BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58210.1
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486273 jgi|Araly1|486273|fgenesh2_kg.5__2265__AT3G58210.1 1469 0.0
Ahg324310 jgi|Araly1|324310|fgenesh1_pm.C_scaffold_5001854 385 5e-106
Ahg938811 jgi|Araly1|938811|scaffold_503002.1 283 2e-75
Ahg896922 jgi|Araly1|896922|Al_scaffold_0005_888 134 2e-30
Ahg887442 jgi|Araly1|887442|Al_scaffold_0489_1 128 9e-29
> Ahg486273 jgi|Araly1|486273|fgenesh2_kg.5__2265__AT3G58210.1
Length=1163
Score = 1469 bits (795), Expect = 0.0
Identities = 1076/1204 (89%), Gaps = 49/1204 (4%)
Strand=Plus/Plus
Query 1 ATGGGAAATCTCGTTGATAACAAGTTCACATGGGTGATTCAAAACTTCTCGTCTTCCCAA 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGCAATCTCGTTGATAACAAGTTCACATGGGTGATTCAAAACTTCTCGTCTTCGCAA 60
Query 61 TCAAGGGTCGTCCCTTCTAATCAATTCGTTATTGGTGGCTGCAAGTGGCGTCTTCTTGTC 120
|| || | | | | |||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 61 TCTAGTGCCATTCTTTCTAATCAATTCGTTGTTGGTGGCTGCAAGTGGCATCTTCTTGCC 120
Query 121 TATCCTGAGGGATTCAATAAGTCTGGTGATCATTTGTCGCTGTTTCTGGAAGTGGCTGAT 180
||||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 121 TATCCCGAGGGATTAAATAAGTCTGATGATCATTTCTCGCTGTTTCTGGAAGTGGCTGAT 180
Query 181 CCTAGATCATTGCCACCTGGATGGAGTAGACATGCACGTTATCTTTTAACTATTGTTAAT 240
| || ||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||
Sbjct 181 CATAAATCATTGCCACATGGATGGGGTAGACATGCACGTTATCGCTTAACTACTGTTAAT 240
Query 241 CAACATTCTGATAAAATCTCAAAACGAAACGAAGCAA-CTAAGTGGTTTAATCAAAAGAT 299
|||||||||||||||||||| ||||||| |||||||| | ||||||||| |||||||||
Sbjct 241 CAACATTCTGATAAAATCTCCAAACGAACCGAAGCAAGC-AAGTGGTTTGATCAAAAGAC 299
Query 300 TCCAGGTTGGGGTTTGTCAGCAATGATTCCCCTTACTAAACTTCATGCCAAAGATGGTGG 359
|||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||||||
Sbjct 300 TCCAGGTTGGGGTTTGTCAGGAATGCTTCCCCTTAGTAAACTTCATGCCAAGGATGGTGG 359
Query 360 ATTTCTTGTGAATGATGAACTCAAGATAGTTGCTGAGGTAAATGTTCTTGAAGTTATTGG 419
||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 360 GTTTCTTGTGAACGATGAACTCAAGATTGTTGCTGAGGTCGATGTTATTGAAGTTATTGG 419
Query 420 CAAACTAGATGTA-CCGGAGGAATCTGAAGAGGAAACCCAAGTTACCCAACCTATGAAAA 478
||||||||||||| |||| |||||||||||||| || ||||||||||||||||
Sbjct 420 CAAACTAGATGTATCCGG-GGAATCTGAAGAGG------AA---ACCCAACCTATGAAAA 469
Query 479 AGGTAAAGGTAGATTATGATCATGTGGAGTCTAATGATTTGATGATCAACGAGACTCCAC 538
|| ||||||||||||||||||| | | || || | || | ||||
Sbjct 470 AGATAAAGGTAGATTATGATCA--T---G-----TG----GA-G----AC----C-CCAC 505
Query 539 CGGTTAGTGAACTCATGGACGTCAATGGTTTTCAAGTTCTTCCTTCCCAGGTGGATTTTG 598
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 506 CGGTTAGTGAACTCATGGACGTCAATGGTTTTCAAGTCCTTCCTTCCCAGGTGGCTTTTG 565
Query 599 TGAAGCGTATTTTTGAAAAACATCCAGACATTGCAAAAGATTTCCGTCCAAAGAACCCAC 658
||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 566 TGAAGTGTATTTTTGCAAAACATCCAGACATTGCAAAAGAGTTCCGTCCAAAGAACCCAC 625
Query 659 ATCTGAGGAAAGCATGCATGAATTTCTTGCTCAGCTTAATGGAGACATTGTGCCAACCAC 718
||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| |
Sbjct 626 ATCTGAGGAAAGCATGCATGACTTTCTTGCTCAGCTTGATAGAGACATTGTGCCAACCGC 685
Query 719 CTCAGAAGCTATCAAATGAAGATCTTGTGGAAGCAGACAATGCACTGACATACGTGAAAG 778
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 686 CTCAGAAGCTATCCAATGAAGATCTTGTGGAAGCAAACAATGCACTGACATACGTGAAAG 745
Query 779 TTTCGGGGTTTAAAGTGGATTGGTTGGAGAAAAAGCTAGAGGAAGTGAAGAAAAAGAAGG 838
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 TTTCGGGCTTTAAAGTGGATTGGTTGGAGAAAAAGCTAGAGGAAGTGAAGAAAAAGAAGG 805
Query 839 AGGAAGAACAGACTGGTGAGGCTCGAATTCAAGAACTAGAGGAGGAATTGAAGGAATTTA 898
|||||||||| ||||||| | |||| ||||| ||||||||||||| ||||||||| | ||
Sbjct 806 AGGAAGAACAAACTGGTGTGACTCGGATTCAGGAACTAGAGGAGGGATTGAAGGACTATA 865
Query 899 AGCAGAAGTGCTTAGATAGGGAAGCTATGCTGGAGAAAGAAAAGGCAAAGGTGTTAACAG 958
|||||||||||||| | | |||||||||| |||||||||| ||||||||| |||| | |
Sbjct 866 AGCAGAAGTGCTTAAACATGGAAGCTATGTTGGAGAAAGAGAAGGCAAAGCTGTTGGCCG 925
Query 959 CTAGAGCTCCTCTAACATTGGATGATGTTATTTAATGACTTTTGGCATGTTCTGGTCTTT 1018
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 926 CTAGAGCTTCTCTAACATTGGATGATGTTATTTAATGACTTT-GGCATGTTCTGATGTTT 984
Query 1019 GTTTGTTTGTTTGTTCGTTTGAGTCTATGTTTCGAAATTGGAGTCTTCTTAAAACTTAG- 1077
|||||||||| ||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 985 GTTTGTTTGTGTGTTCGTTTCAGTCTATGTTTCGAAATTGGCTTCCTCTTAAAACTTAGG 1044
Query 1078 ATAGCTAGACAGACCT-ATGTGTCTTCCTTTCTTTTTGTACCTATGG-GA--A-TGACTA 1132
| ||||||| |||| | |||||||||||||| ||||||||||| ||| || | || |||
Sbjct 1045 A-AGCTAGAGAGACTTTATGTGTCTTCCTTTTTTTTTGTACCT-TGGAGAGGAATGGCTA 1102
Query 1133 ATACTGTACAAAGGTTGATGATGCCTTCAATTTCAGCTATCAAATCAATAGGGAAAACCA 1192
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1103 ATACTGTACAAAGGTTGATG---CCTTCATTTTCAGCTATCAAATCAATAGGGAAAACCA 1159
Query 1193 GTTT 1196
||||
Sbjct 1160 GTTT 1163
> Ahg324310 jgi|Araly1|324310|fgenesh1_pm.C_scaffold_5001854
Length=1308
Score = 385 bits (208), Expect = 5e-106
Identities = 420/520 (81%), Gaps = 23/520 (4%)
Strand=Plus/Plus
Query 475 AAAAAGGTAAAG-GTAGATTATGATCATGTGGAGTCTAATGATTTGATGATCAACGAGAC 533
|||||| | ||| | | || ||||| |||| |||||||||| || | | ||||| ||||
Sbjct 793 AAAAAGATTAAGCG-AAATGATGATGGTGTGAAGTCTAATGA-TTCA-G-TCAACAAGAC 848
Query 534 TC--CACCGGTTAGTG-AACTCATGGACGTCAATGGTTTTCAAGTTCTTCCTTCCCAGGT 590
|| || | | || | ||| |||||| ||||||| ||||||||||||||||| |||||
Sbjct 849 TCAACAACTG-AAG-GAAAC-CATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT 905
Query 591 GGATTTTGTGAAG-CGTATTTTTGAAAAACATCCAGACATTGCA-AAAGATTTCCGTCCA 648
| | |||||| || ||||||||||||||| | |||||||||||| | || |||| | ||
Sbjct 906 GAAATTTGTG-AGCCGTATTTTTGAAAAATACCCAGACATTGCAGTAGGA-TTCCATGCA 963
Query 649 AAGAACCCACATCTGAGGAAAGCATGCATGAATTTCTTGCTCAGCTTAATGGAGACATTG 708
||||||| |||||| | || ||||||||||||| || | |||||| |||| |||||| ||
Sbjct 964 AAGAACCAACATCTTAAGACAGCATGCATGAATGTCCTCCTCAGCCTAATCGAGACACTG 1023
Query 709 TGCCAACCACCTCAGAAGCTATCAAATGAAGATCTTGTGGAAGCAGACAATGCACTGACA 768
|| || |||||||| |||| |||||||||||| | ||||||||||||||||| || |||
Sbjct 1024 TGTCAGTCACCTCAGGAGCTCTCAAATGAAGATATGGTGGAAGCAGACAATGCTCTAACA 1083
Query 769 TACGTGAAAGTTTCGGGGTTTAAAGTGGATTGGTTGGAGAAAAAGCTAGAGGAAGTGAAG 828
|| ||||||| | |||| ||||| |||||||||||||||| ||||| |||||||| ||
Sbjct 1084 TATGTGAAAGATGCGGGCTTTAAGGTGGATTGGTTGGAGATGAAGCTGGAGGAAGT-AAA 1142
Query 829 A-AAAAGAAGGAGGAAGAACAGACTGGTGAGGCTCGAATTCAAGAACTAGAGGAGGA-AT 886
| ||||||||| || ||| |||||||||||| |||| |||||||| |||||||||| |
Sbjct 1143 AGAAAAGAAGGTGGTAGAGCAGACTGGTGAGACTCGGATTCAAGAGTTAGAGGAGGACA- 1201
Query 887 TGAAGGAA-TTTAAGCAG-AAGTGCTTAGATAGGGAAGCTATGCTGGAGAAAGAAAAGGC 944
|| ||| ||| | | ||||| | ||| | | ||||| | |||||||| || ||| |
Sbjct 1202 TG-TTGAACATTATG-TGTAAGTGGTCAGACATGAAAGCTGTACTGGAGAAGGAGAAGAC 1259
Query 945 AAAGGTGTTAACAGCTAGAGCTCCTCTAACATTGGATGAT 984
||| ||||| |||||||||||||||||||||||||||||
Sbjct 1260 AAAAGTGTTGGCAGCTAGAGCTCCTCTAACATTGGATGAT 1299
> Ahg938811 jgi|Araly1|938811|scaffold_503002.1
Length=1099
Score = 283 bits (153), Expect = 2e-75
Identities = 537/713 (75%), Gaps = 63/713 (9%)
Strand=Plus/Plus
Query 153 TTTGTCGCTGTTTCTGGAAGTGGCTGATCCTAGATCATTGCCACCTGGATGGAGTAG--A 210
||| || |||| ||| ||||| |||||| || ||| ||||| |||||||| | || |
Sbjct 266 TTTATCTCTGTATCTTGAAGTTGCTGATTTTAAATCCTTGCCTTCTGGATGGCGAAGAAA 325
Query 211 CAT-GCACGTTATCTTTTAACTATTGTTAATCAACATTCTGATAAAATCTCA-AAACGAA 268
| | | | ||| | ||||| | || || ||| || ||| ||| ||||| | ||||
Sbjct 326 CGTAG-AATTTA-C-GATAACTCTAGTAAAACAATTTTGTGAGAAATTCTCACTAGCGAA 382
Query 269 ACG-AAGCAACTA-AGTGGTTTA-ATCAAAAGATTCCAGGTTGGGGTTTGT-CAGCAATG 324
| | || | || | | ||| ||| | || ||| | |||| |||||||| | | | |||
Sbjct 383 A-GTAA-C-ACAACATTGG-TTAGACCACAAGGTACCAGACTGGGGTTT-TAAATCCATG 437
Query 325 ATTCCCCTTACTAAACTTCATGCCAAAGATGGTGGATTTCTTGTGAATGATGAACTCAAG 384
||||||||||| | |||||||| ||| |||||||| ||||||||||| ||||||||||||
Sbjct 438 ATTCCCCTTACCACACTTCATGACAAGGATGGTGGGTTTCTTGTGAACGATGAACTCAAG 497
Query 385 ATAGTTGCTGAGGTAAATGTTCTTGAAGTTATTGGCAAACTAGATGTACC-GGAGGAATC 443
|| ||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 498 ATTGTTGCTGAGGTCGATGTTCTTGAAGTTATTGGCAAACTAGATGTACCCGG-GGAATC 556
Query 444 TGAAGAGGAAACCCAAGTTACCCAACCTATGAAAAAGGTAAAGGTAGATT-ATGATCATG 502
|||||||||||||||| || | |||||||| ||||| ||| | ||||| ||
Sbjct 557 TGAAGAGGAAACCCAA----CC-----TGTGAAAAAGATAAAGC-AGAATGATGATGGTG 606
Query 503 TGGAGTCTAATGATTTGATGATCAACGAGACTCCACCGGTTAGTGAACTCATGGACGTCA 562
|| ||||| |||| || | | || |||| |||| || || | | |||| ||||
Sbjct 607 CGGTGTCTAGTGATCTGCT--T-AAGGAGATTCCA--GG--AG--ATTTGGTGGATGTCA 657
Query 563 ATGGTTTTCAAGTTCTTCCTTCCCAGGTGGATTTTGTGAAGC-GTATTTTTGAAAAACAT 621
|||| ||||||||||||||||| ||||||| |||||||| || ||||||||||||||||
Sbjct 658 ATGGGTTTCAAGTTCTTCCTTCACAGGTGGGTTTTGTGA-GCCGTATTTTTGAAAAACAC 716
Query 622 CCAGACATTGCAAAAGATTTCCGTCCAAAGAACCCACATCTGAGGAA-AGCATGCATGAA 680
||||| | |||| ||| | |||| ||||||||| | ||||||| || | ||| ||||||
Sbjct 717 CCAGAGACTGCATCAGAATGCCGTACAAAGAACCAAGATCTGAG-AACATCATACATGAA 775
Query 681 TTTCTTGC-TCAGCTTAATGGAGACATTGTGCCAACCACCTCAG-AAGCTA-TCAAATGA 737
| || | | | ||| |||| ||| | | | || |||| || || | | || || ||
Sbjct 776 TGTCCT-CATAAGCGTAATCAAGATGCTCTTCAAAGGACCTGAGGAA-C-ACTCCAAGGA 832
Query 738 AGATCT-TGTGGAAGCAGACAA-TGCACTGACATACGTGAAAGTT-TCGGGGTTTAAAGT 794
||||| | || | ||||| | ||| ||| ||||| ||| | | | ||| ||||| ||
Sbjct 833 TGATCTGTCTG-ATGCAGA-AGCTGCTCTGGCATACATGACACATGTAGGG-TTTAA-GT 888
Query 795 -GGATTGGTTGGAGAAA-AAGC-TAGAGGAAGTGAAGAA-AAAGAAGGAGGAA 843
|||||||||||||||| || | | || ||||| || || |||||| || |||
Sbjct 889 TGGATTGGTTGGAGAAACAA-CAT-GAAGAAGT-AA-AAGAAAGAATGAAGAA 937
> Ahg896922 jgi|Araly1|896922|Al_scaffold_0005_888
Length=921
Score = 134 bits (72), Expect = 2e-30
Identities = 246/327 (75%), Gaps = 24/327 (7%)
Strand=Plus/Plus
Query 586 CAGGTGGATTTTGTGAAGCGTATTTTTGAAAAACATCCAGACATTGCAAAAGA-TTTCCG 644
|||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 556 CAGGTGGAATTTGTGAAGCGTATTTTTGAAAAACATCCAGACATTGCATTAGAGTTTTT- 614
Query 645 TCCAAAGAACCCACATCTGAGGAAAGCATGCATGAAT-TTCTTGCTCAGCTTAATGGAGA 703
||| |||||||| | | | || ||| | ||||||| |||| ||||| || || ||||
Sbjct 615 TCCGAAGAACCCGGTTGTCAAGACAGCTTACATGAATGTTCTA-CTCAGTTTGATTGAGA 673
Query 704 CATTGTGCCAACCACCTC-AGAAGCTATCAAATGAAGATCTTG-TGGAAGCAGACAATGC 761
| ||| |||| || |||| |||| ||||||| || ||||| | ||| ||| | |
Sbjct 674 CTTTGGGCCAGCCGCCTCGAGAAA-TATCAAAGGATGATCTGGCTGGT-GCATATGGTTT 731
Query 762 ACTGACATACGTGAAAGTTTCGGGGTTTAAAGT-GGATTGGTTGGAGAA-AAAGCTAGAG 819
||| | || | |||||| | || ||||| || ||||||||||||||| ||| || ||
Sbjct 732 ACTAAGATCCATGAAAGAGGCTGGATTTAA-GTTGGATTGGTTGGAGAATAAA-CT-GAA 788
Query 820 -GAAGTGA-AGAAAAAGAAGGAG-G--AAGAACAGACTGGTGAGGCTCGAATTCAAGAAC 874
|| ||| | |||||||||||| | ||||| | || |||| ||||||| | ||||
Sbjct 789 TGAGGTGTTA-AAAAAGAAGGAGAGCGAAGAA--G-CTTATGAGACTCGAATGCGAGAAA 844
Query 875 TAGAGGAGGA-ATTGAAGGAATTTAAG 900
| ||||| || || ||| || || |||
Sbjct 845 TCGAGGAAGAGAT-GAAAGACTTGAAG 870
> Ahg887442 jgi|Araly1|887442|Al_scaffold_0489_1
Length=363
Score = 128 bits (69), Expect = 9e-29
Identities = 243/324 (75%), Gaps = 24/324 (7%)
Strand=Plus/Plus
Query 589 GTGGATTTTGTGAAGCGTATTTTTGAAAAACATCCAGACATTGCAAAAGA-TTTCCGTCC 647
||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 1 GTGGAATTTGTGAAGCGTATTTTTGAAAAACATCCAGACATTGCATTAGAGTTTTT-TCC 59
Query 648 AAAGAACCCACATCTGAGGAAAGCATGCATGAAT-TTCTTGCTCAGCTTAATGGAGACAT 706
|||||||| | | | || ||| | ||||||| |||| ||||| || || ||||| |
Sbjct 60 GAAGAACCCGGTTGTCAAGACAGCTTACATGAATGTTCTA-CTCAGTTTGATTGAGACTT 118
Query 707 TGTGCCAACCACCTC-AGAAGCTATCAAATGAAGATCTTG-TGGAAGCAGACAATGCACT 764
|| |||| || |||| |||| ||||||| || ||||| | ||| ||| | | |||
Sbjct 119 TGGGCCAGCCGCCTCGAGAAA-TATCAAAGGATGATCTGGCTGGT-GCATATGGTTTACT 176
Query 765 GACATACGTGAAAGTTTCGGGGTTTAAAGT-GGATTGGTTGGAGAA-AAAGCTAGAG-GA 821
| || | |||||| | || ||||| || ||||||||||||||| ||| || || ||
Sbjct 177 AAGATCCATGAAAGAGGCTGGATTTAA-GTTGGATTGGTTGGAGAATAAA-CT-GAATGA 233
Query 822 AGTGA-AGAAAAAGAAGGAG-G--AAGAACAGACTGGTGAGGCTCGAATTCAAGAACTAG 877
||| | |||||||||||| | ||||| | || |||| ||||||| | |||| | |
Sbjct 234 GGTGTTA-AAAAAGAAGGAGAGCGAAGAA--G-CTTATGAGACTCGAATGCGAGAAATCG 289
Query 878 AGGAGGA-ATTGAAGGAATTTAAG 900
|||| || || ||| || || |||
Sbjct 290 AGGAAGAGAT-GAAAGACTTGAAG 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44641935807
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5