BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G58260.1 Length=1221 Score E Sequences producing significant alignments: (Bits) Value Ahg938815 jgi|Araly1|938815|scaffold_503006.1 1090 0.0 Ahg938818 jgi|Araly1|938818|scaffold_503009.1 470 1e-131 > Ahg938815 jgi|Araly1|938815|scaffold_503006.1 Length=1055 Score = 1090 bits (590), Expect = 0.0 Identities = 693/741 (94%), Gaps = 14/741 (2%) Strand=Plus/Plus Query 226 CTTGATTGCCAAGACTCTTCATCTAGATCAAT-GGGAAAGCAAATAAATAACACGTTCAC 284 |||||||||||||||||||||||||||||||| || |||||| | |||||||||||||| Sbjct 318 CTTGATTGCCAAGACTCTTCATCTAGATCAATAAGG-AAGCAAGTTAATAACACGTTCAC 376 Query 285 TTGGGTGATTAAGAATCTCTCCACTCTGCAAGGTCTTGAAGTTCGTTCTAAAATTTTCGT 344 |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||| Sbjct 377 TTGGGTGATTAAGAATGTCTCCACTCTGCAAGGTCAGGAAGTTCGTTCTGAAATTTTCGT 436 Query 345 TGTTGGTGGCTGCAAGTGGCGTCTTATTGCCTATCCAGAAGTTAACGATGCCGATGGTTA 404 ||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||| Sbjct 437 TGTTGGTGGCTGCAAATGGCGTCTAATTGCCTATCCAGAAGTTAACAATGTTGATGGTTA 496 Query 405 CTTGTCTTTGTCTGTGTATCTGGGCGTTCCTGATTGTTGTGAGTCTTTGCCTTCTGGATG 464 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 497 CTTGTCTTTGTCTGTGTATCTGGACGTTCCTGATTGTTGTGAGTCTTTGCCTTCTGGATG 556 Query 465 GAAAAGGCATGCAAAGTTTTCCCTAACTATAGTTAATCAACTTTCAGAAGGACTCTCCCA 524 ||||||||||||||| ||||||||||||||||| |||||| ||||||||| | ||||||| Sbjct 557 GAAAAGGCATGCAAAATTTTCCCTAACTATAGTAAATCAAATTTCAGAAGAATTCTCCCA 616 Query 525 AGTGCAAGAAACACAAGC-GTGGTTTGATGAGAACGCTCCTGGATGGGGTTTTCCACCAA 583 | |||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| Sbjct 617 ACTGCAAGAAACACAA-CAGTGGTTTGATCAGAACGCTCCTGGATGGGGTTTTCCACCAA 675 Query 584 TGCTAAACCTTAAAGATGTTTCTGACAAATATGGTGGATTCCTGGTGAACGACGAAGTCA 643 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 676 TGCTAAACCTTAAAGATGTTTCTGACAAACATGGTGGATTCCTGGTGAACGACGAAGTCA 735 Query 644 TGGTTGCTGTTGCGGTAGATGTTATTGAAGTTGTTGGTTCATTAGATGCACCAGAGATGT 703 ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || Sbjct 736 TGGTTGCTGTTGCGGTAGATGTTCTTGAAGTTGTTGGCTCATTAGATGCACCAGAGAAGT 795 Query 704 CTGAGAGCATGGATATCAAAGGGTTTAAAGTTCTTCCTTCACAGG-TGAAATCTGTGAAC 762 |||| ||||||||||||||||||||| |||||||||||||||||| || ||||||||||| Sbjct 796 CTGAAAGCATGGATATCAAAGGGTTTCAAGTTCTTCCTTCACAGGTTG-AATCTGTGAAC 854 Query 763 CGTTTGTTTGAGAGTCACCCAGACATTGCATCAAAGTTCAGTATAAAGAACCAATCTTTG 822 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 855 CGTTTGTTTGAGAGACACCCAGACATTGCATCAAAGTTCAGTATAAAGAACCAATCTTTG 914 Query 823 AAGACAGCGTACATGAATGTCCTACTCTGCTTGGCCGAGACTCTGCACCAATCGCCTATG 882 ||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| | Sbjct 915 AAGACAGCGTACATGAATGTCCTACTCTGCTTGAACGAGACTCTGCACCAGTCACCTAAG 974 Query 883 GAAATCTCCGAGGATGATCTGTCTGATGC-G--A----AAA-CTACTCTGGCCTACATGA 934 ||||||||||||||||||||||||||||| | | ||| |||||||||||||||| | Sbjct 975 GAAATCTCCGAGGATGATCTGTCTGATGCCGTGATGCGAAAACTACTCTGGCCTACATAA 1034 Query 935 AAAGTGTAGGATTTAAGCTGG 955 ||| ||||||||||||||||| Sbjct 1035 AAAATGTAGGATTTAAGCTGG 1055 > Ahg938818 jgi|Araly1|938818|scaffold_503009.1 Length=963 Score = 470 bits (254), Expect = 1e-131 Identities = 301/324 (93%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 236 AAGACTCTTCATCTAGATCAATGGGAAAGCAAATAAATAACACGTTCACTTGGGTGATTA 295 ||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| Sbjct 1 AAGACTCTTCATCTAGATCAATGGGGAAGCAAGTTAATAACACGTTCACTTGGGTGATTA 60 Query 296 AGAATCTCTCCACTCTGCAAGGTCTTGAAGTTCGTTCTAAAATTTTCGTTGTTGGTGGCT 355 ||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 61 AGAATGTCTCCACTCTGCAAGGTCAGGAAGTTCGTTCTGAAATTTTCGTTGTTGGTGGCT 120 Query 356 GCAAGTGGCGTCTTATTGCCTATCCAGAAGTTAACGATGCCGATGGTTACTTGTCTTTGT 415 |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 121 GCAAATGGCGTCTTATTGCCTATCCAGAAGTTAACAATGTTGATGGTTACTTGTCTTTGT 180 Query 416 CTGTGTATCTGGGCGTTCCTGATTGTTGTGAGTCTTTGCCTTCTGGATGGAAAAGGCATG 475 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTGTGTATCTGGACGTTCCTGATTGTTGTGAGTCTTTGCCTTCTGGATGGAAAAGGCATG 240 Query 476 CAAAGTTTTCCCTAACTATAGTTAATCAACTTTCAGAAGGACTCTCCCAAGTGCAAGAAA 535 |||| ||||||||||||||||| |||||| ||||||||| |||||||||| |||||||| Sbjct 241 CAAAATTTTCCCTAACTATAGTAAATCAAATTTCAGAAGAACTCTCCCAACTGCAAGAAG 300 Query 536 CACAAGCG-TGGTTTGATGAGAAC 558 | ||| ||||||||||||||| Sbjct 301 GATG-GCGCTGGTTTGATGAGAAC 323 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45595008732 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5