BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G58210.1 Length=1196 Score E Sequences producing significant alignments: (Bits) Value Ahg486273 jgi|Araly1|486273|fgenesh2_kg.5__2265__AT3G58210.1 1469 0.0 Ahg324310 jgi|Araly1|324310|fgenesh1_pm.C_scaffold_5001854 385 5e-106 Ahg938811 jgi|Araly1|938811|scaffold_503002.1 283 2e-75 Ahg896922 jgi|Araly1|896922|Al_scaffold_0005_888 134 2e-30 Ahg887442 jgi|Araly1|887442|Al_scaffold_0489_1 128 9e-29 > Ahg486273 jgi|Araly1|486273|fgenesh2_kg.5__2265__AT3G58210.1 Length=1163 Score = 1469 bits (795), Expect = 0.0 Identities = 1076/1204 (89%), Gaps = 49/1204 (4%) Strand=Plus/Plus Query 1 ATGGGAAATCTCGTTGATAACAAGTTCACATGGGTGATTCAAAACTTCTCGTCTTCCCAA 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGGCAATCTCGTTGATAACAAGTTCACATGGGTGATTCAAAACTTCTCGTCTTCGCAA 60 Query 61 TCAAGGGTCGTCCCTTCTAATCAATTCGTTATTGGTGGCTGCAAGTGGCGTCTTCTTGTC 120 || || | | | | |||||||||||||||| |||||||||||||||||| |||||||| | Sbjct 61 TCTAGTGCCATTCTTTCTAATCAATTCGTTGTTGGTGGCTGCAAGTGGCATCTTCTTGCC 120 Query 121 TATCCTGAGGGATTCAATAAGTCTGGTGATCATTTGTCGCTGTTTCTGGAAGTGGCTGAT 180 ||||| |||||||| |||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 121 TATCCCGAGGGATTAAATAAGTCTGATGATCATTTCTCGCTGTTTCTGGAAGTGGCTGAT 180 Query 181 CCTAGATCATTGCCACCTGGATGGAGTAGACATGCACGTTATCTTTTAACTATTGTTAAT 240 | || ||||||||||| ||||||| |||||||||||||||||| ||||||| ||||||| Sbjct 181 CATAAATCATTGCCACATGGATGGGGTAGACATGCACGTTATCGCTTAACTACTGTTAAT 240 Query 241 CAACATTCTGATAAAATCTCAAAACGAAACGAAGCAA-CTAAGTGGTTTAATCAAAAGAT 299 |||||||||||||||||||| ||||||| |||||||| | ||||||||| ||||||||| Sbjct 241 CAACATTCTGATAAAATCTCCAAACGAACCGAAGCAAGC-AAGTGGTTTGATCAAAAGAC 299 Query 300 TCCAGGTTGGGGTTTGTCAGCAATGATTCCCCTTACTAAACTTCATGCCAAAGATGGTGG 359 |||||||||||||||||||| |||| ||||||||| ||||||||||||||| |||||||| Sbjct 300 TCCAGGTTGGGGTTTGTCAGGAATGCTTCCCCTTAGTAAACTTCATGCCAAGGATGGTGG 359 Query 360 ATTTCTTGTGAATGATGAACTCAAGATAGTTGCTGAGGTAAATGTTCTTGAAGTTATTGG 419 ||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||| Sbjct 360 GTTTCTTGTGAACGATGAACTCAAGATTGTTGCTGAGGTCGATGTTATTGAAGTTATTGG 419 Query 420 CAAACTAGATGTA-CCGGAGGAATCTGAAGAGGAAACCCAAGTTACCCAACCTATGAAAA 478 ||||||||||||| |||| |||||||||||||| || |||||||||||||||| Sbjct 420 CAAACTAGATGTATCCGG-GGAATCTGAAGAGG------AA---ACCCAACCTATGAAAA 469 Query 479 AGGTAAAGGTAGATTATGATCATGTGGAGTCTAATGATTTGATGATCAACGAGACTCCAC 538 || ||||||||||||||||||| | | || || | || | |||| Sbjct 470 AGATAAAGGTAGATTATGATCA--T---G-----TG----GA-G----AC----C-CCAC 505 Query 539 CGGTTAGTGAACTCATGGACGTCAATGGTTTTCAAGTTCTTCCTTCCCAGGTGGATTTTG 598 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 506 CGGTTAGTGAACTCATGGACGTCAATGGTTTTCAAGTCCTTCCTTCCCAGGTGGCTTTTG 565 Query 599 TGAAGCGTATTTTTGAAAAACATCCAGACATTGCAAAAGATTTCCGTCCAAAGAACCCAC 658 ||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 566 TGAAGTGTATTTTTGCAAAACATCCAGACATTGCAAAAGAGTTCCGTCCAAAGAACCCAC 625 Query 659 ATCTGAGGAAAGCATGCATGAATTTCTTGCTCAGCTTAATGGAGACATTGTGCCAACCAC 718 ||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| | Sbjct 626 ATCTGAGGAAAGCATGCATGACTTTCTTGCTCAGCTTGATAGAGACATTGTGCCAACCGC 685 Query 719 CTCAGAAGCTATCAAATGAAGATCTTGTGGAAGCAGACAATGCACTGACATACGTGAAAG 778 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 686 CTCAGAAGCTATCCAATGAAGATCTTGTGGAAGCAAACAATGCACTGACATACGTGAAAG 745 Query 779 TTTCGGGGTTTAAAGTGGATTGGTTGGAGAAAAAGCTAGAGGAAGTGAAGAAAAAGAAGG 838 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 746 TTTCGGGCTTTAAAGTGGATTGGTTGGAGAAAAAGCTAGAGGAAGTGAAGAAAAAGAAGG 805 Query 839 AGGAAGAACAGACTGGTGAGGCTCGAATTCAAGAACTAGAGGAGGAATTGAAGGAATTTA 898 |||||||||| ||||||| | |||| ||||| ||||||||||||| ||||||||| | || Sbjct 806 AGGAAGAACAAACTGGTGTGACTCGGATTCAGGAACTAGAGGAGGGATTGAAGGACTATA 865 Query 899 AGCAGAAGTGCTTAGATAGGGAAGCTATGCTGGAGAAAGAAAAGGCAAAGGTGTTAACAG 958 |||||||||||||| | | |||||||||| |||||||||| ||||||||| |||| | | Sbjct 866 AGCAGAAGTGCTTAAACATGGAAGCTATGTTGGAGAAAGAGAAGGCAAAGCTGTTGGCCG 925 Query 959 CTAGAGCTCCTCTAACATTGGATGATGTTATTTAATGACTTTTGGCATGTTCTGGTCTTT 1018 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||| Sbjct 926 CTAGAGCTTCTCTAACATTGGATGATGTTATTTAATGACTTT-GGCATGTTCTGATGTTT 984 Query 1019 GTTTGTTTGTTTGTTCGTTTGAGTCTATGTTTCGAAATTGGAGTCTTCTTAAAACTTAG- 1077 |||||||||| ||||||||| |||||||||||||||||||| || ||||||||||||| Sbjct 985 GTTTGTTTGTGTGTTCGTTTCAGTCTATGTTTCGAAATTGGCTTCCTCTTAAAACTTAGG 1044 Query 1078 ATAGCTAGACAGACCT-ATGTGTCTTCCTTTCTTTTTGTACCTATGG-GA--A-TGACTA 1132 | ||||||| |||| | |||||||||||||| ||||||||||| ||| || | || ||| Sbjct 1045 A-AGCTAGAGAGACTTTATGTGTCTTCCTTTTTTTTTGTACCT-TGGAGAGGAATGGCTA 1102 Query 1133 ATACTGTACAAAGGTTGATGATGCCTTCAATTTCAGCTATCAAATCAATAGGGAAAACCA 1192 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 1103 ATACTGTACAAAGGTTGATG---CCTTCATTTTCAGCTATCAAATCAATAGGGAAAACCA 1159 Query 1193 GTTT 1196 |||| Sbjct 1160 GTTT 1163 > Ahg324310 jgi|Araly1|324310|fgenesh1_pm.C_scaffold_5001854 Length=1308 Score = 385 bits (208), Expect = 5e-106 Identities = 420/520 (81%), Gaps = 23/520 (4%) Strand=Plus/Plus Query 475 AAAAAGGTAAAG-GTAGATTATGATCATGTGGAGTCTAATGATTTGATGATCAACGAGAC 533 |||||| | ||| | | || ||||| |||| |||||||||| || | | ||||| |||| Sbjct 793 AAAAAGATTAAGCG-AAATGATGATGGTGTGAAGTCTAATGA-TTCA-G-TCAACAAGAC 848 Query 534 TC--CACCGGTTAGTG-AACTCATGGACGTCAATGGTTTTCAAGTTCTTCCTTCCCAGGT 590 || || | | || | ||| |||||| ||||||| ||||||||||||||||| ||||| Sbjct 849 TCAACAACTG-AAG-GAAAC-CATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT 905 Query 591 GGATTTTGTGAAG-CGTATTTTTGAAAAACATCCAGACATTGCA-AAAGATTTCCGTCCA 648 | | |||||| || ||||||||||||||| | |||||||||||| | || |||| | || Sbjct 906 GAAATTTGTG-AGCCGTATTTTTGAAAAATACCCAGACATTGCAGTAGGA-TTCCATGCA 963 Query 649 AAGAACCCACATCTGAGGAAAGCATGCATGAATTTCTTGCTCAGCTTAATGGAGACATTG 708 ||||||| |||||| | || ||||||||||||| || | |||||| |||| |||||| || Sbjct 964 AAGAACCAACATCTTAAGACAGCATGCATGAATGTCCTCCTCAGCCTAATCGAGACACTG 1023 Query 709 TGCCAACCACCTCAGAAGCTATCAAATGAAGATCTTGTGGAAGCAGACAATGCACTGACA 768 || || |||||||| |||| |||||||||||| | ||||||||||||||||| || ||| Sbjct 1024 TGTCAGTCACCTCAGGAGCTCTCAAATGAAGATATGGTGGAAGCAGACAATGCTCTAACA 1083 Query 769 TACGTGAAAGTTTCGGGGTTTAAAGTGGATTGGTTGGAGAAAAAGCTAGAGGAAGTGAAG 828 || ||||||| | |||| ||||| |||||||||||||||| ||||| |||||||| || Sbjct 1084 TATGTGAAAGATGCGGGCTTTAAGGTGGATTGGTTGGAGATGAAGCTGGAGGAAGT-AAA 1142 Query 829 A-AAAAGAAGGAGGAAGAACAGACTGGTGAGGCTCGAATTCAAGAACTAGAGGAGGA-AT 886 | ||||||||| || ||| |||||||||||| |||| |||||||| |||||||||| | Sbjct 1143 AGAAAAGAAGGTGGTAGAGCAGACTGGTGAGACTCGGATTCAAGAGTTAGAGGAGGACA- 1201 Query 887 TGAAGGAA-TTTAAGCAG-AAGTGCTTAGATAGGGAAGCTATGCTGGAGAAAGAAAAGGC 944 || ||| ||| | | ||||| | ||| | | ||||| | |||||||| || ||| | Sbjct 1202 TG-TTGAACATTATG-TGTAAGTGGTCAGACATGAAAGCTGTACTGGAGAAGGAGAAGAC 1259 Query 945 AAAGGTGTTAACAGCTAGAGCTCCTCTAACATTGGATGAT 984 ||| ||||| ||||||||||||||||||||||||||||| Sbjct 1260 AAAAGTGTTGGCAGCTAGAGCTCCTCTAACATTGGATGAT 1299 > Ahg938811 jgi|Araly1|938811|scaffold_503002.1 Length=1099 Score = 283 bits (153), Expect = 2e-75 Identities = 537/713 (75%), Gaps = 63/713 (9%) Strand=Plus/Plus Query 153 TTTGTCGCTGTTTCTGGAAGTGGCTGATCCTAGATCATTGCCACCTGGATGGAGTAG--A 210 ||| || |||| ||| ||||| |||||| || ||| ||||| |||||||| | || | Sbjct 266 TTTATCTCTGTATCTTGAAGTTGCTGATTTTAAATCCTTGCCTTCTGGATGGCGAAGAAA 325 Query 211 CAT-GCACGTTATCTTTTAACTATTGTTAATCAACATTCTGATAAAATCTCA-AAACGAA 268 | | | | ||| | ||||| | || || ||| || ||| ||| ||||| | |||| Sbjct 326 CGTAG-AATTTA-C-GATAACTCTAGTAAAACAATTTTGTGAGAAATTCTCACTAGCGAA 382 Query 269 ACG-AAGCAACTA-AGTGGTTTA-ATCAAAAGATTCCAGGTTGGGGTTTGT-CAGCAATG 324 | | || | || | | ||| ||| | || ||| | |||| |||||||| | | | ||| Sbjct 383 A-GTAA-C-ACAACATTGG-TTAGACCACAAGGTACCAGACTGGGGTTT-TAAATCCATG 437 Query 325 ATTCCCCTTACTAAACTTCATGCCAAAGATGGTGGATTTCTTGTGAATGATGAACTCAAG 384 ||||||||||| | |||||||| ||| |||||||| ||||||||||| |||||||||||| Sbjct 438 ATTCCCCTTACCACACTTCATGACAAGGATGGTGGGTTTCTTGTGAACGATGAACTCAAG 497 Query 385 ATAGTTGCTGAGGTAAATGTTCTTGAAGTTATTGGCAAACTAGATGTACC-GGAGGAATC 443 || ||||||||||| |||||||||||||||||||||||||||||||||| || |||||| Sbjct 498 ATTGTTGCTGAGGTCGATGTTCTTGAAGTTATTGGCAAACTAGATGTACCCGG-GGAATC 556 Query 444 TGAAGAGGAAACCCAAGTTACCCAACCTATGAAAAAGGTAAAGGTAGATT-ATGATCATG 502 |||||||||||||||| || | |||||||| ||||| ||| | ||||| || Sbjct 557 TGAAGAGGAAACCCAA----CC-----TGTGAAAAAGATAAAGC-AGAATGATGATGGTG 606 Query 503 TGGAGTCTAATGATTTGATGATCAACGAGACTCCACCGGTTAGTGAACTCATGGACGTCA 562 || ||||| |||| || | | || |||| |||| || || | | |||| |||| Sbjct 607 CGGTGTCTAGTGATCTGCT--T-AAGGAGATTCCA--GG--AG--ATTTGGTGGATGTCA 657 Query 563 ATGGTTTTCAAGTTCTTCCTTCCCAGGTGGATTTTGTGAAGC-GTATTTTTGAAAAACAT 621 |||| ||||||||||||||||| ||||||| |||||||| || |||||||||||||||| Sbjct 658 ATGGGTTTCAAGTTCTTCCTTCACAGGTGGGTTTTGTGA-GCCGTATTTTTGAAAAACAC 716 Query 622 CCAGACATTGCAAAAGATTTCCGTCCAAAGAACCCACATCTGAGGAA-AGCATGCATGAA 680 ||||| | |||| ||| | |||| ||||||||| | ||||||| || | ||| |||||| Sbjct 717 CCAGAGACTGCATCAGAATGCCGTACAAAGAACCAAGATCTGAG-AACATCATACATGAA 775 Query 681 TTTCTTGC-TCAGCTTAATGGAGACATTGTGCCAACCACCTCAG-AAGCTA-TCAAATGA 737 | || | | | ||| |||| ||| | | | || |||| || || | | || || || Sbjct 776 TGTCCT-CATAAGCGTAATCAAGATGCTCTTCAAAGGACCTGAGGAA-C-ACTCCAAGGA 832 Query 738 AGATCT-TGTGGAAGCAGACAA-TGCACTGACATACGTGAAAGTT-TCGGGGTTTAAAGT 794 ||||| | || | ||||| | ||| ||| ||||| ||| | | | ||| ||||| || Sbjct 833 TGATCTGTCTG-ATGCAGA-AGCTGCTCTGGCATACATGACACATGTAGGG-TTTAA-GT 888 Query 795 -GGATTGGTTGGAGAAA-AAGC-TAGAGGAAGTGAAGAA-AAAGAAGGAGGAA 843 |||||||||||||||| || | | || ||||| || || |||||| || ||| Sbjct 889 TGGATTGGTTGGAGAAACAA-CAT-GAAGAAGT-AA-AAGAAAGAATGAAGAA 937 > Ahg896922 jgi|Araly1|896922|Al_scaffold_0005_888 Length=921 Score = 134 bits (72), Expect = 2e-30 Identities = 246/327 (75%), Gaps = 24/327 (7%) Strand=Plus/Plus Query 586 CAGGTGGATTTTGTGAAGCGTATTTTTGAAAAACATCCAGACATTGCAAAAGA-TTTCCG 644 |||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 556 CAGGTGGAATTTGTGAAGCGTATTTTTGAAAAACATCCAGACATTGCATTAGAGTTTTT- 614 Query 645 TCCAAAGAACCCACATCTGAGGAAAGCATGCATGAAT-TTCTTGCTCAGCTTAATGGAGA 703 ||| |||||||| | | | || ||| | ||||||| |||| ||||| || || |||| Sbjct 615 TCCGAAGAACCCGGTTGTCAAGACAGCTTACATGAATGTTCTA-CTCAGTTTGATTGAGA 673 Query 704 CATTGTGCCAACCACCTC-AGAAGCTATCAAATGAAGATCTTG-TGGAAGCAGACAATGC 761 | ||| |||| || |||| |||| ||||||| || ||||| | ||| ||| | | Sbjct 674 CTTTGGGCCAGCCGCCTCGAGAAA-TATCAAAGGATGATCTGGCTGGT-GCATATGGTTT 731 Query 762 ACTGACATACGTGAAAGTTTCGGGGTTTAAAGT-GGATTGGTTGGAGAA-AAAGCTAGAG 819 ||| | || | |||||| | || ||||| || ||||||||||||||| ||| || || Sbjct 732 ACTAAGATCCATGAAAGAGGCTGGATTTAA-GTTGGATTGGTTGGAGAATAAA-CT-GAA 788 Query 820 -GAAGTGA-AGAAAAAGAAGGAG-G--AAGAACAGACTGGTGAGGCTCGAATTCAAGAAC 874 || ||| | |||||||||||| | ||||| | || |||| ||||||| | |||| Sbjct 789 TGAGGTGTTA-AAAAAGAAGGAGAGCGAAGAA--G-CTTATGAGACTCGAATGCGAGAAA 844 Query 875 TAGAGGAGGA-ATTGAAGGAATTTAAG 900 | ||||| || || ||| || || ||| Sbjct 845 TCGAGGAAGAGAT-GAAAGACTTGAAG 870 > Ahg887442 jgi|Araly1|887442|Al_scaffold_0489_1 Length=363 Score = 128 bits (69), Expect = 9e-29 Identities = 243/324 (75%), Gaps = 24/324 (7%) Strand=Plus/Plus Query 589 GTGGATTTTGTGAAGCGTATTTTTGAAAAACATCCAGACATTGCAAAAGA-TTTCCGTCC 647 ||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| ||| Sbjct 1 GTGGAATTTGTGAAGCGTATTTTTGAAAAACATCCAGACATTGCATTAGAGTTTTT-TCC 59 Query 648 AAAGAACCCACATCTGAGGAAAGCATGCATGAAT-TTCTTGCTCAGCTTAATGGAGACAT 706 |||||||| | | | || ||| | ||||||| |||| ||||| || || ||||| | Sbjct 60 GAAGAACCCGGTTGTCAAGACAGCTTACATGAATGTTCTA-CTCAGTTTGATTGAGACTT 118 Query 707 TGTGCCAACCACCTC-AGAAGCTATCAAATGAAGATCTTG-TGGAAGCAGACAATGCACT 764 || |||| || |||| |||| ||||||| || ||||| | ||| ||| | | ||| Sbjct 119 TGGGCCAGCCGCCTCGAGAAA-TATCAAAGGATGATCTGGCTGGT-GCATATGGTTTACT 176 Query 765 GACATACGTGAAAGTTTCGGGGTTTAAAGT-GGATTGGTTGGAGAA-AAAGCTAGAG-GA 821 | || | |||||| | || ||||| || ||||||||||||||| ||| || || || Sbjct 177 AAGATCCATGAAAGAGGCTGGATTTAA-GTTGGATTGGTTGGAGAATAAA-CT-GAATGA 233 Query 822 AGTGA-AGAAAAAGAAGGAG-G--AAGAACAGACTGGTGAGGCTCGAATTCAAGAACTAG 877 ||| | |||||||||||| | ||||| | || |||| ||||||| | |||| | | Sbjct 234 GGTGTTA-AAAAAGAAGGAGAGCGAAGAA--G-CTTATGAGACTCGAATGCGAGAAATCG 289 Query 878 AGGAGGA-ATTGAAGGAATTTAAG 900 |||| || || ||| || || ||| Sbjct 290 AGGAAGAGAT-GAAAGACTTGAAG 312 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44641935807 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5