BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58240.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898776 jgi|Araly1|898776|Al_scaffold_0005_2742 1441 0.0
Ahg938811 jgi|Araly1|938811|scaffold_503002.1 374 8e-103
Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994 104 1e-21
Ahg319311 jgi|Araly1|319311|fgenesh1_pm.C_scaffold_3002327 99.0 6e-20
Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996 93.5 3e-18
Ahg486280 jgi|Araly1|486280|fgenesh2_kg.5__2272__AT3G58270.1 76.8 3e-13
Ahg896922 jgi|Araly1|896922|Al_scaffold_0005_888 60.2 3e-08
Ahg336568 jgi|Araly1|336568|fgenesh1_pg.C_scaffold_1003133 54.7 1e-06
> Ahg898776 jgi|Araly1|898776|Al_scaffold_0005_2742
Length=954
Score = 1441 bits (780), Expect = 0.0
Identities = 900/958 (94%), Gaps = 8/958 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAATCCAGTCGATAACAAGTTCACTTGGGTGATTAAGAATTTTTGTTCTGTGAGC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGGGAATCCAGTCGATAACAAGTTCACTTGGGTGATTAAGAATTTTTGCTCTGTGAGC 60
Query 61 CCCAAGCCCATTTATTCAGATCAATTCTTGATTGGTGGCAACAAATGGCATATTCTGGCC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 61 TCCAAGCCCATTTATTCAGATCAATTCTTGATTGGTGGCTACAAATGGCATATTTTGGCC 120
Query 121 TATTCCAAGAAACGAGATGGTCATCAATTCCTTTGTCTGGATCTGGAACTTGTTGATTGT 180
||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 121 TATCCCAAGAAACGAGATGGTCATCAATGCTTTTGTCTGGATCTGGAACTTGTTGATTGT 180
Query 181 GAATTCTTGCCTTCTGAATGGAGAAAG-GTCGTGAAGGTTTCCTTTACTGTCGTAAATTT 239
|||||||||||||||| |||||| ||| ||||||||| |||| ||||||||||||||||
Sbjct 181 GAATTCTTGCCTTCTGGATGGAG-AAGCGTCGTGAAGTTTTCTTTTACTGTCGTAAATTA 239
Query 240 TTTCTCGAAGAAACTCTCAAGACAGATAGGACTAAAACAC-TGTTTTAATAAGAAGGAAC 298
||||||||||||||||||||| |||||||||||||||||| || |||| |||||||||||
Sbjct 240 TTTCTCGAAGAAACTCTCAAGCCAGATAGGACTAAAACACTTG-TTTACTAAGAAGGAAC 298
Query 299 GAAGCAAGGGTGGATCCTTGTTTCACCTTAGTGAACTTACGGACaaaaaaaGTGGGTTTC 358
||||||||||| |||| || ||||| ||||||||||||||||||||||| |||||||||
Sbjct 299 GAAGCAAGGGTTTATCCGTGATTCACTTTAGTGAACTTACGGACAAAAAACGTGGGTTTC 358
Query 359 TGGTGGATGGAGAAGTCGAAATTGTTGCCCAGATA-ACTGTTCTTGAAACTGATCGCAGA 417
| |||||||||||||||||||||||||| |||||| | ||||| ||||||||||| | |
Sbjct 359 TTGTGGATGGAGAAGTCGAAATTGTTGCTCAGATAGA-TGTTCGTGAAACTGATCATAAA 417
Query 418 TTTCATGTATCGAAGGACTATAACATGGAAATGCAATGTTGGGATGGGATGGCAACGACA 477
|| || | ||| ||||||||| ||||||||||||||| || | |||||||||||||||||
Sbjct 418 TTACAAGGATCAAAGGACTATGACATGGAAATGCAATATTTGAATGGGATGGCAACGACA 477
Query 478 CTTGTCGA-AAACAAAGAGCTCAATGATGATGACAAGGCAGGTTTGGTGAATGTCAAGGG 536
|| || | ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTTTTC-ATAAACAAAGAGCCCAATGATGATGACAAGGCAGGTTTGGTGAATGTCAAGGG 536
Query 537 GTTTCAAGTTCTTCCTTCACAGTTGGGTATTGTGAATCGCATCTTTGAAAAACACCCGGA 596
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 537 GTTTCAAGTTCTTCCTTCACAGTTGGGTATTGTGAATCGCATCTTTGAGAAACACCCGGA 596
Query 597 GACTGCATTAGAATGCTGTACGAAGAACCAAGAACTGAGAGCATCATACATAAATGTCAT 656
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 597 GACTGCATTAGAATGCTGTACAAAGAACCAAGAACTGAGAGCATCATACATAAATGTCAT 656
Query 657 CTTTAGCCTAATCAAGTTGCTCTACAAAGGGGCTCAGGAACACTCCACACATGATCTGTC 716
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CTTTAGCCTAATCAAGATGCTCTACAAAGGGGCTCAGGAACACTCCACACATGATCTGTC 716
Query 717 TGATGCAGAAGGTGCTCTGGCATACATGAAAAATCTAGGGTTTAAGTTGGATTGGTTGGA 776
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 717 TGATGCAGAAGGTGCTCTGGCATACATGAAAAATGTAGGGTTTAAGTTGGATTGGTTGGA 776
Query 777 GAAGAAACTTGATGAAGTCAAAGAAATCAAGAAGAAATGTGAGCGAGTGACTGAAATGGA 836
|||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| |
Sbjct 777 GAAGAAACTTGATGAAGTAAAAGAAATCAAGAAGAAATGTGAACGGGTGACTGAAATGCA 836
Query 837 GAAAGAGCTGCACGACTTGATGAATAAGCACACAAACGTAAGTAAACTGCTGGAAAAGGA 896
| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 837 GCAAGAGCTGCATGACTTGATGAATAAGCACACAAACGTAAGTATACTGCTGGAAAAGGA 896
Query 897 GAAGTTAGAGATTAAGAATGCGTCGGCTCCTGATCTATCTTTCAGTGATGTTATTTGA 954
|| |||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 897 GATGTTAGAGATTAAGAATGCTTCAGCTCCTGATCTATCTTTCAGTGATGTTATTTGA 954
> Ahg938811 jgi|Araly1|938811|scaffold_503002.1
Length=1099
Score = 374 bits (202), Expect = 8e-103
Identities = 371/451 (82%), Gaps = 17/451 (4%)
Strand=Plus/Plus
Query 512 AGGCAGGTTTGGTGAATGTCAAGGGGTTTCAAGTTCTTCCTTCACAGTTGGGTATTGTGA 571
||| || ||||||| ||||||| |||||||||||||||||||||||| ||||| ||||||
Sbjct 638 AGG-AGATTTGGTGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTGGGTTTTGTGA 696
Query 572 ATCGCATCTTTGAAAAACACCCGGAGACTGCATTAGAATGCTGTACGAAGAACCAAGAAC 631
|| || |||||||||||||| |||||||||| ||||||| |||| ||||||||||| |
Sbjct 697 GCCGTATTTTTGAAAAACACCCAGAGACTGCATCAGAATGCCGTACAAAGAACCAAGATC 756
Query 632 TGAGAGCATCATACATAAATGTCATCTTTAGCCTAATCAAGTTGCTCTACAAAGGGGCTC 691
||||| |||||||||| |||||| || | ||| |||||||| |||||| |||||| ||
Sbjct 757 TGAGAACATCATACATGAATGTCCTCATAAGCGTAATCAAGATGCTCTTCAAAGGACCTG 816
Query 692 AGGAACACTCCACA-CATGATCTGTCTGATGCAGAAGGTGCTCTGGCATACATGAAAAAT 750
|||||||||||| | ||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 817 AGGAACACTCCA-AGGATGATCTGTCTGATGCAGAAGCTGCTCTGGCATACATGACACAT 875
Query 751 CTAGGGTTTAAGTTGGATTGGTTGGAGAAGA-AACTTGATGAAGTCAAAGAAATCAA-GA 808
|||||||||||||||||||||||||||| | ||| ||| ||||| ||||||| || ||
Sbjct 876 GTAGGGTTTAAGTTGGATTGGTTGGAGAA-ACAACATGAAGAAGTAAAAGAAAG-AATGA 933
Query 809 AGAAATGTGAGCGAGTGACTGAAATGGAGAAAGAGCTGCACGACTTG-ATGAATAAGCAC 867
||||||||| || ||| |||||| |||||| ||||||| |||||| | | | ||| |
Sbjct 934 AGAAATGTGCCCGGGTGTGTGAAATAGAGAAACAGCTGCATGACTTGGA-GCACAAGTGC 992
Query 868 ACAA-ACGTAAGTAAACT--GCTGGA-AAAGGAGAAGTTAGAGATTAAGAATGCGTCGGC 923
| || || ||| || || |||| | |||| ||||| |||||| | | || | ||
Sbjct 993 A-AAGACCTAA--AAGCTCAGCTGAATAAAG-AGAAGGCGGAGATTTTGGAGGCAACAGC 1048
Query 924 TCCTGATCTATCTTTCAGTGATGTTATTTGA 954
||||||||| | ||||| ||||||| |||||
Sbjct 1049 TCCTGATCTTTTTTTCATTGATGTTGTTTGA 1079
> Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994
Length=891
Score = 104 bits (56), Expect = 1e-21
Identities = 223/300 (74%), Gaps = 26/300 (9%)
Strand=Plus/Plus
Query 527 ATGTCAAGGGGTTTCAAGTTCTTCCTTCACAGTTGGGTAT-TGTGAATCGCATCTTTGAA 585
||||||| |||||||||||||||||||||||| | | || |||||| || | ||||||
Sbjct 443 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGT-AGAATCTGTGAAGCGTTTGTTTGAA 501
Query 586 AAACACCCGGAGACTGCATTAGAATG-CT-GTAC-GAAGAA-CCAAGAACTG-AGAGCAT 640
||||||| || | || || | || | | || | ||||| || | | || ||| |
Sbjct 502 AAACACCAAGATATTGTATCA-AA-GTTTCGT-CTAAAGAATCC-ATATTTGAAGA-CGG 556
Query 641 CATACATAAATGTCATCTTTAGCCTAAT-C-AA-GTTGCTCTACAAAGGGGCTCAGGAAC 697
| | ||| |||||| || | || | || | || |||| | | | || | |||| ||||
Sbjct 557 CGTGCATGAATGTCCTCCTGAGTTTGATCCAAACGTTG-TGT-C-AATCGCCTCAAGAAC 613
Query 698 ACTCCACA-CATGATCTGTCTGATGCAGAAGGTGCTCTGGCATACATGA--AAAATCTAG 754
||||| | ||| ||| |||||||||| | ||| |||| ||| ||| ||| | ||
Sbjct 614 TCTCCA-ATGATGGTCTCTCTGATGCAGGTGTTGCACTGGAATATTTGATTGAAA-C-AG 670
Query 755 GGTTTAAGTTGGATTGGTTGGAGAAGAAACTTGATGAAGTCAAAG-AAATCAAGAAGAAA 813
|| |||||||||||||||||||||||||||||| |||||| |||| ||| |||||||||
Sbjct 671 GGCTTAAGTTGGATTGGTTGGAGAAGAAACTTGGTGAAGT-AAAGGAAAAGAAGAAGAAA 729
> Ahg319311 jgi|Araly1|319311|fgenesh1_pm.C_scaffold_3002327
Length=585
Score = 99.0 bits (53), Expect = 6e-20
Identities = 105/129 (81%), Gaps = 8/129 (6%)
Strand=Plus/Plus
Query 689 CTCAGGAACACTCCACA-CATGATCTGTCTGATGCAGAAGGTGC-TCTGGCATACATGA- 745
|||| |||| ||||| | ||||||| |||||||| | | ||| | ||||||| |||
Sbjct 305 CTCAAGAACTCTCCA-ATGATGATCTCTCTGATGCTGGCGCTGCAT-TGGCATATTTGAG 362
Query 746 AAAATCTAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACTTGATGAAGTCAAAG-AAATC 804
| || | ||||||| |||||||||||||||||||||||||||||||||| |||| |||
Sbjct 363 AGAAGC-AGGGTTTGAGTTGGATTGGTTGGAGAAGAAACTTGATGAAGT-AAAGGAAAAG 420
Query 805 AAGAAGAAA 813
|| ||||||
Sbjct 421 AAAAAGAAA 429
> Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996
Length=882
Score = 93.5 bits (50), Expect = 3e-18
Identities = 103/128 (80%), Gaps = 6/128 (5%)
Strand=Plus/Plus
Query 689 CTCAGGAACACTCCACA-CATGATCTGTCTGATGCAGAAGGTGCTCTGGCATACATGA-A 746
|||| |||| ||||| | ||| ||| | |||||| | | ||| ||| |||| ||| |
Sbjct 623 CTCAAGAACTCTCCA-ATGATGGTCTCTTTGATGCGGGCGCTGCACTGTCATATTTGAGA 681
Query 747 AAATCTAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACTTGATGAAGTCAAAG-AAATCA 805
|| | ||||||||||||||||||||||||||||||||||| |||||| |||| ||| |
Sbjct 682 GAAGC-AGGGTTTAAGTTGGATTGGTTGGAGAAGAAACTTGGTGAAGT-AAAGGAAAAGA 739
Query 806 AGAAGAAA 813
||||||||
Sbjct 740 AGAAGAAA 747
> Ahg486280 jgi|Araly1|486280|fgenesh2_kg.5__2272__AT3G58270.1
Length=1246
Score = 76.8 bits (41), Expect = 3e-13
Identities = 101/129 (78%), Gaps = 7/129 (5%)
Strand=Plus/Plus
Query 1 ATGGGGAATCCAGTCGATAACAAGTTCACTTGGGTGATTAAGAATTTTTGTTCTGTG-AG 59
|||||||| ||| |||||||||||||||||||||||||||||||| | ||| | |
Sbjct 72 ATGGGGAAAGAAGTTGATAACAAGTTCACTTGGGTGATTAAGAATTTCTCCTCTCAGCAA 131
Query 60 CCC-CAAGCCCATTTATTCAGATCAATTCTT-GATTGGTGGCAACAAATGGCATATTCTG 117
|| ||| |||||||| ||| ||||||| | | | |||| |||||||| | |||||
Sbjct 132 TCCACAAAA--ATTTATTCGGATGAATTCTTCG-TCGATGGCTGCAAATGGCGTCTTCTG 188
Query 118 GCCTATTCC 126
|||| ||||
Sbjct 189 GCCT-TTCC 196
> Ahg896922 jgi|Araly1|896922|Al_scaffold_0005_888
Length=921
Score = 60.2 bits (32), Expect = 3e-08
Identities = 38/41 (93%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAATCCAGTCGATAACAAGTTCACTTGGGTGATTAA 41
||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAATTTAGTCGATAACAAGTTCACTTGGGTGATTAA 41
> Ahg336568 jgi|Araly1|336568|fgenesh1_pg.C_scaffold_1003133
Length=849
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 757 TTTAAGTTGGATTGGTTGGAGAAGAAACT 785
|||||||||||||||||||||||||||||
Sbjct 700 TTTAAGTTGGATTGGTTGGAGAAGAAACT 728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5