BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58170.1
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486269 jgi|Araly1|486269|fgenesh2_kg.5__2261__AT3G58170.1 1061 0.0
> Ahg486269 jgi|Araly1|486269|fgenesh2_kg.5__2261__AT3G58170.1
Length=767
Score = 1061 bits (574), Expect = 0.0
Identities = 729/797 (91%), Gaps = 38/797 (5%)
Strand=Plus/Plus
Query 25 TGTTGATTCGCTTAAGAACGATAAACACAGAGCTTTCTGTTCTTTCGACATATCAACCGT 84
||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct 1 TGTTGATTCGCTTAAGAACGATAAACACAGAGC-TTC---TCTTTCGACAAATCAACCGT 56
Query 85 TTCCTTCCTTAATTTGCGTTCGTTG-TGAAACCATAGATCCAGGTGAATTCTGGAAAACA 143
|||||| || ||||||||||||||| |||||||||||| ||||||| | | ||
Sbjct 57 TTCCTTGCTCAATTTGCGTTCGTTGTTGAAACCATAGACCCAGGTG----GT-G--AA-T 108
Query 144 TCTTGAAGCGAAATCGAGACATCGTTGGAGGATC-AAAACGTTAATTCGATTGATCGATG 202
|| | | | || | ||||| || || | | ||| || |||||||||||||||||
Sbjct 109 TC-T---G-G-AA---A-ACATC-TT-GA--AGCGAAATCG--AATTCGATTGATCGATG 152
Query 203 AATCCTAGAAGGGAGCCTCGTGGTGGTAGAAGTTCTCTCTTTGATGGCATCGAAGAGGGA 262
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 AATCCTAGAAGGGAGCCGCGTGGTGGTAGAAGTTCTCTCTTTGATGGCATCGAAGAGGGA 212
Query 263 GGAATTAGAGCTGCTTCTTCTTACTCTCATGAGATCAATGAACATGAGAATGAGCGTGCC 322
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 213 GGAATTAGAGCTGCTTCTTCTTACTCTCATGAAATCAATGAACATGAGAATGAGCGTGCC 272
Query 323 TTGGAGGGATTGCAAGATAGAGTCATTCTCTTAAAACGACTATCTGGCGATATAAATGAA 382
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TTGGAAGGATTGCAAGATAGAGTCATTCTCTTAAAACGACTATCTGGCGATATAAATGAA 332
Query 383 GAGGTCGATACTCATAACCGCATGCTTGACAGAATGGGCAATGATATGGATTCATCAAGG 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 GAGGTCGATACTCATAACCGCATGCTTGACAGAATGGGCAATGATATGGATTCATCAAGG 392
Query 443 GGATTTCTCTCAGGAACCATGGACCGCTTTAAAACGGTGTTTGAGACAAAGTCAAGCCGA 502
|||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||
Sbjct 393 GGATTTCTCTCAGGAACCATGGACCGGTTTAAAACGGTATTTGAGACTAAGTCAAGTCGA 452
Query 503 AGAATGCTGACGCTCGTGGCATCGTTTGTTGGTTTATTTCTAGTCATATACTATCTTACT 562
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 453 AGAATGCTGACGCTCGTGGCATCGTTCGTTGGTTTATTTCTAGTCATATACTATCTTACT 512
Query 563 CGGTAAAATTGGCAAACCCGGAGTATTCCTGAACATTCATCCATGATCTCATGATATTCC 622
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 513 CGGTAAAATTGGCAAACCCGGAGTATTCCTGAACATCCATCCATGATCTCATGATATTCC 572
Query 623 CAGTCTCTCTCTGTTGGCTCCTACGATCTAATTGTCAC-CAACCAGTGTAATGA-TGTAT 680
||||||||||||||||||||||||||||||||| || | ||| | ||||||||| | |||
Sbjct 573 CAGTCTCTCTCTGTTGGCTCCTACGATCTAATTATC-CTCAATCTGTGTAATGAATATAT 631
Query 681 GCCTCCAGTGTTATA--GTGTGCTCTAGTGCTTGGGATGAGGACACA--TTTCATAAAAC 736
||||||||||||||| || || || ||||||||||||||||||||| |||||||||||
Sbjct 632 GCCTCCAGTGTTATATAGTATGATCCAGTGCTTGGGATGAGGACACAAATTTCATAAAAC 691
Query 737 TTATAAAAAGTTTAATATATTTGGATTTTATAGAGTGTTTTACTTCCTTTATGTATAAAT 796
||||||||||||| |||| || ||||||||||||| ||||||||||||||||||||||||
Sbjct 692 TTATAAAAAGTTTCATATGTT-GGATTTTATAGAGCGTTTTACTTCCTTTATGTATAAAT 750
Query 797 AGCGACTGTTCAAATTT 813
| |||| ||||| ||||
Sbjct 751 AACGACGGTTCAGATTT 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31108300272
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5