BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58180.1
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938805 jgi|Araly1|938805|scaffold_502996.1 1528 0.0
> Ahg938805 jgi|Araly1|938805|scaffold_502996.1
Length=987
Score = 1528 bits (827), Expect = 0.0
Identities = 925/973 (95%), Gaps = 4/973 (0%)
Strand=Plus/Plus
Query 71 CGACGAAGCTGATTTAGTGAATATGGAATCTAATGGATCAGTTTCATCGATGGTTAACTT 130
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 CGACGAAGCTGATTTAGTGAATATGGAATCTAATGGATCAGTTTCATCGACGGTTAACTT 60
Query 131 GGAGAAGTTTCTCTGTGAGCGATTGGTGGACCAGTCACAACCAATCTCGGAGCGATTTAG 190
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 61 GGAGAAGTTTCTCTGCGAGCGATTGGTGGACCAGTCGCAACCGATCTCGGAGCGATTTAG 120
Query 191 AGCTCTCTTCTCTCTTCGCAACTTGAAAGGCCCAGGACCTCGCAACGCTCTAATCCTTGC 250
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 AGCTCTCTTCTCCCTTCGTAACTTGAAAGGCCCAGGACCTCGCAACGCTCTAATCCTCGC 180
Query 251 ATCCAGAGACTCATCTAATTTGTTAGCACATGAAGCTGCATTTGCATTGGGTCAGATGCA 310
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 ATCCAGAGACTCATCTAATTTGTTAGCACATGAAGCTGCTTTTGCATTGGGTCAGATGCA 240
Query 311 AGATGCTGAAGCCATTCCTGCTCTTGAGTCGGTTCTTAATGATATGTCTTTGCATCCAAT 370
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 AGATGCTGAAGCCATTCCTGCTCTTGAGTCCGTTCTTAATGATATGTCTTTGCATCCAAT 300
Query 371 AGTACGACATGAGGCAG-CAGAAGCCCTTGGAGCTATTGGTTTGGCGGGTAATGTTAACA 429
||||||||||| | | ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 301 TGTACGACATGA-GTTGACAGAAGCCCTTGGAGCTATTGGTCTGGCGGGTAATGTTGACA 359
Query 430 TTTTAAAGAAAAGCTTGAGCTCGGATCCAGCTCAGGAGGTTCGGGAAACATGTGAATTAG 489
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 360 TTTTAAAGAAAAGCTTGAGTTCGGATCCAGCTCAAGAGGTACGGGAAACATGTGAATTAG 419
Query 490 CTCTCAAAAGGATTGAAGACATGAGTAACGTTGATGCCGAGAACCAGTCATCAAC-GACA 548
||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | ||
Sbjct 420 CTCTCAAAAGGATTGAAGAGTTGAGTAATGTTGATGCCGAGAACCAGTCATCAACTG-CA 478
Query 549 GAGAAATCACCTTTCATGTCTGTTGACCCAGCAGGCCCAGCTGCGTCTTTCTCTTCTGTT 608
|||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 479 GAGAAATCTCCTTTCATGTCTGTTGACCCAGCAGGGCCAGCTGCTTCTTTCTCTTCTGTC 538
Query 609 CACCAACTCAGGCAAGTTCTCCTGGATGAAACAAAAGGCATGTATGAGAGATATGCTGCA 668
|||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 539 CACCAACTGAGGCAAATTCTTTTGGATGAAACAAAAGGCATGTATGAGAGATATGCTGCA 598
Query 669 CTGTTCGCTCTAAGGAATCATGGTGGAGAGGAAGCTGTTTCTGCCATAGTTGATTCTTTG 728
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 599 CTTTTCGCTCTAAGGAATCATGGCGGAGAGGAAGCTGTTTCCGCCATAGTTGACTCTTTG 658
Query 729 AGTGCTAGTAGTGCCCTTCTACGTCACGAGGTTGCTTATGTCTTGGGTCAGTTGCAAAGT 788
||||||| |||||||||||||||||||||||||||||||||||| || || ||||||| |
Sbjct 659 AGTGCTAATAGTGCCCTTCTACGTCACGAGGTTGCTTATGTCTTAGGCCAATTGCAAAAT 718
Query 789 AAAACTGCTTTAGCTACTCTAAGCAAAGTACTTAGAGATGTGAATGAGCACCCAATGGTT 848
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 719 AAAACCGCTTTAGCTACTCTAAGCAAAGTACTGAGAGATGTGAATGAGCACCCAATGGTT 778
Query 849 AGACATGAGGCTGCAGAAGCGCTTGGTTCTATTGCTGATGAACAGAGCATTGCTTTGCTA 908
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 779 AGACATGAGGCTGCAGAAGCGCTTGGTTCTATTGCAGATGAGCAGAGCATTGCTTTGCTA 838
Query 909 GAAGAATTCTCAAAGGACCCTGAGCCAATTGTTGCACAAAGCTGTGAAGTAGCATTGAGT 968
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GAAGAATTCTCAAGGGACCCTGAGCCAATTGTTGCACAAAGCTGTGAAGTAGCATTGAGT 898
Query 969 ATGTTGGAATTTGAAAATTCCGGGAAATCGTTTGAGttttttttCACGCAAGACCCGCTT 1028
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 899 ATGTTGGAATTTGAAAATTCCGGGAAATCGTTTGAGTTCTTTTTCACACAAGACCCGCTT 958
Query 1029 GTTCACTAAGAAT 1041
|||||||||||||
Sbjct 959 GTTCACTAAGAAT 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46166852487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5