BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58150.1
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938801 jgi|Araly1|938801|scaffold_502992.1 935 0.0
> Ahg938801 jgi|Araly1|938801|scaffold_502992.1
Length=630
Score = 935 bits (506), Expect = 0.0
Identities = 591/631 (94%), Gaps = 9/631 (1%)
Strand=Plus/Plus
Query 1 GTTCTTTTTCTTCTCTCATGAGCCAGCCGAAGTCTCTAGTTCAGCAGACCATGGTCCTCC 60
|||||| ||||||||||||||||||||| |||||||| || ||||||||||||||||| |
Sbjct 4 GTTCTTCTTCTTCTCTCATGAGCCAGCCCAAGTCTCTGGTGCAGCAGACCATGGTCCTAC 63
Query 61 CGCTTCTGAAGCTAGGAACCCTAGCTCTTCGAACTATCTGCAAACCCATCGCTAACCAG- 119
|||||||||||||||||||||||||||| || |||||||||||||| |||||||| | |
Sbjct 64 CGCTTCTGAAGCTAGGAACCCTAGCTCTACGCACTATCTGCAAACCTATCGCTAATC-GC 122
Query 120 CTTAAGAAAGAAGCTGGTGTTAATCCCAAATTCCGTCAATTCATCATCAACATTGCACAG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CTTAAGAAAGAAGCTGGTGTTAATCCCAAATTCCGTCAATTCATCATCAACATTGCACAG 182
Query 180 GCGAATCACAGATTTACTACAAAGTTACAAAGACGTGCTTCTGGTCGTATAACTGATGCA 239
||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 183 GCGAATCACAGATTTACGACTAAGTTACAAAGACGTGCTTCTGGTCGTGTAACTGATGCA 242
Query 240 GTTATTCGCCCTTTGAACGAAGAGAGAGCTGTTCAAGCCGCTGCAGATCTTCTTGGGGAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GTTATTCGCCCTTTGAACGAAGAGAGAGCTGTTCAAGCCGCTGCAGATCTTCTTGGGGAA 302
Query 300 CTCTTTGCCTTCACGGTTGCAGGAGCTGCTCTTGTCTATGAAGTGCAGAGAAATGCCAGA 359
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 303 CTCTTCGCCTTCACGGTTGCAGGAGCTGCTCTTGTCTATGAGGTGCAGAGAAATGCCAGA 362
Query 360 GGAGAAGCGAAAAAAGAAGAGAAACGACAACAAGAACTAGCGGAATTCAGACGTAAACAT 419
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 363 GGAGAAGCGAAAAAAGAAGAGAAACGACAACAAGAACTAGCTGAATTCAGACGTAAACAT 422
Query 420 GAGAAGATGGAGAACGAAATCGAAGAGATGAAACAAAGATGCTGTTTGCTTCATGAAGAG 479
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 423 GAGAAGATGGAGAACGAAATCGAAGAGATGAAACAAAGATGCTGCCTGCTTCATGAAGAG 482
Query 480 CTTTCTAAGCCGATTAATGAACAGCCTTCTAAGCCTCTTAATGAAGAGGTATCTAAGCCA 539
|||||||||||| ||||| || ||| ||||||||| ||||||| |||||| |||||||||
Sbjct 483 CTTTCTAAGCCGGTTAATAAAGAGCTTTCTAAGCCGCTTAATGCAGAGGTCTCTAAGCCA 542
Query 540 AGAGGATTAGCTTGGCT-TTACAACTACATGTGTTATCAGAATGCTGCTGA-GA-AAA-T 595
| ||||||||||||||| || |||||||||||||| ||||| |||||||| || ||| |
Sbjct 543 ACAGGATTAGCTTGGCTCTT-CAACTACATGTGTTGTCAGAGTGCTGCTGCTGAGAAAGT 601
Query 596 AAAGTAGCAGAGCTTaaaaaaaCAAAAGCCT 626
| ||||||| |||| |||||| ||||||||
Sbjct 602 ACAGTAGCAAAGCT-AAAAAAT-AAAAGCCT 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27105393987
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5