BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58220.2
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324310 jgi|Araly1|324310|fgenesh1_pm.C_scaffold_5001854 1386 0.0
Ahg486272 jgi|Araly1|486272|fgenesh2_kg.5__2264__AT3G58200.1 279 3e-74
Ahg937123 jgi|Araly1|937123|scaffold_501314.1 254 2e-66
Ahg930958 jgi|Araly1|930958|scaffold_303415.1 252 7e-66
Ahg898788 jgi|Araly1|898788|Al_scaffold_0005_2754 246 3e-64
Ahg924373 jgi|Araly1|924373|scaffold_105654.1 185 7e-46
Ahg938811 jgi|Araly1|938811|scaffold_503002.1 176 4e-43
Ahg913344 jgi|Araly1|913344|Al_scaffold_0001_3598 117 3e-25
Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994 95.3 1e-18
Ahg937127 jgi|Araly1|937127|scaffold_501318.1 71.3 2e-11
Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220 71.3 2e-11
Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1 63.9 4e-09
> Ahg324310 jgi|Araly1|324310|fgenesh1_pm.C_scaffold_5001854
Length=1308
Score = 1386 bits (750), Expect = 0.0
Identities = 1181/1376 (86%), Gaps = 82/1376 (6%)
Strand=Plus/Plus
Query 48 ATGGGGAGAATAGGGAGTCCACTTGGTAAGAACGAGTTCAGTTGGGTAATCAAGGATTTC 107
||||||| |||| |||||||| ||| ||||||| |||||| |||||||||||||||||||
Sbjct 1 ATGGGGATAATACGGAGTCCATTTGATAAGAACAAGTTCACTTGGGTAATCAAGGATTTC 60
Query 108 TCCTCTTTGGGA-GTGAGGGCAATTTATTCTGACGAATTTGTGATCGGTGGCTGCAAATG 166
||||||||| || ||| | ||||||||||| |||||||| ||||||||||||||||
Sbjct 61 TCCTCTTTGCGATCTGA-GATGATTTATTCTGATGAATTTGTTCTCGGTGGCTGCAAATG 119
Query 167 GCGTCTTATAGCCTATCCC-ATGGGAAATAGGATTAAAAAGTATATGTCTTTGTATGTGG 225
||||||||| ||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 120 GCGTCTTATGGCCTATCCCGA-CGGAGATAGGATTAAAAAGTATATGTCTTTGTATGTGG 178
Query 226 AAGTTGCTGATTCTAAACATTTGCCTTCTGGATGGAGTATAAACACAGAATTGCGCATGG 285
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 179 AAGTTGCTGATTCTAAACATTTGCCTTCTGGATGGAGTATACACACAGAATTGCGCATGG 238
Query 286 AAGTTGTAAATCACAATTTGTATAAGCCCTCCCAACAGAAATATAGAAAAAATTTGTGGT 345
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 AAGTAGTAAATCACGATTTGTATAAGCCCTCCCAACAGAAATATAGAAAAAATTTTTGGT 298
Query 346 TTGATCAGAAGACTCCTTCCTGGGGTTATAAAACCATGATTCGTCATTCTAAACTTTCTG 405
||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 299 TTGATAAGAAGACTCCTGCCTGGGGTTATAAAACCATGATTCCACATTCTAAACTTTGTG 358
Query 406 GTGAAGAAGGGTTTTTGGTAAGTGGAGAAGTCACAATTGTAGTCAAGATAGACGTTTATA 465
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 359 GTGAAGAAGGGTTTTTGGTAAATGGAGAAGTCACAATTGTAGTCCAGATAGACGTTTATA 418
Query 466 GAGTTTTTGGCAAAGTAGCTGCAATAGAGATTTCTGAAGAGGGATCTAAAGAGGGATATG 525
||||| |||||||||||||||||||||||| | | ||| ||||||||| |
Sbjct 419 GAGTTATTGGCAAAGTAGCTGCAATAGAGA--T-T---------TCTGAAGAGGGATCT- 465
Query 526 AATATGAATCTGAAGAGGTATATAAAAAGGAATCTGAAGAGGGATATAAATATG-AATCT 584
|| | | | | || |||| || | ||||||||||||| || |||| | | |||||
Sbjct 466 AA-A-G-----G--G-GG-ATATGAATATGAATCTGAAGAGGAATCTAAA-AAGAAATCT 513
Query 585 GAAGA-GGATTACGAAAAGAGACCTATAGAGAGATTTGAATATGAATCTGAAGCGGAATC 643
| ||| ||| | | | | || | | ||| ||||||||||||||||| ||||||
Sbjct 514 GTAGAGGGA-T-C-----TA-A---AT-G-GGGATATGAATATGAATCTGAAGAGGAATC 560
Query 644 TAAAAAGGACTAC-GAAGAGAGAACTAGA-GGGGGATTTGAATATGAATCTGAACCGGTA 701
|||||| || | | | |||| || ||| | ||||||| |||||||||||||||| || |
Sbjct 561 TAAAAACGAAT-CTGTAGAGGGATCTA-ATGGGGGATATGAATATGAATCTGAAGAGGAA 618
Query 702 TCTAAAAAGGATTAC-GAAGAGAGACCTAGA-GAGAGTTTTGAATATGAATCTGAAGCGG 759
||||||||| | | | | |||| || ||| | | | | | ||||||||||||||||| ||
Sbjct 619 TCTAAAAAGAAAT-CTGTAGAGGGATCTAAATG-GGGATATGAATATGAATCTGAAGAGG 676
Query 760 AATCTAAAAAGGATTCCGAAGAGGGATCTAGAGAGAGATATGAATATGAATCTGAAGAGG 819
|||||||||||||||| |||||||||| || | || | | | | | | | |
Sbjct 677 AATCTAAAAAGGATTCTGAAGAGGGATATA-A-AG-G----G---A-G-A--T----ATG 718
Query 820 AATCTAAAAAGGATTCTGAGAA-TGATTGTGGAGAGGAATCTGAAAAGGATTCTGAAGAG 878
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 719 AATCTAAAAAGGATTCTGA-AAGTGATTGTGGAGAGGAATCTGAAAAGGGTTCTGAAGAG 777
Query 879 GGAAGCAGACCTCTTAAAAAGATTAAGAGGAATGATGATGGTGTGAAGTCTAATGATTCA 938
|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 778 GGAAGCAGGCCTCTTAAAAAGATTAAGCGAAATGATGATGGTGTGAAGTCTAATGATTCA 837
Query 939 GTCAACAAGACTCAACAAGTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCT 998
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GTCAACAAGACTCAACAACTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCT 897
Query 999 TCACAGGTGACACTTGTGAGCCGTATTTTaaaaaaaTACCCAGACATTGCATTAGGATTC 1058
|||||||||| | |||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 898 TCACAGGTGAAATTTGTGAGCCGTATTTTTGAAAAATACCCAGACATTGCAGTAGGATTC 957
Query 1059 AATGCAAAGAACCGACATCTGAGGACAGCATGCATGAATGTCCTCATCAGCCTAATCGAG 1118
|||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 958 CATGCAAAGAACCAACATCTTAAGACAGCATGCATGAATGTCCTCCTCAGCCTAATCGAG 1017
Query 1119 ACACTGTGCCAGTCACCACAGGAGCTCTCAGACGAAGATATGGATG-AAGCAGACAATGC 1177
|||||||| |||||||| |||||||||||| | |||||||||| || |||||||||||||
Sbjct 1018 ACACTGTGTCAGTCACCTCAGGAGCTCTCAAATGAAGATATGG-TGGAAGCAGACAATGC 1076
Query 1178 ACTAGTATACGTGCAAGATGCAGGCTTTAAGGTGGATTGGTTGGACAAGAAGCTGAAGGA 1237
||| ||| ||| ||||||| ||||||||||||||||||||||| | ||||||| ||||
Sbjct 1077 TCTAACATATGTGAAAGATGCGGGCTTTAAGGTGGATTGGTTGGAGATGAAGCTGGAGGA 1136
Query 1238 AGTAAAAGAAAAGAAAGTGGTAGAGCAGACTGGTAAGACCCGGATTCAAGAATTAGAGGA 1297
||||||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct 1137 AGTAAAAGAAAAGAAGGTGGTAGAGCAGACTGGTGAGACTCGGATTCAAGAGTTAGAGGA 1196
Query 1298 GGA-AT-T-GAAGGAATTTAAGCAG-AAGTGCTTAGACAGGGAAGCTCTGCTGGAAAAAG 1353
||| || | ||| | || | | | ||||| | ||||| | ||||| | ||||| || |
Sbjct 1197 GGACATGTTGAAC-A-TT-ATGT-GTAAGTGGTCAGACATGAAAGCTGTACTGGAGAAGG 1252
Query 1354 AGAAGGCAAAAGTGTTGGCTGCCCGAGCTTCTCTAACTTTGGATGATTTTGTCTGA 1409
||||| ||||||||||||| || ||||| ||||||| ||||||||||||||||||
Sbjct 1253 AGAAGACAAAAGTGTTGGCAGCTAGAGCTCCTCTAACATTGGATGATTTTGTCTGA 1308
Score = 219 bits (118), Expect = 7e-56
Identities = 242/300 (81%), Gaps = 16/300 (5%)
Strand=Plus/Plus
Query 587 AGAGGATTAC-GAAAAGAGACCTATAGAGAGATTTGAATATGAATCTGAAGCGGAATCTA 645
||| |||| | ||| || || ||| || | ||| ||||||||||||||||| ||||||||
Sbjct 444 AGA-GATTTCTGAAGAGGGATCTAAAGGGGGATATGAATATGAATCTGAAGAGGAATCTA 502
Query 646 AAAAGGACTAC-GAAGAGAGAACTAGAGGGGGATTTGAATATGAATCTGAACCGGTATCT 704
||||| | | | | |||| || ||| | |||||| |||||||||||||||| || ||||
Sbjct 503 AAAAGAAAT-CTGTAGAGGGATCTAAATGGGGATATGAATATGAATCTGAAGAGGAATCT 561
Query 705 AAAAAGGATTAC-GAAGAGAGACCTAGA-GAGAGTTTTGAATATGAATCTGAAGCGGAAT 762
||||| || | | | |||| || ||| | | | | | ||||||||||||||||| |||||
Sbjct 562 AAAAACGAAT-CTGTAGAGGGATCTA-ATGGGGGATATGAATATGAATCTGAAGAGGAAT 619
Query 763 CTAAAAAGGATTCCGAAGAGGGATCTAGA-GAGAGATATGAATATGAATCTGAAGAGGAA 821
|||||||| | || | ||||||||||| | | | ||||||||||||||||||||||||||
Sbjct 620 CTAAAAAGAAATCTGTAGAGGGATCTAAATG-GGGATATGAATATGAATCTGAAGAGGAA 678
Query 822 TCTAAAAAGGATTCTGA-GAATGAT-TGT-GG-AGAG--GAATCTGAAAAGGATTCTGAA 875
||||||||||||||||| || ||| | || ||| |||||| ||||||||||||||
Sbjct 679 TCTAAAAAGGATTCTGAAGAGGGATATAAAGGGAGATATGAATCTAAAAAGGATTCTGAA 738
Score = 163 bits (88), Expect = 3e-39
Identities = 156/188 (83%), Gaps = 7/188 (4%)
Strand=Plus/Plus
Query 657 GAAGAGAGAACTAGAGGGGGATTTGAATATGAATCTGAACCGGTATCTAAAAAGGATTAC 716
|||||| || ||| |||||||| |||||||||||||||| || |||||||||| | | |
Sbjct 454 GAAGAGGGATCTAAAGGGGGATATGAATATGAATCTGAAGAGGAATCTAAAAAGAAAT-C 512
Query 717 -GAAGAGAGACCTAGA-GAGAGTTTTGAATATGAATCTGAAGCGGAATCTAAAAAGGATT 774
| |||| || ||| | | | | | ||||||||||||||||| |||||||||||| || |
Sbjct 513 TGTAGAGGGATCTAAATG-GGGATATGAATATGAATCTGAAGAGGAATCTAAAAACGAAT 571
Query 775 CCGAAGAGGGATCTAGA-GAGAGATATGAATATGAATCTGAAGAGGAATCTAAAAAGGAT 833
| | ||||||||||| | | | ||||||||||||||||||||||||||||||||||| |
Sbjct 572 CTGTAGAGGGATCTA-ATGGGGGATATGAATATGAATCTGAAGAGGAATCTAAAAAGAAA 630
Query 834 TCTG-AGA 840
|||| |||
Sbjct 631 TCTGTAGA 638
Score = 130 bits (70), Expect = 3e-29
Identities = 141/174 (81%), Gaps = 9/174 (5%)
Strand=Plus/Plus
Query 711 GATTAC-GAAGAGAGACCTAGAGAGAGTTTTGAATATGAATCTGAAGCGGAATCTAAAAA 769
|||| | |||||| || ||| || | | | ||||||||||||||||| ||||||||||||
Sbjct 447 GATTTCTGAAGAGGGATCTAAAGGGGGATATGAATATGAATCTGAAGAGGAATCTAAAAA 506
Query 770 GGATTCCGAAGAGGGATCTAGA-GAGAGATATGAATATGAATCTGAAGAGGAATCTAAAA 828
| | || | ||||||||||| | | | |||||||||||||||||||||||||||||||||
Sbjct 507 GAAATCTGTAGAGGGATCTAAATG-GGGATATGAATATGAATCTGAAGAGGAATCTAAAA 565
Query 829 AGGATTCTG-AGAATGAT-TG-TGGAGAGGAATCTGAAAAGGATTCTGAAGAGG 879
| || |||| ||| ||| | ||| | ||| | |||| | || ||||||||||
Sbjct 566 ACGAATCTGTAGAGGGATCTAATGG-G-GGA-TATGAATATGAATCTGAAGAGG 616
Score = 87.9 bits (47), Expect = 2e-16
Identities = 62/69 (90%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 773 TTCCGAAGAGGGATCTAGAGAGAGATATGAATATGAATCTGAAGAGGAATCTAAAAAGGA 832
||| ||||||||||||| || | ||||||||||||||||||||||||||||||||||| |
Sbjct 450 TTCTGAAGAGGGATCTAAAGGGGGATATGAATATGAATCTGAAGAGGAATCTAAAAAGAA 509
Query 833 TTCTG-AGA 840
|||| |||
Sbjct 510 ATCTGTAGA 518
> Ahg486272 jgi|Araly1|486272|fgenesh2_kg.5__2264__AT3G58200.1
Length=988
Score = 279 bits (151), Expect = 3e-74
Identities = 369/472 (78%), Gaps = 24/472 (5%)
Strand=Plus/Plus
Query 955 AAGTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-GACACTT 1013
||| ||| |||| ||| ||| ||||||||||||| ||||||||||| ||||| || | ||
Sbjct 530 AAG-GAA-GAAATCATTGATGTCAATGGGTTTCATGTTCTTCCTTCCCAGGTGGA-ATTT 586
Query 1014 GTGAGCCGTATTTTaaaaaaaTACCCAGACATTGCATTAGGATTCAATGCAAAGAACCGA 1073
|| |||| | |||| ||| ||||||||| ||||||| || |||| | |||||||| | |
Sbjct 587 GTTAGCCCTGTTTTTGAAAGATACCCAGAAATTGCATCAGTATTCCAGGCAAAGAAGCAA 646
Query 1074 CATCTGAGGACAGCATGCATGAATGTCCTCATCAGCCTAATCGAGACACTGTGCCAGTCA 1133
||| |||| || ||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 647 CATTTGAGAACCGCATGCATGTATGTCCTCCTCAGCCTAATCGAGACACTGTGCCAGTCA 706
Query 1134 CCACAGGAGCTCT-CAGACGAAGATATGGATGA-AGCAGACAATGCACTAGTATACGTGC 1191
| | ||||||| ||| || ||| | | || || ||||||||| || |||| ||
Sbjct 707 CTGGAAGAGCTCTGCAGT-GATGATCTTG-TGGGAGGTGACAATGCATTACAATACCTGA 764
Query 1192 AAGATGCAGGCTTTAAGGTGGATTGGTTGGACAAGAAGCTGAAGGAAGTAAAAGAAAAGA 1251
|| | | ||||||||||| ||||||||||| ||||||||| ||||| | || | |||||
Sbjct 765 AATTTTCGGGCTTTAAGGTTGATTGGTTGGAGAAGAAGCTGGAGGAAATTAAGGTAAAGA 824
Query 1252 A-AGTGGTAGAGCAGACTGGT-AAGACCCGGATTCAAGAATTAGAGGAGGAATTGAAGGA 1309
| | || ||| || | |||| || | || || |||||||||||||| |||||||||
Sbjct 825 AGAA-GGAAGAACAAATTGGTGAA-AGTCGTATGCAAGAATTAGAGGAAGAATTGAAGCT 882
Query 1310 ATTTAAGCAGAAGTGCTTAGACAGGGAAGCTCTGCTGGAAAAAGAGAAGGCAAAAGT-GT 1368
|||||| | | ||||| ||| | |||||||| |||| | ||||||| |||| || ||
Sbjct 883 TTTTAAG-A-A-GTGCTCAGATATAGAAGCTCTTATGGAGACAGAGAAGACAAA-GTTGT 938
Query 1369 TGGCTGC-CC-GAGCTTCTC-T--AACTTTGGATGATTTTGTCTGATGACTT 1415
||| | | || ||| ||||| | ||| ||||||||| || | ||| |||||
Sbjct 939 TGG-T-CACCAGAGGTTCTCCTCTAACGTTGGATGATGTTCTTTGAAGACTT 988
> Ahg937123 jgi|Araly1|937123|scaffold_501314.1
Length=1048
Score = 254 bits (137), Expect = 2e-66
Identities = 329/418 (79%), Gaps = 27/418 (6%)
Strand=Plus/Plus
Query 963 GAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTG-ACA-CTTGTGAGCC 1020
|||| ||| ||| |||||||||||||||||||||||||||||| | | | | |||| |
Sbjct 531 GAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGA-ATCC-GTGAAAC 588
Query 1021 GTATTTTaaaaaaaTACCCAGACATTGCATTAG-GATTCAATGCAAAGAACCGACATCTG 1079
|||| || ||| | |||||||||| ||||||| | ||| | | || ||||| |||| ||
Sbjct 589 GTATATTCGAAAGACACCCAGACATGGCATTAGAGTTTCGA-GTAATGAACCAACATATG 647
Query 1080 AGGACAGCATGCATGAATGTCCTCATCAGCCTAATCGAGACACTGTGCCAGTCACC-ACA 1138
|||||| |||||| ||| ||||| ||| | |||||||||| |||||||||||| | |
Sbjct 648 AGGACATTATGCATAAATCTCCTCCTCAACATAATCGAGACTTTGTGCCAGTCACTGAAA 707
Query 1139 GGAGC-TCTC-AGACGAAGATA-TGGATGAAGCAGACAATGCACTA-GTATACGTGCAAG 1194
| | | | || | | | || | ||| ||||||| || |||||| | |||| || |||
Sbjct 708 G-A-CATTTCCATTC-ATGA-ACTGGGCCAAGCAGAGAAAGCACTAAG-ATACCTGAAAG 762
Query 1195 ATGCAGG-CTTTAAGGTGGATTGGTTGGA-CA-AGAAGCTGAAGGAAGTAAAAGAAAAGA 1251
|| | || |||||||||||||||||| || || | || ||| |||||||||| |||||||
Sbjct 763 ATTC-GGACTTTAAGGTGGATTGGTTAGAGCATA-AA-CTGGAGGAAGTAAAGGAAAAGA 819
Query 1252 A-AGTGGTAGAGCAGACTGGTAAGACCCGGATTCAAGAATTAGAGGAGGAATTGAAGGAA 1310
| | ||| |||||||| ||||||| | ||||| |||||||||||||| ||| ||||||
Sbjct 820 AGA-TGGAAGAGCAGATTGGTAAGTCTCGGATGCAAGAATTAGAGGAAGAACTGAAGGTC 878
Query 1311 TTTAAGCAGAAGTGCT-TAGACAGGGAAGCTCTGCTGGAAAAAGAGAAGGCAAAAGTG 1367
|| |||||||| |||| | |||| ||||||| ||||| ||||| ||| ||||||||
Sbjct 879 TTCAAGCAGAATTGCTCT-GACATAGAAGCTCAACTGGAGAAAGAAAAG-CAAAAGTG 934
> Ahg930958 jgi|Araly1|930958|scaffold_303415.1
Length=959
Score = 252 bits (136), Expect = 7e-66
Identities = 314/398 (79%), Gaps = 20/398 (5%)
Strand=Plus/Plus
Query 972 GATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTG-ACA-CTTGTGAGCCGTATTTTaa 1029
||| |||||||||||||||||||||||||||||| | | | || |||| ||||| ||
Sbjct 418 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGA-ATCT-GTGAAACGTATATTCG 475
Query 1030 aaaaaTACCCAGACATTGCATTAGGATTCA-ATGCAAAGAACCGACATCTGAGGACAGCA 1088
||||| |||||||||| ||| || |||| | |||||||||| |||| ||| |||| ||
Sbjct 476 AAAAACACCCAGACATGGCACTAAAATTCCGA-GCAAAGAACCAACATTTGAAGACATCA 534
Query 1089 TGCATGAATGTCCTCATCAGCCTAATCGAGACACTGTGCCAGTCACCACAGGAGCTCTC- 1147
||||| ||||||||| ||||| ||||| |||| |||||||||||| || || || ||
Sbjct 535 TGCATAAATGTCCTCCTCAGCTTAATCAAGACGTTGTGCCAGTCACTGCAAGACCTTTCC 594
Query 1148 AGACGAAGATATGGATGAAGCAGA-CAATGCACTAGTATA-CGTGCAAGA-TGCAGGCTT 1204
| || || ||| ||||||| ||| |||||| ||| | || || | | |||||
Sbjct 595 ATT-GATGACCTGGGCCAAGCAGAGCAA-GCACTAACATATC-TG-AATAATTTGGGCTT 650
Query 1205 TAAGGTGGATTGGTTGGACAAG-AAGCTGAAGGAAGTAAAAGAAAAGAAAG-TGGTAGAG 1262
|||||||||||||||||| | || ||| |||||||||| | ||| |||| ||| ||||
Sbjct 651 TAAGGTGGATTGGTTGGAGT-GTAAACTGGAGGAAGTAAAGGCAAA-AAAGATGGAAGAG 708
Query 1263 CAGACTGGTAAGACCCGGATTCAAGAATTAGAGGAGGAATTGAAGGAATTTAAGCAGAAG 1322
|||| ||||||||| ||||| |||||||||||| | || ||||| |||||| |||||
Sbjct 709 CAGATTGGTAAGACTCGGATGCAAGAATTAGAGAAAGACCTGAAGCTCTTTAAGAAGAAG 768
Query 1323 TGCT-TAGACAGGGAAGCTCTGCTGGAAAAAGAGAAGG 1359
|||| | |||| |||||| ||||||| ||||||||||
Sbjct 769 TGCTCT-GACATAGAAGCTTTGCTGGAGAAAGAGAAGG 805
> Ahg898788 jgi|Araly1|898788|Al_scaffold_0005_2754
Length=918
Score = 246 bits (133), Expect = 3e-64
Identities = 252/309 (82%), Gaps = 10/309 (3%)
Strand=Plus/Plus
Query 949 CTCAACAAGTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-G 1007
|||||||||||||||||| ||| | | | ||||||||||||||||||||||||||||| |
Sbjct 479 CTCAACAAGTGAAGGAAAGCATTGTTGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAG 538
Query 1008 ACA-CTTGTGAGCCGTATTTTaaaaaaaTACCCAGACATTGCATTAGGATTC-AATGCAA 1065
| | || |||||||||||||| |||| ||||||| |||||| |||| ||| || | ||
Sbjct 539 A-ATCT-GTGAGCCGTATTTTTGAAAAGCACCCAGAGATTGCAGTAGGGTTCCAA-GTAA 595
Query 1066 AGAACCGACATCTGAGGACAGCATGCATGAATGTCCTCATCAGCCTAATCGAGACACTGT 1125
|||||| ||||||||||| | ||| ||||||| |||| ||| | |||| ||||| ||||
Sbjct 596 AGAACCAACATCTGAGGAAAACATTCATGAATTTCCTGGTCAACGTAATTGAGACGCTGT 655
Query 1126 GCCAGTCACCACAGGAGCTCTCAGACGAAGATATGGATG-AAGCAGACAATGCACT-AGT 1183
| || || | |||||||||||| | |||||| | | || ||| ||||| |||||| |
Sbjct 656 GTCAATCTCTTCAGGAGCTCTCAAATGAAGATCTTG-TGGAAGTAGACATTGCACTGAC- 713
Query 1184 ATACGTGCAAGATGCAGGCTTTAAGGTGGATTGGTTGGACAAGAAGCTGAAGGAAGTAAA 1243
||| || ||||||| || ||||||||||||||||| || ||||||||| | |||| ||
Sbjct 714 ATATTTGAAAGATGCGGGATTTAAGGTGGATTGGTTAGAGAAGAAGCTGGACCAAGTGAA 773
Query 1244 AGAAAAGAA 1252
|||||||||
Sbjct 774 AGAAAAGAA 782
> Ahg924373 jgi|Araly1|924373|scaffold_105654.1
Length=1003
Score = 185 bits (100), Expect = 7e-46
Identities = 304/398 (76%), Gaps = 31/398 (8%)
Strand=Plus/Plus
Query 870 TCTGAAGAGGGAAGCAGACCTCTTAAAAAGATTAAGAGGAATGATGATGGTGTGAAGTCT 929
||| ||||| |||| | ||||| |||||||| ||| ||||| ||| ||| | |||||
Sbjct 465 TCTAAAGAGTCAAGCCGCCCTCTGAAAAAGATAAAGCTAAATGAGGATTGTGCGGAGTCT 524
Query 930 AATGATTCAG-TCAA-CAAGAC-TCAACAAGTGAAGGAAACCATGGATATCAATGGGTTT 986
||||| || | |||| ||| | ||| | ||| || |||| ||||| | | |||||||||
Sbjct 525 AATGAGTC-GATCAAGGAAG-CTTCATC-AGTAAAAGAAAGCATGG-T-T-AATGGGTTT 578
Query 987 CAAGTTCTTCCTTCACAGGT-GACA-CTTGTGAGCCGTAT-TTTaaaaaa-aTACCCAGA 1042
||||||||||||||||||| || | || ||||| ||||| ||| ||| | || || |||
Sbjct 579 CAAGTTCTTCCTTCACAGGAAGA-ATCT-GTGAGACGTATATTTGAAAGACAT-CC-AGA 634
Query 1043 CATTGCATTAGGA-TTCAATGCAAAGAACCGACATCTGAGGACAGCATGCATGAATGTCC 1101
||||| ||| | ||| ||||||||||| ||| || |||||| |||| |||||| ||
Sbjct 635 CATTGTGGTAG-ACTTCCGTGCAAAGAACCAACAGCTCAGGACAACATGGATGAATTTCT 693
Query 1102 T-CATCAGCCTAATCGAGACACTGTGCCAGTCACCACAGGAGCTCTC-AGACGAAGATAT 1159
| | ||||| | |||||||| |||||| ||||| |||||||| || | | || ||| |
Sbjct 694 TGC-TCAGCTTGATCGAGACGCTGTGCAAGTCAATTCAGGAGCTTTCCA-ATGACGATCT 751
Query 1160 GGATGAA-GCAGACAATGCACT-AGTATACGTGCAAGATGC-AGGCTTTAAGGTGGATTG 1216
| || | ||||||| ||| || | | || || ||| || | ||||||||| |||||
Sbjct 752 TG-TGGATGCAGACATTGCGCTGAC-ACACTTGAAAGCTGTGAA-CTTTAAGGTAGATTG 808
Query 1217 GTTGGACAAGAAGCT-GAAGGAAGTAAAAGAAAAGAAA 1253
| |||| |||||||| || |||||||||||||||||
Sbjct 809 GCTGGAAAAGAAGCTTGATC-AAGTAAAAGAAAAGAAA 845
> Ahg938811 jgi|Araly1|938811|scaffold_503002.1
Length=1099
Score = 176 bits (95), Expect = 4e-43
Identities = 300/396 (76%), Gaps = 25/396 (6%)
Strand=Plus/Plus
Query 866 GGATTCTGAAGAGGGAA-GCAGACCTCTTAAAAAGATTAAG-AGGAATGATGATGGTGTG 923
||| |||||||||| || || |||| | |||||||| ||| | |||||||||||||| |
Sbjct 551 GGAATCTGAAGAGGAAACCCA-ACCTGTGAAAAAGATAAAGCA-GAATGATGATGGTGCG 608
Query 924 AAGTCTAATGATTCAG-TCAACAAGACTCAACAAGTGAAGGAAACCATGGATATCAATGG 982
||||| ||| || | | || ||| || | || | | || ||||| |||||||
Sbjct 609 GTGTCTAGTGA-TCTGCTTAAGGAGATTC--C-AG-G-A-GATTTGGTGGATGTCAATGG 661
Query 983 GTTTCAAGTTCTTCCTTCACAGGTGACACTTGTGAGCCGTATTTTaaaaaaaTACCCAGA 1042
||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct 662 GTTTCAAGTTCTTCCTTCACAGGTGGGTTTTGTGAGCCGTATTTTTGAAAAACACCCAGA 721
Query 1043 CATTGCATTAGGATTCAATGCAAAGAACCGACATCTGAGGACAGCATGCATGAATGTCCT 1102
| ||||| || || | | ||||||||| | ||||||| ||| ||| ||||||||||||
Sbjct 722 GACTGCATCAGAATGCCGTACAAAGAACCAAGATCTGAGAACATCATACATGAATGTCCT 781
Query 1103 CATCAGCCTAATCGAGACACTGTGCCA-GTCACCACAGGAGCTCTC-AGACGAAGATATG 1160
||| ||| ||||| ||| || | | | | ||| |||| | ||| | | || ||| ||
Sbjct 782 CATAAGCGTAATCAAGATGCTCTTCAAAGG-ACCTGAGGAACACTCCA-AGGATGATCTG 839
Query 1161 GATGAAGCAGACAA-TGCACTAGTATACGTG-CAAGATGCAGGCTTTAAGGTGGATTGGT 1218
||| ||||| | ||| || | |||| || || ||| ||| |||||| |||||||||
Sbjct 840 TCTGATGCAGA-AGCTGCTCTGGCATACATGACAC-ATGTAGGGTTTAAGTTGGATTGGT 897
Query 1219 TGGACAAG-AAGC-TGAAGGAAGTAAAAGAAAAGAA 1252
|||| || || | ||||| |||||||||||| |||
Sbjct 898 TGGAGAAACAA-CATGAAG-AAGTAAAAGAAA-GAA 930
> Ahg913344 jgi|Araly1|913344|Al_scaffold_0001_3598
Length=828
Score = 117 bits (63), Expect = 3e-25
Identities = 218/290 (75%), Gaps = 22/290 (8%)
Strand=Plus/Plus
Query 956 AGTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-GACA-CTT 1013
||| || |||| ||| ||| ||||||||||||||||||||||||||||||| || | ||
Sbjct 450 AGTAAATGAAAGCATCGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGA-ATCT- 507
Query 1014 GTGA-GCCGTATTTTaaaaaaaTACCCAGACATTGCATTAGGATTCAATGCAAAGAACCG 1072
|||| | || |||| | ||| ||||||||||||||| | |||| | |||||||||
Sbjct 508 GTGAAGA-GTCTTTTTATAAAGCACCCAGACATTGCATCACAATTCCGTCCAAAGAACCC 566
Query 1073 ACATCTGAGGACAGCATGCATGAAT-GTCCT-CATCAGCCTAATC-GAGACACTGTGCCA 1129
||| ||||| ||||||| | ||||| | | | | | ||| | || |||| ||||||||
Sbjct 567 ACACCTGAGAACAGCATACTTGAATAG-CATAC-TAAGCTTG-TCAGAGAGTCTGTGCCA 623
Query 1130 GTCACCAC-AGGAGCTCTC-AGACGAAGATATGGATGAA-GCAGACAATGCACTAG-TAT 1185
|| || | |||| ||||| | | | ||| ||| | || ||| || | ||||| | |
Sbjct 624 ATCCCC-CGAGGAACTCTCCA-ATGCTGATCTGGCT-AATGCATACTGTACACTAACT-T 679
Query 1186 ACGTG-CAAGATGCAGGCTTTAAGGTGGATTGGTTGGACAAGAAGCTGAA 1234
||| ||| | || || ||||| ||||||||||||| ||||| |||||
Sbjct 680 GTGTGACAAAA-GCGGGGTTTAAATTGGATTGGTTGGAAAAGAAACTGAA 728
> Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994
Length=891
Score = 95.3 bits (51), Expect = 1e-18
Identities = 222/302 (74%), Gaps = 22/302 (7%)
Strand=Plus/Plus
Query 962 GGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-GACA-CTTGTGA-G 1018
||||||| | ||| ||||||||||||||||||||||||||||||| || | || |||| |
Sbjct 432 GGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGA-ATCT-GTGAAG 489
Query 1019 CCGTAT-TTTaaaaaaaTACCCAGACATTGCATTAG-GATTCAATGC-AAAGAA-CCGAC 1074
| || | ||| ||||| ||| ||| |||| || | | ||| | | |||||| || |
Sbjct 490 C-GTTTGTTTGAAAAAC-ACCAAGATATTGTATCAAAGTTTCG-T-CTAAAGAATCC-AT 544
Query 1075 ATCTGAGGACAGCATGCATGAATGTCCTCATCAGCCTAATCGAGACACTGTGCCAGTCAC 1134
|| ||| ||| || ||||||||||||||| | || | ||| | || |||| || || |
Sbjct 545 ATTTGAAGACGGCGTGCATGAATGTCCTCCTGAGTTTGATCCAAACGTTGTGTCAATCGC 604
Query 1135 CACAGGAGCTCTC-AGACGAAGATATGGATGAAGCAGACAATGCACTAGTATACGTGCAA 1193
| || || ||||| | | || | | | ||| |||| |||||| | ||| || |
Sbjct 605 CTCAAGAACTCTCCA-ATGATGGTCTCTCTGATGCAGGTGTTGCACTGGAATATTTG-AT 662
Query 1194 -GATGCAGG-CTTTAAGGTGGATTGGTTGGACAAGAAGCT-GAAGGAAGTAAAAGAAAAG 1250
|| |||| ||| ||| ||||||||||||| ||||| || | | ||||||| ||||||
Sbjct 663 TGAAACAGGGCTT-AAGTTGGATTGGTTGGAGAAGAAACTTGGTG-AAGTAAAGGAAAAG 720
Query 1251 AA 1252
||
Sbjct 721 AA 722
> Ahg937127 jgi|Araly1|937127|scaffold_501318.1
Length=586
Score = 71.3 bits (38), Expect = 2e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 964 AAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAG 1004
||||||||||| |||||||||||||||||||||||||||||
Sbjct 523 AAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 563
> Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220
Length=1629
Score = 71.3 bits (38), Expect = 2e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 964 AAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAG 1004
||||||||||| |||||||||||||||||||||||||||||
Sbjct 1214 AAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 1254
> Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1
Length=927
Score = 63.9 bits (34), Expect = 4e-09
Identities = 40/43 (93%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 962 GGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAG 1004
||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 444 GGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61325294450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5