BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58260.1
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938815 jgi|Araly1|938815|scaffold_503006.1 1090 0.0
Ahg938818 jgi|Araly1|938818|scaffold_503009.1 470 1e-131
> Ahg938815 jgi|Araly1|938815|scaffold_503006.1
Length=1055
Score = 1090 bits (590), Expect = 0.0
Identities = 693/741 (94%), Gaps = 14/741 (2%)
Strand=Plus/Plus
Query 226 CTTGATTGCCAAGACTCTTCATCTAGATCAAT-GGGAAAGCAAATAAATAACACGTTCAC 284
|||||||||||||||||||||||||||||||| || |||||| | ||||||||||||||
Sbjct 318 CTTGATTGCCAAGACTCTTCATCTAGATCAATAAGG-AAGCAAGTTAATAACACGTTCAC 376
Query 285 TTGGGTGATTAAGAATCTCTCCACTCTGCAAGGTCTTGAAGTTCGTTCTAAAATTTTCGT 344
|||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||
Sbjct 377 TTGGGTGATTAAGAATGTCTCCACTCTGCAAGGTCAGGAAGTTCGTTCTGAAATTTTCGT 436
Query 345 TGTTGGTGGCTGCAAGTGGCGTCTTATTGCCTATCCAGAAGTTAACGATGCCGATGGTTA 404
||||||||||||||| |||||||| ||||||||||||||||||||| ||| ||||||||
Sbjct 437 TGTTGGTGGCTGCAAATGGCGTCTAATTGCCTATCCAGAAGTTAACAATGTTGATGGTTA 496
Query 405 CTTGTCTTTGTCTGTGTATCTGGGCGTTCCTGATTGTTGTGAGTCTTTGCCTTCTGGATG 464
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 497 CTTGTCTTTGTCTGTGTATCTGGACGTTCCTGATTGTTGTGAGTCTTTGCCTTCTGGATG 556
Query 465 GAAAAGGCATGCAAAGTTTTCCCTAACTATAGTTAATCAACTTTCAGAAGGACTCTCCCA 524
||||||||||||||| ||||||||||||||||| |||||| ||||||||| | |||||||
Sbjct 557 GAAAAGGCATGCAAAATTTTCCCTAACTATAGTAAATCAAATTTCAGAAGAATTCTCCCA 616
Query 525 AGTGCAAGAAACACAAGC-GTGGTTTGATGAGAACGCTCCTGGATGGGGTTTTCCACCAA 583
| |||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 617 ACTGCAAGAAACACAA-CAGTGGTTTGATCAGAACGCTCCTGGATGGGGTTTTCCACCAA 675
Query 584 TGCTAAACCTTAAAGATGTTTCTGACAAATATGGTGGATTCCTGGTGAACGACGAAGTCA 643
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 676 TGCTAAACCTTAAAGATGTTTCTGACAAACATGGTGGATTCCTGGTGAACGACGAAGTCA 735
Query 644 TGGTTGCTGTTGCGGTAGATGTTATTGAAGTTGTTGGTTCATTAGATGCACCAGAGATGT 703
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||
Sbjct 736 TGGTTGCTGTTGCGGTAGATGTTCTTGAAGTTGTTGGCTCATTAGATGCACCAGAGAAGT 795
Query 704 CTGAGAGCATGGATATCAAAGGGTTTAAAGTTCTTCCTTCACAGG-TGAAATCTGTGAAC 762
|||| ||||||||||||||||||||| |||||||||||||||||| || |||||||||||
Sbjct 796 CTGAAAGCATGGATATCAAAGGGTTTCAAGTTCTTCCTTCACAGGTTG-AATCTGTGAAC 854
Query 763 CGTTTGTTTGAGAGTCACCCAGACATTGCATCAAAGTTCAGTATAAAGAACCAATCTTTG 822
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 CGTTTGTTTGAGAGACACCCAGACATTGCATCAAAGTTCAGTATAAAGAACCAATCTTTG 914
Query 823 AAGACAGCGTACATGAATGTCCTACTCTGCTTGGCCGAGACTCTGCACCAATCGCCTATG 882
||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| |
Sbjct 915 AAGACAGCGTACATGAATGTCCTACTCTGCTTGAACGAGACTCTGCACCAGTCACCTAAG 974
Query 883 GAAATCTCCGAGGATGATCTGTCTGATGC-G--A----AAA-CTACTCTGGCCTACATGA 934
||||||||||||||||||||||||||||| | | ||| |||||||||||||||| |
Sbjct 975 GAAATCTCCGAGGATGATCTGTCTGATGCCGTGATGCGAAAACTACTCTGGCCTACATAA 1034
Query 935 AAAGTGTAGGATTTAAGCTGG 955
||| |||||||||||||||||
Sbjct 1035 AAAATGTAGGATTTAAGCTGG 1055
> Ahg938818 jgi|Araly1|938818|scaffold_503009.1
Length=963
Score = 470 bits (254), Expect = 1e-131
Identities = 301/324 (93%), Gaps = 2/324 (1%)
Strand=Plus/Plus
Query 236 AAGACTCTTCATCTAGATCAATGGGAAAGCAAATAAATAACACGTTCACTTGGGTGATTA 295
||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||
Sbjct 1 AAGACTCTTCATCTAGATCAATGGGGAAGCAAGTTAATAACACGTTCACTTGGGTGATTA 60
Query 296 AGAATCTCTCCACTCTGCAAGGTCTTGAAGTTCGTTCTAAAATTTTCGTTGTTGGTGGCT 355
||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 61 AGAATGTCTCCACTCTGCAAGGTCAGGAAGTTCGTTCTGAAATTTTCGTTGTTGGTGGCT 120
Query 356 GCAAGTGGCGTCTTATTGCCTATCCAGAAGTTAACGATGCCGATGGTTACTTGTCTTTGT 415
|||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 121 GCAAATGGCGTCTTATTGCCTATCCAGAAGTTAACAATGTTGATGGTTACTTGTCTTTGT 180
Query 416 CTGTGTATCTGGGCGTTCCTGATTGTTGTGAGTCTTTGCCTTCTGGATGGAAAAGGCATG 475
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGTGTATCTGGACGTTCCTGATTGTTGTGAGTCTTTGCCTTCTGGATGGAAAAGGCATG 240
Query 476 CAAAGTTTTCCCTAACTATAGTTAATCAACTTTCAGAAGGACTCTCCCAAGTGCAAGAAA 535
|||| ||||||||||||||||| |||||| ||||||||| |||||||||| ||||||||
Sbjct 241 CAAAATTTTCCCTAACTATAGTAAATCAAATTTCAGAAGAACTCTCCCAACTGCAAGAAG 300
Query 536 CACAAGCG-TGGTTTGATGAGAAC 558
| ||| |||||||||||||||
Sbjct 301 GATG-GCGCTGGTTTGATGAGAAC 323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45595008732
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5