BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58160.1
Length=3729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938803 jgi|Araly1|938803|scaffold_502994.1 6429 0.0
Ahg482115 jgi|Araly1|482115|fgenesh2_kg.4__1175__AT2G31900.1 510 2e-143
> Ahg938803 jgi|Araly1|938803|scaffold_502994.1
Length=3791
Score = 6429 bits (3481), Expect = 0.0
Identities = 3667/3753 (98%), Gaps = 27/3753 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGAAAACATAATGGTGGATTCTCATGTTTGGGTGGAAGACCCAGAAAGAGCATGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCTGAAAACATAATGGTGGATTCTCATGTTTGGGTGGAAGACCCAGAAAGAGCATGG 80
Query 61 ATTGATGGGGTTGTACTTAATATAAAGGGAGAGGAAGCAGAGATTAAAACCAATGATGGC 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 81 ATTGATGGGGTTGTACTTAATATAAAGGGAGACGAAGCAGAGATTAAAACCAATGATGGC 140
Query 121 AGAGATGTTATTGCTAACTTATCAAGACTCTATCCAAAAGACACTGAAGCTCCTTCAGAG 180
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 141 AGAGAGGTTATTGCTAACTTATCAAAACTCTATCCAAAAGACACTGAAGCTCCTTCAGAG 200
Query 181 GGAGTAGAGGACATGACAAGATTATCTTATCTGCATGAGCCTGCAGTTCTTGACAACTTG 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 GGAGTAGAGGACATGACTAGATTATCTTATCTGCATGAGCCTGCAGTTCTTGACAACTTG 260
Query 241 GCAACCAGATACGAGCTCAATGAAATTTATACTTATACAGGAAATATTCTTATTGCCGTC 300
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 261 GCAACCAGATATGAGCTCAATGAAATTTATACTTATACAGGAAACATTCTTATTGCCGTC 320
Query 301 AATCCCTTTCAAGGACTCCCCCATCTCTATGATGCTGAGGTTATGGAGAAGTACAAGGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 321 AATCCCTTTCAAGGACTCCCCCATCTCTATGATGCTGAGGTTATGGAGAAGTATAAGGAA 380
Query 361 GCCTATTTCAAAGAGCTGAATCCTCATGTTTTTGCAATTGGTGGCATCGCATATAGGGAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GCCTATTTCAAAGAGCTGAATCCTCATGTTTTTGCAATTGGTGGCATCGCATATAGGGAA 440
Query 421 ATGATTAATGAGGGCAGGAACAAATGTATATTGGTCAGTGGTGAAAGTGGGTCTGGAAAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 ATGATTAATGAGGGCAGGAACAAATGTATATTGGTCAGTGGTGAAAGTGGGTCTGGAAAG 500
Query 481 ACAGAAACAACTAAAATGCTCATGCGTTACCTTGCATACTTTGGTGGACATACTGCAGTT 540
|||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 501 ACAGAAACAACTAAGATGCTCATGCGTTACCTAGCATACTTTGGTGGACATAGTGCAGTT 560
Query 541 GAAGGAAGGACAGTTGAAAACCAAGTTTTAGAATCAAATCCAGTTCTTGAGGCATTTGGT 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 561 GAAGGAAGGACAGTTGAAAACCAAGTTTTAGAATCAAATCCCGTTCTTGAGGCATTTGGT 620
Query 601 AATGCGAAGACTGTTAAGAACAACAATTCCAGCCGTTTTGGAAAATTTGTGGAGATTCAG 660
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 621 AATGCGAAGACAGTTAAGAACAACAATTCCAGTCGTTTTGGAAAATTTGTGGAGATTCAG 680
Query 661 TTTGATGACGTGGGCCGAATATCAGGGGCAGCCATCAGAACTTACCTTTTGGAGAGGTCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TTTGATGACGTGGGCCGAATATCAGGGGCAGCCATCAGAACTTACCTTTTGGAGAGGTCA 740
Query 721 CGTGTTTGCCAAGTTTCAGATCCTGAACGTAACTATCACTGCTTTTATCTCCTGTGTGCT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CGTGTTTGCCAAGTTTCAGATCCTGAACGTAACTATCACTGCTTTTATCTCCTGTGTGCT 800
Query 781 GCTCCTCCTGAGGATGTTGAGAGGTTTAAGTTGGGGGATCCTAAGTCATTTCGCTATCTT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 GCTCCTCCTGAGGATGTTGAGAGGTTTAAGTTGGGGGATCCTAAGTCATTTCGCTATCTT 860
Query 841 AACCAATCTAGCTGCTACAAACTTGATGGTGTAAATGATGCAGAGGAGTATCTTGCTACT 900
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 861 AACCAATCTAGCTGCTACGAACTTGATGGTGTAAATGATGCAGAGGAGTATCTTGCAACT 920
Query 901 AGAAGGGCTATGGATGTAGTTGGAATAAGTGAAAAAGAACAGGATGCAATTTTCAGAGTT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 AGAAGGGCTATGGATGTAGTTGGAATAAGTGAAAAAGAACAGGATGCAATTTTCAGAGTT 980
Query 961 GTGGCTTCCATTCTCCATCTTGGAAATATTGAATTTTCGAAGGGAGAAGATGCTGATTCA 1020
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 GTGGCTGCCATTCTCCATCTTGGAAATATTGAATTTTCGAAGGGAGAAGATGCTGATTCA 1040
Query 1021 TCATCAGTAAAAGATGAACAGTCAATGTTTCATCTCCAAATGACATCAGAACTGCTCATG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1041 TCATCAGTAAAAGATGAACAGTCAATGTTTCATCTCCAAATGACATCAGAACTACTCATG 1100
Query 1081 TGTGATCCCCATTCCTTAGAAGATGCTTTGTGTAAGCGTATGATGGTCACCCCAGAAGAA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 TGTGATCCCCATTCCTTAGAAGATGCTTTGTGTAAGCGTATGATGGTCACCCCAGAAGAA 1160
Query 1141 GTTATCAAGAGAAGTCTTGATCCTCTTGGTGCTGCCGTTAGCAGGGATGGTTTGGCAAAG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1161 GTTATCAAGAGAAGTCTTGATCCTCTTGGTGCTGCCGTTAGCAGGGATGGTTTAGCAAAG 1220
Query 1201 ACAATATACTCTAGACTCTTTGATTGGTTGGTGAACAAAATAAATATCTCTATTGGGCAA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 ACAATATACTCTAGACTCTTTGATTGGTTGGTGAACAAAATAAATATCTCTATTGGGCAA 1280
Query 1261 GATTCTCACTCTAGGCGCTTGATTGGAGTCCTTGACATCTATGGTTTTGAGAGCTTTAAA 1320
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1281 GATTCTCATTCTAGGCGCTTGATCGGAGTCCTTGACATCTATGGTTTTGAGAGCTTTAAA 1340
Query 1321 ACCAACAGTTTTGAGCAATTCTGTATTAATTACACGAATGAAAAGCTGCAACAGCATTTC 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 ACCAACAGTTTTGAGCAATTCTGTATTAATTACACGAATGAAAAGCTGCAACAGCATTTC 1400
Query 1381 AATCAGCATGTATTCAAAATGGAACAAGGTGAATATCAGAAAGAAGAAATAGATTGGAGC 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 AATCAGCATGTATTCAAAATGGAACAAGGTGAATATCAGAAAGAAGAAATAGATTGGAGC 1460
Query 1441 TATGTGGAGTTTGTTGATAATAAAGATGTCGTGGATCTGATTGAAAAGAAACCGGGTGGT 1500
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1461 TATGTGGAGTTTGTTGATAATCAAGATGTCGTGGATCTGATCGAAAAGAAACCGGGTGGA 1520
Query 1501 ATTATTGCTCTGCTGGATGAAGCATGCATGCTACCAAAATCAACTCCTGAAACATTTTCT 1560
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 ATTATTGCTCTGCTGGACGAAGCATGCATGCTACCAAAATCAACTCCTGAAACATTTTCT 1580
Query 1561 GAGAAGCTGTATCACACATTCAAGGATCATAAGCGCTTCATGAAACCAAAATTGACTCGA 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 GAGAAGCTGTATCACACATTCAAGGATCATAAGCGCTTCATGAAACCAAAATTGACTCGA 1640
Query 1621 TCAGATTTTACATTAGTTCATTATGCAGGGGATGTCCAATACCAGTCCGATCAATTTTTA 1680
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1641 TCAGATTTTACATTAGTTCATTATGCAGGGGATGTTCAATACCAGTCCGATCAATTTTTA 1700
Query 1681 GACAAAAACAAAGACTATGTTGTCGCCGAGCATCAGGATTTGTTAAATGCTTCCAAATGT 1740
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1701 GACAAAAACAAAGACTATGTTGTTGCCGAGCATCAGGATTTGTTAAATGCTTCCAAATGT 1760
Query 1741 TCTTTTGTGTCAGGCCTCTTTCCTCCTCTTCCTAAAGAAAGTAGCAAATCCAAGTTTTCT 1800
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1761 TCTTTTGTGTCAGGCCTTTTTCCTCCTCTTCCTAAAGAGAGTAGCAAATCTAAGTTTTCT 1820
Query 1801 TCAATTGGCGCTCGTTTCAAGCTACAATTGCAACAGCTGATGGAGACATTGAACTCTACG 1860
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1821 TCAATTGGCGCTCGTTTCAAGCTACAATTGCAACAGCTGATGGAGACACTGAACTCGACG 1880
Query 1861 GAACCCCACTACATCAGATGTGTTAAGCCAAACAATTTGTTGCAACCAACAGTGTTTGAC 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 GAACCCCACTACATCAGATGTGTTAAGCCAAACAATTTGTTGCAACCAACAGTGTTTGAC 1940
Query 1921 AATGCCAATGTCTTGCATCAGTTACGCTCTGGGGGTGTTCTTGAGGCCATCAGAGTGAAA 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1941 AATGCCAATGTCTTGCATCAGTTACGCTCTGGGGGTGTTCTTGAGGCCATCAGAGTGAAA 2000
Query 1981 TGCGCTGGATATCCAACAAATAGAACTTTCATTGAATTTTTAAATCGATTTCTCATTCTT 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2001 TGCGCTGGATATCCAACAAATAGAACTTTCATTGAATTTTTAAATCGATTTCTCATTCTT 2060
Query 2041 GCACCGGAAATTCTGAAAGGAGAGTACGAAGCAGAAGTTGCATGCAAATGGATTTTGGAG 2100
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2061 GCACCGGAAATTCTGAAAGGAGAGTACGAAGCAGATGTTGCATGCAAATGGATTTTGGAG 2120
Query 2101 AAAAAAGGGCTTACAGGTTACCAGATTGGAAAAAGTAAGGTTTTCCTGAGAGCTGGTCAG 2160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2121 AAAAAAGGGCTTACAGGTTACCAGATTGGAAAAAGTAAGGTTTTCCTGAGAGCTGGTCAG 2180
Query 2161 ATGGCTGAGTTAGATGCACACAGAACAAGGGTGCTCGGCGAATCAGCGAGGATGATTCAG 2220
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2181 ATGGCTGAGTTAGATGCACACAGAACAAGAGTGCTCGGCGAATCAGCGAGGATGATTCAG 2240
Query 2221 GGGCAAGTTAGAACTCGTCTGACAAGAGAACGATTTGTTCTCATGCGGAGGGCTTCAGTT 2280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2241 GGGCAAGTTAGAACTCGTCTGACAAGAGAACGATTTGTTCTCATGCGGAGGGCTTCAGTT 2300
Query 2281 AATATACAAGCTAATTGGAGAGGAAATATTGCACGAAAGATATCTAAGGAAATGAGAAGG 2340
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2301 AATATACAAGCTAATTGGAGAGGAAATATTGCACGAAAGATATCCAAGGACATGAGAAGG 2360
Query 2341 GAGGAAGCTGCCATCAAAATCCAGAAAAACTTACGTAGACAGATTGCAAAGAAAGATTAC 2400
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 2361 GAGGAAGCTGCCATCAAAATACAGAAAAACTTGCGTAGACAGATTGCAAAGAAAGATTAC 2420
Query 2401 GGGAAGACCAAATCTTCCGCACTCACCTTGCAAAGTGGAGTCCGCACAATGGCTGCACGT 2460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2421 GGGAAGACCAAATCTTCCGCACTCACCTTGCAAAGTGGAGTCCGCACAATGGCTGCACGT 2480
Query 2461 CATGAATTCCGTTATAAATTAACCACTAGGGCAGCAACTGTGATTCAGGCGTATTGGCGT 2520
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2481 CATGAATTCCGTTATAAATTAACGACTAGGGCAGCAACTGTGATTCAGGCGTATTGGCGT 2540
Query 2521 GGTTACAGTGCTATATCTGACTACAAGAAACTGAAAAGAGTTTCTCTTCTTTGTAAAAGT 2580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2541 GGTTACAGTGCTATATCTGACTACAAGAAACTGAAAAGAGTTTCTCTTCTTTGTAAAAGT 2600
Query 2581 AATCTCAGAGGAAGAATTGCCAGAAAACAGTTGGGACAGTCAAAGCAGGCTGACAGAAAA 2640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2601 AATCTCAGAGGAAGAATTGCCAGAAAACAGTTGGGACAGTCAAAGCAGGCTGACAGAAAA 2660
Query 2641 GAAGAGACAGAAAAGGAACGCAAGGTGGAACTTTCCAATAGAGCAGAAGAGGCAGTTGAT 2700
|||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct 2661 GAAGAGACAGAAAATGAAAGAAAGGTGGAACTTTCTAATAGAGCAGAAGAGGCAGTTGAT 2720
Query 2701 ATGTCCTTTGTACTGCATTCAGAGCAAAGTGATGATGCAGAGAGTGGACATGGACGAAAG 2760
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2721 ATGTCCTTTGTACTGCATTCAGAGCAAAGTGATGATTCAGAGAGTGGACATGGACGAAAG 2780
Query 2761 GCAAAACTTTCTATTGAATCAGAAGATGGACTTGATAAGTCCTCTGTATTGCATTCAGAA 2820
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2781 GCAAAACTTTCTATCGAATCAGAAGATGGACTTGATAAGTCCTTTGTATTGCATTCAGAA 2840
Query 2821 CAAAGTGATGATGAAGAGTTGGGACATGAAAGAAAGACAAAACTTTCCATCGAATCAGAA 2880
|||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 2841 CAAAATGATGATGAAGAGATGGGACATGAAAGAAAGACAAAACTTTCCATCAAATCAGAA 2900
Query 2881 GATGG----G------C------A-T---T-CAGATCAGAGTGATGATGAAGAGATAGAA 2919
||||| | | | | | ||||||| |||||||||||||||||||
Sbjct 2901 GATGGAATTGAGAAGTCCTTTGTAATGCATTCAGATCAAAGTGATGATGAAGAGATAGGG 2960
Query 2920 CATGAAAGAAAGACAAAACATTGCATCCAAGCAGAAGATGGAATTGAGAAGTCCTATGTA 2979
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 CATGAAAGAAAGACCAAACATTGCATCCAAGCAGAAGATGGAATTGAGAAGTCCTATGTT 3020
Query 2980 ATGCATTCAGATCAAAGTGATGATGAAGAGATAGGACATAAAAGAAAGACAAAACATTCC 3039
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3021 ATGCATTCAGATCAAAGTGATGATGAAGAGATAGGACATAAAAGAAAGGCAAAACATTCC 3080
Query 3040 ATCCAAGCAGA-AGATGGAATTGAGAAGTCCTTTGTAGTGCATTCAGATCAAAGTGATGA 3098
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3081 ATCCAAGCAGATA-ATGGAATTGAGAAGTCCTTTGTAGTGCATTCAGATCAAAGTGATGA 3139
Query 3099 TGAAGAGATAGGACATGAAAGAAAGACCAAACATGCCATCCAAGTAGAAGATGGAATTCA 3158
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3140 TGAAGAGATAGGACATGAAAGAAAGACCAAACATTCCATCCAAGTAGAAGATGGAATTCA 3199
Query 3159 GAAGTCCTTTGTTACCTG-TTCAGAGAAGCCTTACAACACGTTTTCTGTTGTTAGTCAAA 3217
|||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 3200 GAAGTCCTTTGTTACC-GATTCAGAGAAGCCTTACAACACGTTTTCTGTTGTTAGCCAAA 3258
Query 3218 TAACG-AGTCCTATTCGTGATACAGAAATTGAATCCCTCACTGCAGAAGTTGAGATGCTG 3276
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3259 TAACGGA-TCCTATTCGTGATACAGAAATTGAATCCCTCACTGCAGAAGTTGAGATGCTG 3317
Query 3277 AAGGCCTTATTGCAAGTTGAGAAACAAAGAGCTGACATTTCCGAAAGAAAATGTGCTGAA 3336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3318 AAGGCCTTATTGCAAGTTGAGAAACAAAGAGCTGACATTTCCGAAAGAAAATGTGCTGAA 3377
Query 3337 GCCCGAGAACTTGGGGAGAGAAGACGTAAAAGATTAGAAGAAACAGAAAGAAGAGTTTAC 3396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3378 GCCCGAGAACTTGGGGAGAGAAGACGTAAAAGATTAGAAGAAACAGAAAGAAGAGTTTAC 3437
Query 3397 CAGTTACAAGACTCTTTGAACAGGTTGTTATATTCTATGTCGGACCAATTCTCGCAACTG 3456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3438 CAGTTACAAGACTCTTTGAACAGGTTGTTATATTCTATGTCGGACCAATTCTCGCAACTG 3497
Query 3457 AAGTCCATCTTGAGATCTCCTTCTATGTCAGCTTCAACAATGGCCTCAGCGCCAGTTGTG 3516
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3498 AAGTCCATCTTGAGATCTCCTTCTATGTCAGCTTCAACAATGGCCTCAGCACCAGTTGTG 3557
Query 3517 CGTGATGATCTTGCTGACAGCTCTGAGAACTCTGAAGCTTCATCAAGTGATTCCGATTTC 3576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3558 CGTGATGATCTTGCTGACAGCTCTGAGAACTCTGAAGCTTCATCAAGTGATTCCGATTTC 3617
Query 3577 ACTTTTCCTGCTCCATCTCCTTCCTCAGACAATTTTTCGACTTTTAACCCGAATCAGCTG 3636
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3618 ACTTTTCCTGCTCCATCTCCTTCCACAGACAATTTTTCGACTTTTAACCCGAATCAGCTG 3677
Query 3637 CAAGTCATTGTTCAGGATCTATCAACCACAGAAGCCAAAGGAACTGAGAGCTACGACAGT 3696
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3678 CAAGTCATTGTTCAGGATCTATCGACCACAGAAGCCAAAGGAACTGAGAGCTACGACAGT 3737
Query 3697 GATAAGGAAGGGGGCTTCGAAGATTACTTTTGA 3729
|||||||||||||||||||||||||||||||||
Sbjct 3738 GATAAGGAAGGGGGCTTCGAAGATTACTTTTGA 3770
Score = 409 bits (221), Expect = 9e-113
Identities = 368/433 (85%), Gaps = 33/433 (8%)
Strand=Plus/Plus
Query 2765 AACTTTCT-ATTGAATCAGAAGATGG-ACTTGATAAGTCCTCTGTATTGCATTCAGAACA 2822
|||||||| || | | ||||||| || | |||||| ||||| |||| |||||||||| ||
Sbjct 2689 AACTTTCTAATAG-AGCAGAAGA-GGCAGTTGATATGTCCTTTGTACTGCATTCAGAGCA 2746
Query 2823 AAGTGATGA-TGA-AGAGTTGGGACATGAAAGAAAGACAAAACTTTCCATCGAATCAGAA 2880
||||||||| | | |||| | ||||||| | ||||| |||||||||| ||||||||||||
Sbjct 2747 AAGTGATGATTCAGAGAG-T-GGACATGGACGAAAGGCAAAACTTTCTATCGAATCAGAA 2804
Query 2881 GATGGGC---AT---T-C-----A--G-A-TCAG-----AGTGATGATGAAGAGATAGAA 2919
||||| | || | | | | | |||| | ||||||||||||||| | |
Sbjct 2805 GATGGACTTGATAAGTCCTTTGTATTGCATTCAGAACAAAATGATGATGAAGAGATGGGA 2864
Query 2920 CATGAAAGAAAGACAAAACATTGCATCCAAGCAGAAGATGGAATTGAGAAGTCCTATGTA 2979
||||||||||||||||||| || |||| || |||||||||||||||||||||||| ||||
Sbjct 2865 CATGAAAGAAAGACAAAACTTTCCATCAAATCAGAAGATGGAATTGAGAAGTCCTTTGTA 2924
Query 2980 ATGCATTCAGATCAAAGTGATGATGAAGAGATAGGACATAAAAGAAAGACAAAACATTCC 3039
||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |
Sbjct 2925 ATGCATTCAGATCAAAGTGATGATGAAGAGATAGGGCATGAAAGAAAGACCAAACATTGC 2984
Query 3040 ATCCAAGCAGAAGATGGAATTGAGAAGTCCTTTGT-AGTGCATTCAGATCAAAGTGATGA 3098
||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 2985 ATCCAAGCAGAAGATGGAATTGAGAAGTCCTATGTTA-TGCATTCAGATCAAAGTGATGA 3043
Query 3099 TGAAGAGATAGGACATGAAAGAAAGACCAAACATGCCATCCAAGTAGA-AGATGGAATTC 3157
|||||||||||||||| |||||||| | |||||| ||||||||| ||| | ||||||||
Sbjct 3044 TGAAGAGATAGGACATAAAAGAAAGGCAAAACATTCCATCCAAGCAGATA-ATGGAATTG 3102
Query 3158 AGAAGTCCTTTGT 3170
|||||||||||||
Sbjct 3103 AGAAGTCCTTTGT 3115
Score = 398 bits (215), Expect = 2e-109
Identities = 354/416 (85%), Gaps = 29/416 (7%)
Strand=Plus/Plus
Query 2684 CAGAAGA-GGCAGTTGATATGTCCTTTGTACTGCATTCAGAGCAAAGTGATGATGCAGAG 2742
||||||| || | |||||| |||||||||| |||||||||| |||| |||||||| ||||
Sbjct 2800 CAGAAGATGG-ACTTGATAAGTCCTTTGTATTGCATTCAGAACAAAATGATGATGAAGAG 2858
Query 2743 AGT-GGACATGGACGAAAGGCAAAACTTTCTATTGAATCAGAAGATGGACTTGATAAGTC 2801
| | ||||||| | ||||| |||||||||| || |||||||||||||| |||| |||||
Sbjct 2859 A-TGGGACATGAAAGAAAGACAAAACTTTCCATCAAATCAGAAGATGGAATTGAGAAGTC 2917
Query 2802 CTCTGTATTGCATTCAGAACAAAGTGATGATGAAGAG-TTGGGACATGAAAGAAAGACAA 2860
|| |||| |||||||||| |||||||||||||||||| | ||| |||||||||||||| |
Sbjct 2918 CTTTGTAATGCATTCAGATCAAAGTGATGATGAAGAGATAGGG-CATGAAAGAAAGACCA 2976
Query 2861 AAC-TT---T-C---C-----ATCGAA-TCAGAAG----ATG---GGCATTCAGATCAGA 2899
||| || | | | || ||| | ||||| ||| |||||||||||| |
Sbjct 2977 AACATTGCATCCAAGCAGAAGATGGAATTGAGAAGTCCTATGTTATGCATTCAGATCAAA 3036
Query 2900 GTGATGATGAAGAGATAGAACATGAAAGAAAGACAAAACATTGCATCCAAGCAGA-AGAT 2958
|||||||||||||||||| |||| |||||||| ||||||||| |||||||||||| | ||
Sbjct 3037 GTGATGATGAAGAGATAGGACATAAAAGAAAGGCAAAACATTCCATCCAAGCAGATA-AT 3095
Query 2959 GGAATTGAGAAGTCCTATGTAATGCATTCAGATCAAAGTGATGATGAAGAGATAGGACAT 3018
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3096 GGAATTGAGAAGTCCTTTGTAGTGCATTCAGATCAAAGTGATGATGAAGAGATAGGACAT 3155
Query 3019 AAAAGAAAGACAAAACATTCCATCCAAGCAGAAGATGGAATTGAGAAGTCCTTTGT 3074
|||||||||| |||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 3156 GAAAGAAAGACCAAACATTCCATCCAAGTAGAAGATGGAATTCAGAAGTCCTTTGT 3211
Score = 348 bits (188), Expect = 2e-94
Identities = 257/290 (89%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 2886 GCATTCAGATCAGAGTGATGATGAAGAGA-TAGAACATGAAAGAAAGACAAAACATTGC- 2943
||||||||| || ||||||||| ||||| | | ||||| | ||||| |||||| || |
Sbjct 2735 GCATTCAGAGCAAAGTGATGATTCAGAGAGT-GGACATGGACGAAAGGCAAAAC-TTTCT 2792
Query 2944 ATCCAAGCAGAAGATGGAATTGAGAAGTCCTATGTAATGCATTCAGATCAAAGTGATGAT 3003
||| || ||||||||||| |||| ||||||| |||| |||||||||| |||| |||||||
Sbjct 2793 ATCGAATCAGAAGATGGACTTGATAAGTCCTTTGTATTGCATTCAGAACAAAATGATGAT 2852
Query 3004 GAAGAGATAGGACATAAAAGAAAGACAAAACATTCCATCCAAGCAGAAGATGGAATTGAG 3063
|||||||| |||||| ||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 2853 GAAGAGATGGGACATGAAAGAAAGACAAAACTTTCCATCAAATCAGAAGATGGAATTGAG 2912
Query 3064 AAGTCCTTTGTAGTGCATTCAGATCAAAGTGATGATGAAGAGATAGGACATGAAAGAAAG 3123
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2913 AAGTCCTTTGTAATGCATTCAGATCAAAGTGATGATGAAGAGATAGGGCATGAAAGAAAG 2972
Query 3124 ACCAAACAT-GCCATCCAAGTAGAAGATGGAATTCAGAAGTCCTTTGTTA 3172
||||||||| || ||||||| ||||||||||||| ||||||||| |||||
Sbjct 2973 ACCAAACATTGC-ATCCAAGCAGAAGATGGAATTGAGAAGTCCTATGTTA 3021
> Ahg482115 jgi|Araly1|482115|fgenesh2_kg.4__1175__AT2G31900.1
Length=4674
Score = 510 bits (276), Expect = 2e-143
Identities = 1128/1527 (74%), Gaps = 107/1527 (7%)
Strand=Plus/Plus
Query 421 ATGATTAATGAGGGCAGGAA-CAAATGTATATTGGTCAGTGGTGAAAGTGG-GTCTGGAA 478
||||||||||| |||| ||| | | | ||| ||||| ||||| || || || | ||||||
Sbjct 427 ATGATTAATGA-GGCAAGAAGCCAGTCTATTTTGGTTAGTGGAGAGAGCGGAG-CTGGAA 484
Query 479 AGACAGAAACAACTAAAATGCTCATGCGTTACCTTGCATACTTTGGTGGACATACTGCAG 538
| ||||| ||||| |||||||||||| | || ||||||| | | || || || | | |||
Sbjct 485 AAACAGAGACAACCAAAATGCTCATGAGATATCTTGCATTCATGGGAGG-CAGA-T-CAG 541
Query 539 -T--TGAAGGAAGGA-CAGTTGAA-AACCAAGTTTTAGAATCAAATCCAGTTCTT-GAGG 592
| ||||| || | | |||||| || ||||||||||| || ||||||| | || || |
Sbjct 542 ATACCGAAGGGAGAAGC-GTTGAACAA-CAAGTTTTAGAGTCTAATCCAG-TGTTGGAAG 598
Query 593 CATTTGGTAATGCGAAGACTGTTAAGAACAACAATTCCAGCCGTTTTGGAAAATTTGTGG 652
| ||||| || || || ||||| || ||||||||||| || || |||||||||||||| |
Sbjct 599 CTTTTGGAAACGCCAAAACTGTGAAAAACAACAATTCAAGTCGGTTTGGAAAATTTGTTG 658
Query 653 AGATTCAGTTTGATGA-CGTGGGCCGAATATCAGGGGCAGCCATCAGAACTTACCTT-TT 710
|||| || ||||| | |||||| |||||| || || |||||| | ||||| ||| ||
Sbjct 659 AGATCCAATTTGACAAGCGTGGG-AAAATATCTGGAGCTGCCATCCGCACTTATCTTCTT 717
Query 711 GGAGA-GGTCACGTGTTTGCCAAGTTTCAGATCCTGA-ACGTAACTATCACTGCTTTTAT 768
|| | |||| |||||||||||||||||||| ||||| | | |||||||||||||| ||
Sbjct 718 -GA-ACGGTCTCGTGTTTGCCAAGTTTCAGACCCTGAGA-GGAACTATCACTGCTTCTA- 773
Query 769 C-TCCTGTGTGCTGCTCCTCCTGAGGATGTTGAGAGGTTTAAGTTGGGGGATCCTAA-GT 826
| | || ||||| || || |||||||| | | ||| || ||| | |||||||| || |
Sbjct 774 CATGCTCTGTGCAGCACCGCCTGAGGAAGCTAAGAAATTCAAGGTAGGGGATCC-AAGGA 832
Query 827 CATTTCGCTATCTTAACCA-ATCTAGCTGCTACAAACTTGATGGTGTAAATGATGC-AGA 884
| || | |||||| ||||| | | | |||||| | || |||| ||||||| |||
Sbjct 833 CGTTCCACTATCTAAACCAGA-CGAACTGCTATGAGGTTTCCAATGTAGATGATGCAAGA 891
Query 885 GGAGTATCTTGCTACTAGAAGGGCTATGGATGTAGTTGGAATAAGTGA-AA-AAGAACAG 942
|||||| ||| ||||||| || ||||| | || || || | || || | | ||||
Sbjct 892 -GAGTATATTGAGACTAGAAATGCCATGGACATTGTGGGCAT-TG-GACAAGAGGCACAG 948
Query 943 GATGCAATTTTCAGAGTTGTGGCTTCCATTCTCCATCTTGGAAATATTGAA-TTT-TCGA 1000
||||| || ||| |||| || ||| | || ||||| ||||||||| | || ||| || |
Sbjct 949 GATGCCATATTCCGAGTCGTAGCTGCAATCCTCCACCTTGGAAAT-GTCAATTTTATC-A 1006
Query 1001 AGGGAGAAGATGCTGATTCATCATCAGTAAAAGATGA-ACAGTCAATG-TTTCATCTCCA 1058
| |||||||| || ||||| ||| | | | ||||| | | |||| | | |||||| ||
Sbjct 1007 AAGGAGAAGAAGCAGATTCTTCAAAACTCAGGGATGATA-AATCAA-GATATCATCTTCA 1064
Query 1059 AATGA-CATCAGAACTGCTCATGTGTGATCCCCA-TTCCTTAGAAGATGCTTTGTGTAAG 1116
|| | || ||||| | |||||||| || | | | |||||| | | || |||
Sbjct 1065 AA-CAGCAGCAGAATTACTCATGTGCAATGAGAAGAT-GATGGAAGATTCACTCTGCAAG 1122
Query 1117 CGTATGATGGTCACCCCAGA-AG-AA-GTTATCAAGAGAAGTCTTGATCCTCTTG-GT-- 1170
||| | || ||||| || || | || ||| ||| || | ||||| || | | |
Sbjct 1123 CGTGTTATTGTCACTCCGGATGGTAACATTA-CAA-AGCCG-CTTGA-CC-C-AGAATCA 1176
Query 1171 GCTGCCGT--TAGCAGGGATGGTTTGGCAAAGACAATATACTCTAGACTCTTTGATTGG- 1227
|| ||| | | | | |||| ||| || |||||| ||||||| || || ||||| |||
Sbjct 1177 GCAGCC-TCAAATC-GTGATGCTTTAGCCAAGACAGTATACTCCAGGCTGTTTGACTGGA 1234
Query 1228 TTGGTGAACAAAATAAATA-TCTCTATTGGGCAAGATTCTC-ACT-CTAGGCGCTTGATT 1284
|| ||| | || || || | | || || || ||||| | | | | ||| |||||||
Sbjct 1235 TT-GTGGATAAGATCAACAGT-TCAATAGGTCAAGA--CCCAAATGCTAAAAGCTTGATC 1290
Query 1285 GGAGTCCTTGACATCTATGGTTTTGAGAGCTTTAAAACCAACAGTTTTGAGCAATTCTGT 1344
|||||||| ||||| ||||||||||| ||||| |||| ||||||||||||||| | ||
Sbjct 1291 GGAGTCCTCGACATTTATGGTTTTGAAAGCTTCAAAATCAACAGTTTTGAGCAGCTATGC 1350
Query 1345 ATTAAT-TACACGAATGA-AAAGCTGCAACAGCATTTCAATCAGCATGTATTCAAAATGG 1402
|| ||| | ||| ||||| ||| | ||||||||||||||||||||||||||||| ||||
Sbjct 1351 ATCAATCT-CACAAATGAGAAA-TTACAACAGCATTTCAATCAGCATGTATTCAAGATGG 1408
Query 1403 AACAAG-GTGAATATCA-GAAAGAAGAAATAGATTGGAGCTATGTGGAGTTTGTTGATAA 1460
| |||| | ||||| || || || |||||| | ||||||||||| || |||||||||||
Sbjct 1409 AGCAAGAG-GAATA-CACGAGGGAGGAAATAAACTGGAGCTATGTTGAATTTGTTGATAA 1466
Query 1461 TAAAGATGTCGTGGATCTGATTGAAAAGAAACCGGGTGGTATTATTGCTCTGCTGGATGA 1520
| |||||| | ||||| ||||| |||||||| || || || ||||| || || |||||
Sbjct 1467 CCAGGATGTCTTAGATCTTATTGAGAAGAAACCAGGAGGCATAATTGCCCTACTTGATGA 1526
Query 1521 AGCATGCATGCTACCAAAATCAACTCCTGAAACATTTTCTGAGAAGCTGTATCACACAT- 1579
|||||||||| | || || || |||| ||| || ||| | ||||| ||||||| ||||
Sbjct 1527 AGCATGCATGTTTCCCAAGTCGACTCATGAGACGTTTGCACAGAAGATGTATCAAACATA 1586
Query 1580 TCAAGGATCATAAGCGCTTCATG-AAACCAAAA-TTGACTCGATCAGATTTTACA-TTAG 1636
| ||||| || ||||| |||| | ||||| || ||| | | | ||| || || |||
Sbjct 1587 TAAAGGA-CACAAGCGTTTCA-GCAAACCTAAGCTTGCC-CAAACAGCCTTCACTGTTAA 1643
Query 1637 TTCATTATGCAGGGGATGTC-CA-ATACCAGTCCGATCAATTT-TTAGACAAAAACAAAG 1693
|| |||||||| ||||| | || | || | || |||||| || ||||| ||||| |
Sbjct 1644 C-CACTATGCAGGAGATGTTACGTATTC-AG-CGGAGCAATTTCTT-GACAAGAACAAGG 1699
Query 1694 ACTATGTTGTCGCCGAGCATCAGGATTTGTTAAATGCTTCCAAATGTTCTTTTGT-GTCA 1752
| |||||||| || || ||||| | |||| || |||| || || || |||||||| | ||
Sbjct 1700 ATTATGTTGTGGCAGAACATCAAGCTTTGCTAGATGCATCGAAGTGCTCTTTTGTCGCCA 1759
Query 1753 GGCCTCTTTCCTCCTCTTCCTA-AAGAAAGTAGCAAA----TCCAAGTTTTCTTCAATTG 1807
| ||||| || ||||| | |||| | | |||| ||||| ||||| || || |
Sbjct 1760 ATT-TGTTTCCACCACTTCC-AGAAGAC-GCATCAAAGCAGTCCAAATTTTCATCCATAG 1816
Query 1808 GCG-CTCGTTTCAAGCTACAATTGCAA-CAGCTGATGGAGACATTGAACTCTACGGAACC 1865
| | | |||||||||| |||| | ||| | || |||||||| ||||| | || || ||
Sbjct 1817 G-GACCCGTTTCAAGCAACAACTCCAAGCT-CTAATGGAGACGCTGAACACAACAGAGCC 1874
Query 1866 CCACTACATCAGATGTGTTAAGCCAAA 1892
||| || || |||||||| ||||||||
Sbjct 1875 CCATTATATTAGATGTGTGAAGCCAAA 1901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140889135246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5