCCAATTACTCAAACAAGTT 533
||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| |||||
Sbjct 315 CATTGGGATCTTAAAAAATGCTATCTACAATTACTTTGATTCCAATTACTCAAAAAAGTT 374
Query 534 TGAGAAGTTCGAAGACCTTTCCCCAATTGTTACCACAAAGCAAAACTTTGATGATGTGCT 593
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 375 TGAGAAGTTCGAAGACCTTTCTCCTATTGTTACCACAAAGCAGAACTTTGATGATGTGCT 434
Query 594 AGTCCCTGCTGATCATGTAAGCAGAAGTCTTAATGACACGTACTATGTAGACTCACAAAC 653
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 435 AGTCCCTGCTGATCATGTAAGCAGAAGCCTTAATGACACGTACTATGTAGACTCGCAAAC 494
Query 654 TGTTTTGAGATGTCATACGAGTGCTCACCAAGCTGAGCTGTTGAGGAAAGGTCATAGTCG 713
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 495 TGTTTTGAGATGCCATACAAGTGCTCACCAAGCTGAGCTGTTGAGGAAAGGTCATACTCG 554
Query 714 TTTCCTTGTAACCGGGGATGTTTACCGAAGAGATTCTATTGACTCTACTCATTATCCGGT 773
||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 555 TTTCCTTGTTACCGGGGATGTTTACCGTAGAGATTCTATCGATTCTACTCATTATCCGGT 614
Query 774 TTTCCATCAGATGGAAGGTTTTTGTGTTTTCTCTCCTGAGGACTGGAACGGGTCTGGCAA 833
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 615 TTTCCATCAGATGGAAGGCTTTTGTGTTTTCTCTCCTGAGGACTGGAACGAGTCTGGCAA 674
Query 834 GGATTCCACTTTGTATGCTGCTGAGGATTTGAAGAAATGTCTTGAGGGATTGGCACGCCA 893
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 675 GGATTCCACTTTGTATGCTGCTGAGGATTTAAAGAAATGTCTTGAGGGATTGGCACGCCA 734
Query 894 CTTATTTGGTTCGGTGGAGATGAGATGGGTTGATACATATTTCCCATTTACCAATCCATC 953
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CTTATTTGGTTCTGTGGAGATGAGATGGGTTGATACATATTTCCCATTTACCAATCCATC 794
Query 954 TTTTGAGCTTGAGATATATTTTAAGGAAGACTGGTTGGAGGTTTTGGGCTGTGGGGTGAC 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TTTTGAGCTTGAGATATATTTTAAGGAAGACTGGTTGGAGGTTTTGGGCTGTGGGGTGAC 854
Query 1014 CGAGCAAGTAATTCTGAAACAAAGTGGATTAGAAAATAATGTTGCTTGGGCCTTCGGACT 1073
||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 855 CGAGCAAGTAATTTTGAAGCAAAGTGGATTAGAAAATAATGTTGCGTGGGCCTTCGGACT 914
Query 1074 TGGACTTGAGAGACTTGCTATGGTTTTGTTTGACATACCTGATATACGATTTTTCTGGTC 1133
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct 915 TGGACTTGAGAGACTTGCTATGGTTTTGTTTGACATCCCTGATATAAGATTTTTCTGGAC 974
Query 1134 ATCCGATGAACGATTCACGTCCCAGTTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCC 1193
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 975 ATCTGATGAGCGATTCACGTCCCAGTTTGGAAAAGGAGAGCTTGGAGTGAAATTCAAGCC 1034
Query 1194 ATATTCAAAGTATCCTCCTTGTTACAAGGACATCAGTTTCTGGATAAGTGATTTGTTCAC 1253
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1035 ATATTCGAAGTATCCTCCTTGTTACAAGGACATCAGTTTCTGGATAAGTGATTCATTCAC 1094
Query 1254 AGAGAATAATTTTTGTGAAGTTGTTAGAGGAATTGCTGGGGATCTTGTTGAAGAGGTGAA 1313
|||||| || ||||||||||| || |||||||||||||| ||||||||||||||| ||||
Sbjct 1095 AGAGAACAACTTTTGTGAAGTAGTCAGAGGAATTGCTGGCGATCTTGTTGAAGAGCTGAA 1154
Query 1314 GTTAATTGACCAATTCACCAATAAGAAGAAAGGGCTGACGAGTCATTGTTACAGAATCGT 1373
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1155 GTTAATTGACCAATTCACCAAT---AAGAAAGGGATGACGAGTCATTGTTACAGAATCGT 1211
Query 1374 GTTCCGTTCCATGGAGCGGTCTCTTACGGACGAGGAGGTCAATGATCTGCAGAGTAAAGT 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 GTTCCGTTCCATGGAGCGGTCTCTTACGGACGAGGAGGTCAATGATCTGCAGAGTAAAGT 1271
Query 1434 GCGTGATGAGGTGCAGAAGAAGCTAAATGTCGAATTAAGGTGAGAATTTTGAAAAGAGTA 1493
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1272 GCGTGATGAGGTGCAGAAGAAGCTAAATGTCGAATTAAGGTGAGAATTTTGAAAAG--TA 1329
Query 1494 GCGTTGTT 1501
| ||||||
Sbjct 1330 GAGTTGTT 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65020048215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5