BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58200.1
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486272 jgi|Araly1|486272|fgenesh2_kg.5__2264__AT3G58200.1 905 0.0
> Ahg486272 jgi|Araly1|486272|fgenesh2_kg.5__2264__AT3G58200.1
Length=988
Score = 905 bits (490), Expect = 0.0
Identities = 579/621 (93%), Gaps = 9/621 (1%)
Strand=Plus/Plus
Query 462 GGGTTTCTGGTGAATGAAGAGGTCAAAATTGTTGTGGAGGTTGATGTTGTTGAAGCTCTT 521
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct 368 GGGTTTCTGGTGAATGATGAGGTCAAAATTGTTGTGGAGGTTGATGTTGTTGAAGTTATT 427
Query 522 GGCAAATTAGAGGAATCTGAAGAGGCAACACAACCTCTGAAAAAGGTAAAGCTAGAGGCT 581
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GGAAAATTAGAGGAATCTGAAGAGGCAACACAACCTCTGAAAAAGGTAAAGCTAGAGGCT 487
Query 582 TTTGTGGAATCGAAAGGTTTGCTTAAGGAAACTTCATCAGTAAAGGAAGAAATCATTGAT 641
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TTTGTGGAATCGAAAGATATGCTTAAGGAAACTTCATCAGTAAAGGAAGAAATCATTGAT 547
Query 642 GTCAATGTGTTTCATGTTCTTCCTTCCCAGGTGGAATTTGTAAGCCGTGTTTTTGAAAGA 701
||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 548 GTCAATGGGTTTCATGTTCTTCCTTCCCAGGTGGAATTTGTTAGCCCTGTTTTTGAAAGA 607
Query 702 TACCCAGAAATTGCATCAATATTCCAAGCAAAGAAGCAACATTTGAGAACAGCATGCATG 761
|||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||
Sbjct 608 TACCCAGAAATTGCATCAGTATTCCAGGCAAAGAAGCAACATTTGAGAACCGCATGCATG 667
Query 762 TATGTCCTCCTAAGTCTTATTGAGACACTGTGCAAGTCACTGGAAGAGCTCTCCAATGAT 821
||||||||||| || || || |||||||||||| |||||||||||||||||| || ||||
Sbjct 668 TATGTCCTCCTCAGCCTAATCGAGACACTGTGCCAGTCACTGGAAGAGCTCTGCAGTGAT 727
Query 822 GATCTTGTGGGAGGAGACAATGCGTTACAATACCTGAAGTTTTCTGGCTTTAAGGTTGAT 881
|||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 728 GATCTTGTGGGAGGTGACAATGCATTACAATACCTGAAATTTTCGGGCTTTAAGGTTGAT 787
Query 882 TGGTTggagaagaagctggaggaagttaaggaaaagaagaaggaagaaCAGATTGGTGAA 941
|||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||
Sbjct 788 TGGTTGGAGAAGAAGCTGGAGGAAATTAAGGTAAAGAAGAAGGAAGAACAAATTGGTGAA 847
Query 942 ACTCGTATGCAAGAAAT-GA--AAGTTTTTAAGC-----A-GAAGTGCTCAGATATAGAA 992
| ||||||||||||| | || ||| || |||| | |||||||||||||||||||
Sbjct 848 AGTCGTATGCAAGAATTAGAGGAAGAATTGAAGCTTTTTAAGAAGTGCTCAGATATAGAA 907
Query 993 GCTCTTATGGAGAGAGAGAAGTCAAAGTTGTTGGTCACCAGAGGTTCTCCTCTAACGTTG 1052
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 908 GCTCTTATGGAGACAGAGAAGACAAAGTTGTTGGTCACCAGAGGTTCTCCTCTAACGTTG 967
Query 1053 GATGATGTTCTTTGAAGACTT 1073
|||||||||||||||||||||
Sbjct 968 GATGATGTTCTTTGAAGACTT 988
Score = 564 bits (305), Expect = 6e-160
Identities = 353/376 (94%), Gaps = 4/376 (1%)
Strand=Plus/Plus
Query 18 TTTGGTTACTATACTTGTGTGCCACTTGGGTTCTAGGGTTCCACGCCATCTGAATGAT-C 76
|||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 1 TTTGCTTACTATATTTGTGTGCCACTTGGGTTCTAGGGTTCCACGCCATCTCAATG-TGC 59
Query 77 TGACTCGTTCGAATTGCAAAGTAGTCTTAGAATGGAGAAAGAAGCTGATAACAAGTTCAG 136
||||| |||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 60 TGACT-GTTC-AATTGCAAAGTAGTCTTAGAATGGGGGAAGAAGCTGATAACAAGTTCAG 117
Query 137 ATGGGTGATTAAAAATTTCTCATCTTTGGGATCCGAGAGAGTCTTTTCTGATATATTCGT 196
||||||||||||| | |||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct 118 ATGGGTGATTAAAGAGCTCTCATCTCTGGGATCCGAGAGAGTCTTTTCTGACATATTTGT 177
Query 197 AGTTGGTTCTTGCAAATGGCGTCTTATGGCCTATCCCAAAGGAGTTAGGGATAATAGATG 256
|| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 178 GGTCGGTTCTTGCAAATGGCGTCTTATGGCCTATCCCAAAGGAGTCAGGGATGATAGATG 237
Query 257 TTTCTCTCTGTTTCTGGTTGTTACTGATTTCAAAACTTTGCCTTGTGACTGGAAACGACA 316
|||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 238 TTTCTCTCTGTTTCTGGTGGTTGCTGATTTCAAAACTTTGCCTTGTGGCTGGAAACGACA 297
Query 317 CACAAGATTGCGCCTAAATGTTGTTAATCAACTCTCGGAAGAACTTTCCATACTGAAAGA 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CACAAGATTGCGCCTAAATGTTGTTAATCAACTCTCGGAAGAACTTTCCATACTGAAAGA 357
Query 377 AACACAAATGTGGTTT 392
|||||||||| |||||
Sbjct 358 AACACAAATGGGGTTT 373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47081802495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5