BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58250.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898777 jgi|Araly1|898777|Al_scaffold_0005_2743 1332 0.0
Ahg900503 jgi|Araly1|900503|Al_scaffold_0004_1153 211 7e-54
> Ahg898777 jgi|Araly1|898777|Al_scaffold_0005_2743
Length=957
Score = 1332 bits (721), Expect = 0.0
Identities = 885/963 (92%), Gaps = 15/963 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAATGATCAAGCTGATAAGAAGAAATTCAGTTGGGTCATTAAGAATTTCTCCTCT 60
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGGAATGATCAAGCTGATAAGAAGAAGTTCAGTTGGGTGATTAAGAATTTCTCCTCT 60
Query 61 TTGCAATCTGAGAAAATATACTCTGATCAGTTCGTGATTGACGGCTGCAGATGGCGTCTT 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGCAATCTGAGAAAATATATTCTGATCAGTTCGTGATTGACGGCTGCAGATGGCGTCTT 120
Query 121 TTGGCCTTTCCCAAGGGAAATGA-TACTAAATCTGATCATTTGTCTCTATATCTTGACGT 179
|||||||||||||||||||| | || |||||||||||||||||||||||||||||| ||
Sbjct 121 CTGGCCTTTCCCAAGGGAAAT-AGTATTAAATCTGATCATTTGTCTCTATATCTTGAAGT 179
Query 180 TGCTGAGTCTGAATCATTGCCTTGTGGATGGAGAAGACACGCACAGTTTTCCTTTACTAT 239
||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||
Sbjct 180 TGCTGAGTCTGAATCATTGCCTTGTGGATGGAGAAGACACGCACAATTTTTCTTCACCAT 239
Query 240 AGTAAATCACATTCCAGAAAAATGCTCTCAACGTAAAGAAACAATACACTGGTTTTGTGA 299
||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 AGTAAATCATATTCCAGGAAAATGCTCTCAACGTAGAGAAACAATACACTGGTTTTGTGA 299
Query 300 GAAAGTATCAGATTGGGGCTTCACAAACCTGGTTCCTCTTATTGAACTCAAGGCCGAAGA 359
||||||| ||||||||||||||||| || || ||||||||| || |||||||||| ||||
Sbjct 300 GAAAGTACCAGATTGGGGCTTCACAGACATGTTTCCTCTTAATGGACTCAAGGCCAAAGA 359
Query 360 TAGTGGATTTCTGGTGAAGGGCGAACTCAAAATAGTTGTTGAAATAGAGGTTCTT---G- 415
||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||| |
Sbjct 360 TAGCGGATTTCTTGTGAACGGCGACCTCAAAATAGTTGTTGAAATAGAGGTTCTTGAAGT 419
Query 416 A--AGTTATTGGCCTATTAAATGTGTCAGAATCAGAAAGCATGGATGTCAACGGGTTTCA 473
| |||||||||||||||||||||||||||| || | | ||||||||||||||||||||
Sbjct 420 ACTAGTTATTGGCCTATTAAATGTGTCAGAA--AGCATG-ATGGATGTCAACGGGTTTCA 476
Query 474 TGTTCTACCTTCCCAAGCGAAATATGTGAAGAGTTTGTTTGAAATACACCCAGACATTGC 533
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGTTCTACCTTCTCAAGTGAAATATGTGAAGAGTTTGTTTGAAATACACCCAGACATTGC 536
Query 534 AACAAAATTCCGTATAAAGAACCAATATCTGAAGACAGGATACATGAATGTGTTACTCTG 593
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 537 AACAAAATTCCGTATAAAGAACCAATATCTGAAGACAGGGTACATGAATGTCTTACTCAG 596
Query 594 CCTGATTGAGACTGTGCGCCGGTCACCTAAAGAAATCTCCAAGAATGATTTGGCCGATGC 653
||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 597 CCTGATTGAGACTGTGCGCCGGTCACCTAAAGAAATCTCCAAGGCTGATCTGGACGATGC 656
Query 654 ATATGTTGCATTGGAATCCTTGACTGATCATGGATTTAAGTTGGATTGGTTGAAGAAGAA 713
|||||||||| | |||||| |||||||| ||||||||||||| ||||| |||||||||||
Sbjct 657 ATATGTTGCACTAGAATCCCTGACTGATTATGGATTTAAGTTAGATTGATTGAAGAAGAA 716
Query 714 ACTTGATCAAGTGACACAAAAGAAGGAGAAAGAGGCAGCTGGTGAGACTCGGATGCAT-G 772
||||||||||||| || ||||||| |||||||||| ||||||||||||||||| | | |
Sbjct 717 ACTTGATCAAGTGTCAGAAAAGAAAGAGAAAGAGGAAGCTGGTGAGACTCGGA-GAAAAG 775
Query 773 AAATTGGGGAAGAGTTGAAGGATTTGAAGCTGAAGTGTTCAGACCTCGAAGCTCAGT-TG 831
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 776 AAATTGAGGAAGAGTTGAAGGATTTGAAGCTGAAGTGTTCAGGGCTCGAAGCTCA-TCTG 834
Query 832 GATAAAGTGAAGTGGAAGTGTTCAGACCTCGAAGCTCAGTTGGTGAAGGAAAAGGCAGAT 891
|| || |||||| |||||||||||||||||||||||| |||| || || ||||||||||
Sbjct 835 GAGAAGGTGAAGCGGAAGTGTTCAGACCTCGAAGCTCGGTTGTTGGAGCAAAAGGCAGAG 894
Query 892 GTTTTGGCTGCCATAGCTCCACTCGGGTCGTCTGATGACGGTGTATTTGATGACtttttt 951
|||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||
Sbjct 895 GTTTTGGCTGCCATAGCTCCACTCTCGTCTTCTGATGATGGTGTTTTTGATGACTTTTTT 954
Query 952 tGA 954
|||
Sbjct 955 TGA 957
> Ahg900503 jgi|Araly1|900503|Al_scaffold_0004_1153
Length=312
Score = 211 bits (114), Expect = 7e-54
Identities = 169/195 (87%), Gaps = 5/195 (3%)
Strand=Plus/Plus
Query 740 AGAAAGAGGCAGCTGGTGAGACTC-GGATG-CATGAAATTGGGGAAGAGTTGAAGGATTT 797
||||||||| |||||||||||||| ||| | | ||||||| ||||||||||||||||||
Sbjct 25 AGAAAGAGGAAGCTGGTGAGACTCGGGA-GAAAAGAAATTGAGGAAGAGTTGAAGGATTT 83
Query 798 GAAGCTGAAGTGTTCA-GACCTCGAAGCTCAGTTGGATAAAGTGAAGTGGAAGTGTTCAG 856
|||||||||||||||| | | || || |||| ||||| || |||||| | ||||||||||
Sbjct 84 GAAGCTGAAGTGTTCAAGGC-TCAAAACTCATTTGGAGAAGGTGAAGCGAAAGTGTTCAG 142
Query 857 ACCTCGAAGCTCAGTTGGTGAAGGAAAAGGCAGATGTTTTGGCTGCCATAGCTCCACTCG 916
||||||||||||| || || | ||||||||| | ||||||||||||||||||||||||
Sbjct 143 ACCTCGAAGCTCAACTGTTGGACGAAAAGGCAAAGGTTTTGGCTGCCATAGCTCCACTCT 202
Query 917 GGTCGTCTGATGACG 931
||||||||||||||
Sbjct 203 CGTCGTCTGATGACG 217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5