BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G58220.2 Length=1636 Score E Sequences producing significant alignments: (Bits) Value Ahg324310 jgi|Araly1|324310|fgenesh1_pm.C_scaffold_5001854 1386 0.0 Ahg486272 jgi|Araly1|486272|fgenesh2_kg.5__2264__AT3G58200.1 279 3e-74 Ahg937123 jgi|Araly1|937123|scaffold_501314.1 254 2e-66 Ahg930958 jgi|Araly1|930958|scaffold_303415.1 252 7e-66 Ahg898788 jgi|Araly1|898788|Al_scaffold_0005_2754 246 3e-64 Ahg924373 jgi|Araly1|924373|scaffold_105654.1 185 7e-46 Ahg938811 jgi|Araly1|938811|scaffold_503002.1 176 4e-43 Ahg913344 jgi|Araly1|913344|Al_scaffold_0001_3598 117 3e-25 Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994 95.3 1e-18 Ahg937127 jgi|Araly1|937127|scaffold_501318.1 71.3 2e-11 Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220 71.3 2e-11 Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1 63.9 4e-09 > Ahg324310 jgi|Araly1|324310|fgenesh1_pm.C_scaffold_5001854 Length=1308 Score = 1386 bits (750), Expect = 0.0 Identities = 1181/1376 (86%), Gaps = 82/1376 (6%) Strand=Plus/Plus Query 48 ATGGGGAGAATAGGGAGTCCACTTGGTAAGAACGAGTTCAGTTGGGTAATCAAGGATTTC 107 ||||||| |||| |||||||| ||| ||||||| |||||| ||||||||||||||||||| Sbjct 1 ATGGGGATAATACGGAGTCCATTTGATAAGAACAAGTTCACTTGGGTAATCAAGGATTTC 60 Query 108 TCCTCTTTGGGA-GTGAGGGCAATTTATTCTGACGAATTTGTGATCGGTGGCTGCAAATG 166 ||||||||| || ||| | ||||||||||| |||||||| |||||||||||||||| Sbjct 61 TCCTCTTTGCGATCTGA-GATGATTTATTCTGATGAATTTGTTCTCGGTGGCTGCAAATG 119 Query 167 GCGTCTTATAGCCTATCCC-ATGGGAAATAGGATTAAAAAGTATATGTCTTTGTATGTGG 225 ||||||||| ||||||||| | ||| ||||||||||||||||||||||||||||||||| Sbjct 120 GCGTCTTATGGCCTATCCCGA-CGGAGATAGGATTAAAAAGTATATGTCTTTGTATGTGG 178 Query 226 AAGTTGCTGATTCTAAACATTTGCCTTCTGGATGGAGTATAAACACAGAATTGCGCATGG 285 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 179 AAGTTGCTGATTCTAAACATTTGCCTTCTGGATGGAGTATACACACAGAATTGCGCATGG 238 Query 286 AAGTTGTAAATCACAATTTGTATAAGCCCTCCCAACAGAAATATAGAAAAAATTTGTGGT 345 |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 239 AAGTAGTAAATCACGATTTGTATAAGCCCTCCCAACAGAAATATAGAAAAAATTTTTGGT 298 Query 346 TTGATCAGAAGACTCCTTCCTGGGGTTATAAAACCATGATTCGTCATTCTAAACTTTCTG 405 ||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| || Sbjct 299 TTGATAAGAAGACTCCTGCCTGGGGTTATAAAACCATGATTCCACATTCTAAACTTTGTG 358 Query 406 GTGAAGAAGGGTTTTTGGTAAGTGGAGAAGTCACAATTGTAGTCAAGATAGACGTTTATA 465 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 359 GTGAAGAAGGGTTTTTGGTAAATGGAGAAGTCACAATTGTAGTCCAGATAGACGTTTATA 418 Query 466 GAGTTTTTGGCAAAGTAGCTGCAATAGAGATTTCTGAAGAGGGATCTAAAGAGGGATATG 525 ||||| |||||||||||||||||||||||| | | ||| ||||||||| | Sbjct 419 GAGTTATTGGCAAAGTAGCTGCAATAGAGA--T-T---------TCTGAAGAGGGATCT- 465 Query 526 AATATGAATCTGAAGAGGTATATAAAAAGGAATCTGAAGAGGGATATAAATATG-AATCT 584 || | | | | || |||| || | ||||||||||||| || |||| | | ||||| Sbjct 466 AA-A-G-----G--G-GG-ATATGAATATGAATCTGAAGAGGAATCTAAA-AAGAAATCT 513 Query 585 GAAGA-GGATTACGAAAAGAGACCTATAGAGAGATTTGAATATGAATCTGAAGCGGAATC 643 | ||| ||| | | | | || | | ||| ||||||||||||||||| |||||| Sbjct 514 GTAGAGGGA-T-C-----TA-A---AT-G-GGGATATGAATATGAATCTGAAGAGGAATC 560 Query 644 TAAAAAGGACTAC-GAAGAGAGAACTAGA-GGGGGATTTGAATATGAATCTGAACCGGTA 701 |||||| || | | | |||| || ||| | ||||||| |||||||||||||||| || | Sbjct 561 TAAAAACGAAT-CTGTAGAGGGATCTA-ATGGGGGATATGAATATGAATCTGAAGAGGAA 618 Query 702 TCTAAAAAGGATTAC-GAAGAGAGACCTAGA-GAGAGTTTTGAATATGAATCTGAAGCGG 759 ||||||||| | | | | |||| || ||| | | | | | ||||||||||||||||| || Sbjct 619 TCTAAAAAGAAAT-CTGTAGAGGGATCTAAATG-GGGATATGAATATGAATCTGAAGAGG 676 Query 760 AATCTAAAAAGGATTCCGAAGAGGGATCTAGAGAGAGATATGAATATGAATCTGAAGAGG 819 |||||||||||||||| |||||||||| || | || | | | | | | | | Sbjct 677 AATCTAAAAAGGATTCTGAAGAGGGATATA-A-AG-G----G---A-G-A--T----ATG 718 Query 820 AATCTAAAAAGGATTCTGAGAA-TGATTGTGGAGAGGAATCTGAAAAGGATTCTGAAGAG 878 ||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| Sbjct 719 AATCTAAAAAGGATTCTGA-AAGTGATTGTGGAGAGGAATCTGAAAAGGGTTCTGAAGAG 777 Query 879 GGAAGCAGACCTCTTAAAAAGATTAAGAGGAATGATGATGGTGTGAAGTCTAATGATTCA 938 |||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 778 GGAAGCAGGCCTCTTAAAAAGATTAAGCGAAATGATGATGGTGTGAAGTCTAATGATTCA 837 Query 939 GTCAACAAGACTCAACAAGTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCT 998 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 838 GTCAACAAGACTCAACAACTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCT 897 Query 999 TCACAGGTGACACTTGTGAGCCGTATTTTaaaaaaaTACCCAGACATTGCATTAGGATTC 1058 |||||||||| | |||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 898 TCACAGGTGAAATTTGTGAGCCGTATTTTTGAAAAATACCCAGACATTGCAGTAGGATTC 957 Query 1059 AATGCAAAGAACCGACATCTGAGGACAGCATGCATGAATGTCCTCATCAGCCTAATCGAG 1118 |||||||||||| |||||| | |||||||||||||||||||||| |||||||||||||| Sbjct 958 CATGCAAAGAACCAACATCTTAAGACAGCATGCATGAATGTCCTCCTCAGCCTAATCGAG 1017 Query 1119 ACACTGTGCCAGTCACCACAGGAGCTCTCAGACGAAGATATGGATG-AAGCAGACAATGC 1177 |||||||| |||||||| |||||||||||| | |||||||||| || ||||||||||||| Sbjct 1018 ACACTGTGTCAGTCACCTCAGGAGCTCTCAAATGAAGATATGG-TGGAAGCAGACAATGC 1076 Query 1178 ACTAGTATACGTGCAAGATGCAGGCTTTAAGGTGGATTGGTTGGACAAGAAGCTGAAGGA 1237 ||| ||| ||| ||||||| ||||||||||||||||||||||| | ||||||| |||| Sbjct 1077 TCTAACATATGTGAAAGATGCGGGCTTTAAGGTGGATTGGTTGGAGATGAAGCTGGAGGA 1136 Query 1238 AGTAAAAGAAAAGAAAGTGGTAGAGCAGACTGGTAAGACCCGGATTCAAGAATTAGAGGA 1297 ||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||| Sbjct 1137 AGTAAAAGAAAAGAAGGTGGTAGAGCAGACTGGTGAGACTCGGATTCAAGAGTTAGAGGA 1196 Query 1298 GGA-AT-T-GAAGGAATTTAAGCAG-AAGTGCTTAGACAGGGAAGCTCTGCTGGAAAAAG 1353 ||| || | ||| | || | | | ||||| | ||||| | ||||| | ||||| || | Sbjct 1197 GGACATGTTGAAC-A-TT-ATGT-GTAAGTGGTCAGACATGAAAGCTGTACTGGAGAAGG 1252 Query 1354 AGAAGGCAAAAGTGTTGGCTGCCCGAGCTTCTCTAACTTTGGATGATTTTGTCTGA 1409 ||||| ||||||||||||| || ||||| ||||||| |||||||||||||||||| Sbjct 1253 AGAAGACAAAAGTGTTGGCAGCTAGAGCTCCTCTAACATTGGATGATTTTGTCTGA 1308 Score = 219 bits (118), Expect = 7e-56 Identities = 242/300 (81%), Gaps = 16/300 (5%) Strand=Plus/Plus Query 587 AGAGGATTAC-GAAAAGAGACCTATAGAGAGATTTGAATATGAATCTGAAGCGGAATCTA 645 ||| |||| | ||| || || ||| || | ||| ||||||||||||||||| |||||||| Sbjct 444 AGA-GATTTCTGAAGAGGGATCTAAAGGGGGATATGAATATGAATCTGAAGAGGAATCTA 502 Query 646 AAAAGGACTAC-GAAGAGAGAACTAGAGGGGGATTTGAATATGAATCTGAACCGGTATCT 704 ||||| | | | | |||| || ||| | |||||| |||||||||||||||| || |||| Sbjct 503 AAAAGAAAT-CTGTAGAGGGATCTAAATGGGGATATGAATATGAATCTGAAGAGGAATCT 561 Query 705 AAAAAGGATTAC-GAAGAGAGACCTAGA-GAGAGTTTTGAATATGAATCTGAAGCGGAAT 762 ||||| || | | | |||| || ||| | | | | | ||||||||||||||||| ||||| Sbjct 562 AAAAACGAAT-CTGTAGAGGGATCTA-ATGGGGGATATGAATATGAATCTGAAGAGGAAT 619 Query 763 CTAAAAAGGATTCCGAAGAGGGATCTAGA-GAGAGATATGAATATGAATCTGAAGAGGAA 821 |||||||| | || | ||||||||||| | | | |||||||||||||||||||||||||| Sbjct 620 CTAAAAAGAAATCTGTAGAGGGATCTAAATG-GGGATATGAATATGAATCTGAAGAGGAA 678 Query 822 TCTAAAAAGGATTCTGA-GAATGAT-TGT-GG-AGAG--GAATCTGAAAAGGATTCTGAA 875 ||||||||||||||||| || ||| | || ||| |||||| |||||||||||||| Sbjct 679 TCTAAAAAGGATTCTGAAGAGGGATATAAAGGGAGATATGAATCTAAAAAGGATTCTGAA 738 Score = 163 bits (88), Expect = 3e-39 Identities = 156/188 (83%), Gaps = 7/188 (4%) Strand=Plus/Plus Query 657 GAAGAGAGAACTAGAGGGGGATTTGAATATGAATCTGAACCGGTATCTAAAAAGGATTAC 716 |||||| || ||| |||||||| |||||||||||||||| || |||||||||| | | | Sbjct 454 GAAGAGGGATCTAAAGGGGGATATGAATATGAATCTGAAGAGGAATCTAAAAAGAAAT-C 512 Query 717 -GAAGAGAGACCTAGA-GAGAGTTTTGAATATGAATCTGAAGCGGAATCTAAAAAGGATT 774 | |||| || ||| | | | | | ||||||||||||||||| |||||||||||| || | Sbjct 513 TGTAGAGGGATCTAAATG-GGGATATGAATATGAATCTGAAGAGGAATCTAAAAACGAAT 571 Query 775 CCGAAGAGGGATCTAGA-GAGAGATATGAATATGAATCTGAAGAGGAATCTAAAAAGGAT 833 | | ||||||||||| | | | ||||||||||||||||||||||||||||||||||| | Sbjct 572 CTGTAGAGGGATCTA-ATGGGGGATATGAATATGAATCTGAAGAGGAATCTAAAAAGAAA 630 Query 834 TCTG-AGA 840 |||| ||| Sbjct 631 TCTGTAGA 638 Score = 130 bits (70), Expect = 3e-29 Identities = 141/174 (81%), Gaps = 9/174 (5%) Strand=Plus/Plus Query 711 GATTAC-GAAGAGAGACCTAGAGAGAGTTTTGAATATGAATCTGAAGCGGAATCTAAAAA 769 |||| | |||||| || ||| || | | | ||||||||||||||||| |||||||||||| Sbjct 447 GATTTCTGAAGAGGGATCTAAAGGGGGATATGAATATGAATCTGAAGAGGAATCTAAAAA 506 Query 770 GGATTCCGAAGAGGGATCTAGA-GAGAGATATGAATATGAATCTGAAGAGGAATCTAAAA 828 | | || | ||||||||||| | | | ||||||||||||||||||||||||||||||||| Sbjct 507 GAAATCTGTAGAGGGATCTAAATG-GGGATATGAATATGAATCTGAAGAGGAATCTAAAA 565 Query 829 AGGATTCTG-AGAATGAT-TG-TGGAGAGGAATCTGAAAAGGATTCTGAAGAGG 879 | || |||| ||| ||| | ||| | ||| | |||| | || |||||||||| Sbjct 566 ACGAATCTGTAGAGGGATCTAATGG-G-GGA-TATGAATATGAATCTGAAGAGG 616 Score = 87.9 bits (47), Expect = 2e-16 Identities = 62/69 (90%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 773 TTCCGAAGAGGGATCTAGAGAGAGATATGAATATGAATCTGAAGAGGAATCTAAAAAGGA 832 ||| ||||||||||||| || | ||||||||||||||||||||||||||||||||||| | Sbjct 450 TTCTGAAGAGGGATCTAAAGGGGGATATGAATATGAATCTGAAGAGGAATCTAAAAAGAA 509 Query 833 TTCTG-AGA 840 |||| ||| Sbjct 510 ATCTGTAGA 518 > Ahg486272 jgi|Araly1|486272|fgenesh2_kg.5__2264__AT3G58200.1 Length=988 Score = 279 bits (151), Expect = 3e-74 Identities = 369/472 (78%), Gaps = 24/472 (5%) Strand=Plus/Plus Query 955 AAGTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-GACACTT 1013 ||| ||| |||| ||| ||| ||||||||||||| ||||||||||| ||||| || | || Sbjct 530 AAG-GAA-GAAATCATTGATGTCAATGGGTTTCATGTTCTTCCTTCCCAGGTGGA-ATTT 586 Query 1014 GTGAGCCGTATTTTaaaaaaaTACCCAGACATTGCATTAGGATTCAATGCAAAGAACCGA 1073 || |||| | |||| ||| ||||||||| ||||||| || |||| | |||||||| | | Sbjct 587 GTTAGCCCTGTTTTTGAAAGATACCCAGAAATTGCATCAGTATTCCAGGCAAAGAAGCAA 646 Query 1074 CATCTGAGGACAGCATGCATGAATGTCCTCATCAGCCTAATCGAGACACTGTGCCAGTCA 1133 ||| |||| || ||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 647 CATTTGAGAACCGCATGCATGTATGTCCTCCTCAGCCTAATCGAGACACTGTGCCAGTCA 706 Query 1134 CCACAGGAGCTCT-CAGACGAAGATATGGATGA-AGCAGACAATGCACTAGTATACGTGC 1191 | | ||||||| ||| || ||| | | || || ||||||||| || |||| || Sbjct 707 CTGGAAGAGCTCTGCAGT-GATGATCTTG-TGGGAGGTGACAATGCATTACAATACCTGA 764 Query 1192 AAGATGCAGGCTTTAAGGTGGATTGGTTGGACAAGAAGCTGAAGGAAGTAAAAGAAAAGA 1251 || | | ||||||||||| ||||||||||| ||||||||| ||||| | || | ||||| Sbjct 765 AATTTTCGGGCTTTAAGGTTGATTGGTTGGAGAAGAAGCTGGAGGAAATTAAGGTAAAGA 824 Query 1252 A-AGTGGTAGAGCAGACTGGT-AAGACCCGGATTCAAGAATTAGAGGAGGAATTGAAGGA 1309 | | || ||| || | |||| || | || || |||||||||||||| ||||||||| Sbjct 825 AGAA-GGAAGAACAAATTGGTGAA-AGTCGTATGCAAGAATTAGAGGAAGAATTGAAGCT 882 Query 1310 ATTTAAGCAGAAGTGCTTAGACAGGGAAGCTCTGCTGGAAAAAGAGAAGGCAAAAGT-GT 1368 |||||| | | ||||| ||| | |||||||| |||| | ||||||| |||| || || Sbjct 883 TTTTAAG-A-A-GTGCTCAGATATAGAAGCTCTTATGGAGACAGAGAAGACAAA-GTTGT 938 Query 1369 TGGCTGC-CC-GAGCTTCTC-T--AACTTTGGATGATTTTGTCTGATGACTT 1415 ||| | | || ||| ||||| | ||| ||||||||| || | ||| ||||| Sbjct 939 TGG-T-CACCAGAGGTTCTCCTCTAACGTTGGATGATGTTCTTTGAAGACTT 988 > Ahg937123 jgi|Araly1|937123|scaffold_501314.1 Length=1048 Score = 254 bits (137), Expect = 2e-66 Identities = 329/418 (79%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 963 GAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTG-ACA-CTTGTGAGCC 1020 |||| ||| ||| |||||||||||||||||||||||||||||| | | | | |||| | Sbjct 531 GAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGA-ATCC-GTGAAAC 588 Query 1021 GTATTTTaaaaaaaTACCCAGACATTGCATTAG-GATTCAATGCAAAGAACCGACATCTG 1079 |||| || ||| | |||||||||| ||||||| | ||| | | || ||||| |||| || Sbjct 589 GTATATTCGAAAGACACCCAGACATGGCATTAGAGTTTCGA-GTAATGAACCAACATATG 647 Query 1080 AGGACAGCATGCATGAATGTCCTCATCAGCCTAATCGAGACACTGTGCCAGTCACC-ACA 1138 |||||| |||||| ||| ||||| ||| | |||||||||| |||||||||||| | | Sbjct 648 AGGACATTATGCATAAATCTCCTCCTCAACATAATCGAGACTTTGTGCCAGTCACTGAAA 707 Query 1139 GGAGC-TCTC-AGACGAAGATA-TGGATGAAGCAGACAATGCACTA-GTATACGTGCAAG 1194 | | | | || | | | || | ||| ||||||| || |||||| | |||| || ||| Sbjct 708 G-A-CATTTCCATTC-ATGA-ACTGGGCCAAGCAGAGAAAGCACTAAG-ATACCTGAAAG 762 Query 1195 ATGCAGG-CTTTAAGGTGGATTGGTTGGA-CA-AGAAGCTGAAGGAAGTAAAAGAAAAGA 1251 || | || |||||||||||||||||| || || | || ||| |||||||||| ||||||| Sbjct 763 ATTC-GGACTTTAAGGTGGATTGGTTAGAGCATA-AA-CTGGAGGAAGTAAAGGAAAAGA 819 Query 1252 A-AGTGGTAGAGCAGACTGGTAAGACCCGGATTCAAGAATTAGAGGAGGAATTGAAGGAA 1310 | | ||| |||||||| ||||||| | ||||| |||||||||||||| ||| |||||| Sbjct 820 AGA-TGGAAGAGCAGATTGGTAAGTCTCGGATGCAAGAATTAGAGGAAGAACTGAAGGTC 878 Query 1311 TTTAAGCAGAAGTGCT-TAGACAGGGAAGCTCTGCTGGAAAAAGAGAAGGCAAAAGTG 1367 || |||||||| |||| | |||| ||||||| ||||| ||||| ||| |||||||| Sbjct 879 TTCAAGCAGAATTGCTCT-GACATAGAAGCTCAACTGGAGAAAGAAAAG-CAAAAGTG 934 > Ahg930958 jgi|Araly1|930958|scaffold_303415.1 Length=959 Score = 252 bits (136), Expect = 7e-66 Identities = 314/398 (79%), Gaps = 20/398 (5%) Strand=Plus/Plus Query 972 GATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTG-ACA-CTTGTGAGCCGTATTTTaa 1029 ||| |||||||||||||||||||||||||||||| | | | || |||| ||||| || Sbjct 418 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGA-ATCT-GTGAAACGTATATTCG 475 Query 1030 aaaaaTACCCAGACATTGCATTAGGATTCA-ATGCAAAGAACCGACATCTGAGGACAGCA 1088 ||||| |||||||||| ||| || |||| | |||||||||| |||| ||| |||| || Sbjct 476 AAAAACACCCAGACATGGCACTAAAATTCCGA-GCAAAGAACCAACATTTGAAGACATCA 534 Query 1089 TGCATGAATGTCCTCATCAGCCTAATCGAGACACTGTGCCAGTCACCACAGGAGCTCTC- 1147 ||||| ||||||||| ||||| ||||| |||| |||||||||||| || || || || Sbjct 535 TGCATAAATGTCCTCCTCAGCTTAATCAAGACGTTGTGCCAGTCACTGCAAGACCTTTCC 594 Query 1148 AGACGAAGATATGGATGAAGCAGA-CAATGCACTAGTATA-CGTGCAAGA-TGCAGGCTT 1204 | || || ||| ||||||| ||| |||||| ||| | || || | | ||||| Sbjct 595 ATT-GATGACCTGGGCCAAGCAGAGCAA-GCACTAACATATC-TG-AATAATTTGGGCTT 650 Query 1205 TAAGGTGGATTGGTTGGACAAG-AAGCTGAAGGAAGTAAAAGAAAAGAAAG-TGGTAGAG 1262 |||||||||||||||||| | || ||| |||||||||| | ||| |||| ||| |||| Sbjct 651 TAAGGTGGATTGGTTGGAGT-GTAAACTGGAGGAAGTAAAGGCAAA-AAAGATGGAAGAG 708 Query 1263 CAGACTGGTAAGACCCGGATTCAAGAATTAGAGGAGGAATTGAAGGAATTTAAGCAGAAG 1322 |||| ||||||||| ||||| |||||||||||| | || ||||| |||||| ||||| Sbjct 709 CAGATTGGTAAGACTCGGATGCAAGAATTAGAGAAAGACCTGAAGCTCTTTAAGAAGAAG 768 Query 1323 TGCT-TAGACAGGGAAGCTCTGCTGGAAAAAGAGAAGG 1359 |||| | |||| |||||| ||||||| |||||||||| Sbjct 769 TGCTCT-GACATAGAAGCTTTGCTGGAGAAAGAGAAGG 805 > Ahg898788 jgi|Araly1|898788|Al_scaffold_0005_2754 Length=918 Score = 246 bits (133), Expect = 3e-64 Identities = 252/309 (82%), Gaps = 10/309 (3%) Strand=Plus/Plus Query 949 CTCAACAAGTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-G 1007 |||||||||||||||||| ||| | | | ||||||||||||||||||||||||||||| | Sbjct 479 CTCAACAAGTGAAGGAAAGCATTGTTGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAG 538 Query 1008 ACA-CTTGTGAGCCGTATTTTaaaaaaaTACCCAGACATTGCATTAGGATTC-AATGCAA 1065 | | || |||||||||||||| |||| ||||||| |||||| |||| ||| || | || Sbjct 539 A-ATCT-GTGAGCCGTATTTTTGAAAAGCACCCAGAGATTGCAGTAGGGTTCCAA-GTAA 595 Query 1066 AGAACCGACATCTGAGGACAGCATGCATGAATGTCCTCATCAGCCTAATCGAGACACTGT 1125 |||||| ||||||||||| | ||| ||||||| |||| ||| | |||| ||||| |||| Sbjct 596 AGAACCAACATCTGAGGAAAACATTCATGAATTTCCTGGTCAACGTAATTGAGACGCTGT 655 Query 1126 GCCAGTCACCACAGGAGCTCTCAGACGAAGATATGGATG-AAGCAGACAATGCACT-AGT 1183 | || || | |||||||||||| | |||||| | | || ||| ||||| |||||| | Sbjct 656 GTCAATCTCTTCAGGAGCTCTCAAATGAAGATCTTG-TGGAAGTAGACATTGCACTGAC- 713 Query 1184 ATACGTGCAAGATGCAGGCTTTAAGGTGGATTGGTTGGACAAGAAGCTGAAGGAAGTAAA 1243 ||| || ||||||| || ||||||||||||||||| || ||||||||| | |||| || Sbjct 714 ATATTTGAAAGATGCGGGATTTAAGGTGGATTGGTTAGAGAAGAAGCTGGACCAAGTGAA 773 Query 1244 AGAAAAGAA 1252 ||||||||| Sbjct 774 AGAAAAGAA 782 > Ahg924373 jgi|Araly1|924373|scaffold_105654.1 Length=1003 Score = 185 bits (100), Expect = 7e-46 Identities = 304/398 (76%), Gaps = 31/398 (8%) Strand=Plus/Plus Query 870 TCTGAAGAGGGAAGCAGACCTCTTAAAAAGATTAAGAGGAATGATGATGGTGTGAAGTCT 929 ||| ||||| |||| | ||||| |||||||| ||| ||||| ||| ||| | ||||| Sbjct 465 TCTAAAGAGTCAAGCCGCCCTCTGAAAAAGATAAAGCTAAATGAGGATTGTGCGGAGTCT 524 Query 930 AATGATTCAG-TCAA-CAAGAC-TCAACAAGTGAAGGAAACCATGGATATCAATGGGTTT 986 ||||| || | |||| ||| | ||| | ||| || |||| ||||| | | ||||||||| Sbjct 525 AATGAGTC-GATCAAGGAAG-CTTCATC-AGTAAAAGAAAGCATGG-T-T-AATGGGTTT 578 Query 987 CAAGTTCTTCCTTCACAGGT-GACA-CTTGTGAGCCGTAT-TTTaaaaaa-aTACCCAGA 1042 ||||||||||||||||||| || | || ||||| ||||| ||| ||| | || || ||| Sbjct 579 CAAGTTCTTCCTTCACAGGAAGA-ATCT-GTGAGACGTATATTTGAAAGACAT-CC-AGA 634 Query 1043 CATTGCATTAGGA-TTCAATGCAAAGAACCGACATCTGAGGACAGCATGCATGAATGTCC 1101 ||||| ||| | ||| ||||||||||| ||| || |||||| |||| |||||| || Sbjct 635 CATTGTGGTAG-ACTTCCGTGCAAAGAACCAACAGCTCAGGACAACATGGATGAATTTCT 693 Query 1102 T-CATCAGCCTAATCGAGACACTGTGCCAGTCACCACAGGAGCTCTC-AGACGAAGATAT 1159 | | ||||| | |||||||| |||||| ||||| |||||||| || | | || ||| | Sbjct 694 TGC-TCAGCTTGATCGAGACGCTGTGCAAGTCAATTCAGGAGCTTTCCA-ATGACGATCT 751 Query 1160 GGATGAA-GCAGACAATGCACT-AGTATACGTGCAAGATGC-AGGCTTTAAGGTGGATTG 1216 | || | ||||||| ||| || | | || || ||| || | ||||||||| ||||| Sbjct 752 TG-TGGATGCAGACATTGCGCTGAC-ACACTTGAAAGCTGTGAA-CTTTAAGGTAGATTG 808 Query 1217 GTTGGACAAGAAGCT-GAAGGAAGTAAAAGAAAAGAAA 1253 | |||| |||||||| || ||||||||||||||||| Sbjct 809 GCTGGAAAAGAAGCTTGATC-AAGTAAAAGAAAAGAAA 845 > Ahg938811 jgi|Araly1|938811|scaffold_503002.1 Length=1099 Score = 176 bits (95), Expect = 4e-43 Identities = 300/396 (76%), Gaps = 25/396 (6%) Strand=Plus/Plus Query 866 GGATTCTGAAGAGGGAA-GCAGACCTCTTAAAAAGATTAAG-AGGAATGATGATGGTGTG 923 ||| |||||||||| || || |||| | |||||||| ||| | |||||||||||||| | Sbjct 551 GGAATCTGAAGAGGAAACCCA-ACCTGTGAAAAAGATAAAGCA-GAATGATGATGGTGCG 608 Query 924 AAGTCTAATGATTCAG-TCAACAAGACTCAACAAGTGAAGGAAACCATGGATATCAATGG 982 ||||| ||| || | | || ||| || | || | | || ||||| ||||||| Sbjct 609 GTGTCTAGTGA-TCTGCTTAAGGAGATTC--C-AG-G-A-GATTTGGTGGATGTCAATGG 661 Query 983 GTTTCAAGTTCTTCCTTCACAGGTGACACTTGTGAGCCGTATTTTaaaaaaaTACCCAGA 1042 ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| Sbjct 662 GTTTCAAGTTCTTCCTTCACAGGTGGGTTTTGTGAGCCGTATTTTTGAAAAACACCCAGA 721 Query 1043 CATTGCATTAGGATTCAATGCAAAGAACCGACATCTGAGGACAGCATGCATGAATGTCCT 1102 | ||||| || || | | ||||||||| | ||||||| ||| ||| |||||||||||| Sbjct 722 GACTGCATCAGAATGCCGTACAAAGAACCAAGATCTGAGAACATCATACATGAATGTCCT 781 Query 1103 CATCAGCCTAATCGAGACACTGTGCCA-GTCACCACAGGAGCTCTC-AGACGAAGATATG 1160 ||| ||| ||||| ||| || | | | | ||| |||| | ||| | | || ||| || Sbjct 782 CATAAGCGTAATCAAGATGCTCTTCAAAGG-ACCTGAGGAACACTCCA-AGGATGATCTG 839 Query 1161 GATGAAGCAGACAA-TGCACTAGTATACGTG-CAAGATGCAGGCTTTAAGGTGGATTGGT 1218 ||| ||||| | ||| || | |||| || || ||| ||| |||||| ||||||||| Sbjct 840 TCTGATGCAGA-AGCTGCTCTGGCATACATGACAC-ATGTAGGGTTTAAGTTGGATTGGT 897 Query 1219 TGGACAAG-AAGC-TGAAGGAAGTAAAAGAAAAGAA 1252 |||| || || | ||||| |||||||||||| ||| Sbjct 898 TGGAGAAACAA-CATGAAG-AAGTAAAAGAAA-GAA 930 > Ahg913344 jgi|Araly1|913344|Al_scaffold_0001_3598 Length=828 Score = 117 bits (63), Expect = 3e-25 Identities = 218/290 (75%), Gaps = 22/290 (8%) Strand=Plus/Plus Query 956 AGTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-GACA-CTT 1013 ||| || |||| ||| ||| ||||||||||||||||||||||||||||||| || | || Sbjct 450 AGTAAATGAAAGCATCGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGA-ATCT- 507 Query 1014 GTGA-GCCGTATTTTaaaaaaaTACCCAGACATTGCATTAGGATTCAATGCAAAGAACCG 1072 |||| | || |||| | ||| ||||||||||||||| | |||| | ||||||||| Sbjct 508 GTGAAGA-GTCTTTTTATAAAGCACCCAGACATTGCATCACAATTCCGTCCAAAGAACCC 566 Query 1073 ACATCTGAGGACAGCATGCATGAAT-GTCCT-CATCAGCCTAATC-GAGACACTGTGCCA 1129 ||| ||||| ||||||| | ||||| | | | | | ||| | || |||| |||||||| Sbjct 567 ACACCTGAGAACAGCATACTTGAATAG-CATAC-TAAGCTTG-TCAGAGAGTCTGTGCCA 623 Query 1130 GTCACCAC-AGGAGCTCTC-AGACGAAGATATGGATGAA-GCAGACAATGCACTAG-TAT 1185 || || | |||| ||||| | | | ||| ||| | || ||| || | ||||| | | Sbjct 624 ATCCCC-CGAGGAACTCTCCA-ATGCTGATCTGGCT-AATGCATACTGTACACTAACT-T 679 Query 1186 ACGTG-CAAGATGCAGGCTTTAAGGTGGATTGGTTGGACAAGAAGCTGAA 1234 ||| ||| | || || ||||| ||||||||||||| ||||| ||||| Sbjct 680 GTGTGACAAAA-GCGGGGTTTAAATTGGATTGGTTGGAAAAGAAACTGAA 728 > Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994 Length=891 Score = 95.3 bits (51), Expect = 1e-18 Identities = 222/302 (74%), Gaps = 22/302 (7%) Strand=Plus/Plus Query 962 GGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-GACA-CTTGTGA-G 1018 ||||||| | ||| ||||||||||||||||||||||||||||||| || | || |||| | Sbjct 432 GGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGA-ATCT-GTGAAG 489 Query 1019 CCGTAT-TTTaaaaaaaTACCCAGACATTGCATTAG-GATTCAATGC-AAAGAA-CCGAC 1074 | || | ||| ||||| ||| ||| |||| || | | ||| | | |||||| || | Sbjct 490 C-GTTTGTTTGAAAAAC-ACCAAGATATTGTATCAAAGTTTCG-T-CTAAAGAATCC-AT 544 Query 1075 ATCTGAGGACAGCATGCATGAATGTCCTCATCAGCCTAATCGAGACACTGTGCCAGTCAC 1134 || ||| ||| || ||||||||||||||| | || | ||| | || |||| || || | Sbjct 545 ATTTGAAGACGGCGTGCATGAATGTCCTCCTGAGTTTGATCCAAACGTTGTGTCAATCGC 604 Query 1135 CACAGGAGCTCTC-AGACGAAGATATGGATGAAGCAGACAATGCACTAGTATACGTGCAA 1193 | || || ||||| | | || | | | ||| |||| |||||| | ||| || | Sbjct 605 CTCAAGAACTCTCCA-ATGATGGTCTCTCTGATGCAGGTGTTGCACTGGAATATTTG-AT 662 Query 1194 -GATGCAGG-CTTTAAGGTGGATTGGTTGGACAAGAAGCT-GAAGGAAGTAAAAGAAAAG 1250 || |||| ||| ||| ||||||||||||| ||||| || | | ||||||| |||||| Sbjct 663 TGAAACAGGGCTT-AAGTTGGATTGGTTGGAGAAGAAACTTGGTG-AAGTAAAGGAAAAG 720 Query 1251 AA 1252 || Sbjct 721 AA 722 > Ahg937127 jgi|Araly1|937127|scaffold_501318.1 Length=586 Score = 71.3 bits (38), Expect = 2e-11 Identities = 40/41 (98%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 964 AAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAG 1004 ||||||||||| ||||||||||||||||||||||||||||| Sbjct 523 AAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 563 > Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220 Length=1629 Score = 71.3 bits (38), Expect = 2e-11 Identities = 40/41 (98%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 964 AAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAG 1004 ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1214 AAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 1254 > Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1 Length=927 Score = 63.9 bits (34), Expect = 4e-09 Identities = 40/43 (93%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 962 GGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAG 1004 ||||||| | ||| ||||||||||||||||||||||||||||| Sbjct 444 GGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 486 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61325294450 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5