BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58190.1
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486271 jgi|Araly1|486271|fgenesh2_kg.5__2263__AT3G58190.1 1375 0.0
> Ahg486271 jgi|Araly1|486271|fgenesh2_kg.5__2263__AT3G58190.1
Length=904
Score = 1375 bits (744), Expect = 0.0
Identities = 870/926 (94%), Gaps = 28/926 (3%)
Strand=Plus/Plus
Query 19 AAAATTAAATTCGACCTTTAATATCAAGAACCGTCACAACACCATCATCATCATGACTAG 78
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 1 AAAATTAAATTCGACCTTTAAAATCAAGAATCGTCACAACACCATCATCATCATGAGTAG 60
Query 79 TTCCAGCTCTAGCTCTGGCTCTCCTTGTGGTGCTTGTAAGTTCCTTAGGAGGAAATGTGC 138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCCAGCTCTAGCTCTGGCTCTCCTTGTGGTGCTTGTAAGTTCCTTAGGAGGAAATGTGC 120
Query 139 AAAGGGATGTGTGTTTGCTCCATACTTTTGTCATGAACAAGGAGCTTCACACTTTGCAGC 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGGGATGTGTGTTTGCTCCATACTTTTGTCATGAACAAGGAGCTTCACACTTTGCAGC 180
Query 199 CATTCACAAGGTCTTTGGAGCTAGCAATGCTTCTAAGTTGCTCTCTCATCTTCCCATTAG 258
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATCCACAAGGTCTTTGGAGCTAGCAATGCTTCTAAGTTGCTCTCTCATCTTCCCATTAG 240
Query 259 CGATCGCTGTGAAGCCGCTATTACAATCTCTTATGAAGCTCAAGCTAGGCTTCAAGATCC 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGATCGCTGTGAAGCCGCTATTACAATCTCTTATGAAGCTCAAGCTAGGCTTCAAGATCC 300
Query 319 CATCTATGGCTGTGTTTCTCATATCTTTGCTCTCCAACAACAGGTTGTGAATTTACAAGC 378
|||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 301 CATCTATGGCTGCGTTTCTCATATCTTTGCTCTCCAGCAACAGGTTGCGAATTTACAAGC 360
Query 379 AGAACTTGAGATTCTAAAGCAACAAGCAGCACAAAGCATGATTTTTGCTGATTCACCAAC 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAACTTGAGATTCTAAAGCAACAAGCAGCACAAAGCATGATTTTTGCTGATTCACCAAC 420
Query 439 ATCAGAAAACCCTAATAGTTACTATGGAGACACTACTAAGGCTCCTTatcatcatgatca 498
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 ATCAGAAAACCCTAATAGTTACTATGGAGACACTACTAAGGCTCCTTGTCATCATGATCT 480
Query 499 tcaaaatatttatcatcatcatgatcaGACCCATTTGGTTTACCAAACTGGAAGTTCTGG 558
||||||||||||| ||||||| ||||||| |||||||| ||||||||| |||||||| ||
Sbjct 481 TCAAAATATTTATTATCATCAAGATCAGAGCCATTTGGGTTACCAAACCGGAAGTTCAGG 540
Query 559 GACGGTTCAACACGGGGATGCCACAGAGAGTAGTTACCACAACGAAACCTCCTCAGGCAT 618
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 541 GACGGTTCAACACGGGGATGCCACGGAGAGTAGTTACCACAACGAAACCTCCTCAGGCAT 600
Query 619 GGGGGAATTCTCCATCTACTCTGACTTGGAACAACACCTGAACACTTTCAATCAGGATCA 678
|| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 601 CGGAGAATTCTCCATCTACTCTGACTTGGAACAACACTTGAACACTTTCAATCAAGATCA 660
Query 679 TCTCAAAGAGCTTCAATCAGCAAATTTTGGCTACATCTCCTTCTCGTGATATGGTTCTAT 738
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTCAAAGAGCTGCAATCAGCAAGTTTTGGCTACATCTCCTTCTCGTGATATGGTTCTAT 720
Query 739 CAAGAATATGGGTTGATTCTtatctatatccgatctatata-a-tatata--gcttatat 794
||||| ||||||||||||||||| |||||||||||||||| | |||||| ||||||||
Sbjct 721 CAAGAC-ATGGGTTGATTCTTATCAATATCCGATCTATATACAATATATATAGCTTATAT 779
Query 795 ataATGTTTGAAGATTTTTTGATGGTTTTAGTTTCGATTGAAAATGTTCCGTAGCTCAAA 854
||||||||||||||||||| ||||||||||||| | | | | | |||
Sbjct 780 ATAATGTTTGAAGATTTTT-GATGGTTTTAGTT---A--G--------C--T--C--AAA 819
Query 855 GAACCGGAT-TTGTATTTATAAATAAAA-GTAGTAGATGCCCTAGAAATATATAAAGATA 912
||||||| | ||||||| |||||||||| ||| |||||||||||||||||||||||||||
Sbjct 820 GAACCGG-TGTTGTATTCATAAATAAAAAGTACTAGATGCCCTAGAAATATATAAAGATA 878
Query 913 TATATTTACATCCTCAAGATGttttt 938
|||||||||||||||||||| |||||
Sbjct 879 TATATTTACATCCTCAAGATCTTTTT 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35606804478
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5