BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58270.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486280 jgi|Araly1|486280|fgenesh2_kg.5__2272__AT3G58270.1 1954 0.0
Ahg938817 jgi|Araly1|938817|scaffold_503008.1 824 0.0
Ahg898776 jgi|Araly1|898776|Al_scaffold_0005_2742 89.8 4e-17
> Ahg486280 jgi|Araly1|486280|fgenesh2_kg.5__2272__AT3G58270.1
Length=1246
Score = 1954 bits (1058), Expect = 0.0
Identities = 1188/1251 (95%), Gaps = 7/1251 (1%)
Strand=Plus/Plus
Query 1 ATCAAAGAAGTTTCCTTTAGAGCTTTTTCTCTCATTCTGTCTTCGTCTAAAAAGCTTGAT 60
|||||||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||||
Sbjct 1 ATCAAAGAAGTTTCCTTTAGAGATTTTTATCTGATTCTGTCTTCGTCTATAAAGCTTGAT 60
Query 61 TGCAGATAACAATGGGGAAAGAAGTTGATAACAAGTTCACTTGGGTGATTAAGAATTTCT 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGCAGAGAACAATGGGGAAAGAAGTTGATAACAAGTTCACTTGGGTGATTAAGAATTTCT 120
Query 121 CCTCTCAGCAGTCCAGGAAAAA-TTATTCTGATGAATTCTTCGTCGATGGCTGCAAATGG 179
|||||||||| |||| ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 121 CCTCTCAGCAATCCA-CAAAAATTTATTCGGATGAATTCTTCGTCGATGGCTGCAAATGG 179
Query 180 CGTCTTCTGGCCTTTCCTAAAGGAAATGGTGTTGAGAAGTTGTCACTGTATCTGGCCGTT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGTCTTCTGGCCTTTCCTAAAGGAAATGGTGTTGAGAAGTTGTCACTGTATCTGGCCGTT 239
Query 240 GCTGGTAGTGAATTTTTACCTGATGGATGGAGAAGACACGCATATTTCCACTTCAGTGTA 299
|||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||
Sbjct 240 GCTGGTGGTGAATTTTTACCTGATGGATGGAGAAGACACGCAGATATCCACTTAAGTGTA 299
Query 300 GTGAATCAACTCTCTGATGAACTCTCTC-AAGCTAGAGAAACAAAAAATTGGTTTGATGC 358
||||||||||||||||| |||||||||| || ||||||||||| || ||| |||||||||
Sbjct 300 GTGAATCAACTCTCTGAAGAACTCTCTCTAA-CTAGAGAAACAGAACATTTGTTTGATGC 358
Query 359 GAGTACTAGTGACTGGGGTTTTACATCAATGCTTTCCCTTAAAAAACTTCATGACAAAGA 418
||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 359 GAGTACTTGCGACTGGGGTTTTGCATCAATGTTTTCCCTTAAAAAACTTCATGACAAAGA 418
Query 419 TGGTGGATTCCTGGTTAATGGAGAGCTCAAGATTGTTGTCGATGTTTCTGTTCTTGAAGT 478
|||||| ||||||||||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 419 TGGTGGTTTCCTGGTTAATGGAGAGCTCAAGATTATTGTCGAGGTATCTGTTCTTGAAGT 478
Query 479 TATTGGCAAATTAGACGTACCAGTGGAATCTGAAGAGACAACCACCAAAGCTCTAAGCGA 538
||||||||||||||||||||||| ||||| ||||||||| | |||||| |||||||| |
Sbjct 479 TATTGGCAAATTAGACGTACCAGAGGAATGTGAAGAGAC-A--ACCAAATCTCTAAGCAA 535
Query 539 GCTAGAGGAAAATGACGTACCAGAGGAATCTGAAGAGACAACTAAAGCTCTAAGCAAGGT 598
| | || || ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 536 GGTTGACGATAATGACGTACCAGAGGAATCTGAAGAGACGACCGAAGCTCTAAGCAAGGT 595
Query 599 AGACGAAAACGATGGTGCAGAGTCTAATGATTCGCTCAAGGAAGCTTCATCAGTAAAGGA 658
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AGTTGAAAATGATGGTGCAGAGTCTAATGATTCGCTCAAGGAAGCTTCATCAGTAAAGGA 655
Query 659 AAGCATGGATGTTAATGGCTTTCGAGTTCTTCCTTCACAGGTGGAAACTGTGAGCTGTAT 718
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AAGCATGGATGTCAATGGCTTTCGAGTTCTTCCTTCACAGGTGGAAACTGTGAGCTGTAT 715
Query 719 ATTTGAAAGACACCCCGACATAGCATCAGAGTTCGGTCCAAAGAATCAGCATCTGAGGTC 778
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 716 ATTTGAAAGACACCCCGACATAGCATCAGAGTTCAGTCCAAAGAATCAGCATCTGAGGTC 775
Query 779 AGCTTACATGAACGTCCTTCTCAGCCTAATCAAGACTATGTGCCAGTCGACTCAGGAACT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AGCTTACATGAACGTCCTTCTCAGCCTAATCAAGACTATGTGCCAGTCGACTCAGGAACT 835
Query 839 TTCCAAGGATGATCTGTCAGACGCAGATGCTGCTCTTGCATACTTGACGGATGCGGGGTT 898
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 836 TTCCAAGGATGATCTGTCAGACGCAGATGCTGCTCTTGCATACTTGACAGATGCAGGGTT 895
Query 899 GAATCTAAATTGGTTGGAGGAGAAACTGGAAGAAGTGTCAGAAAAGAAGGAGAACGAGGA 958
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 896 GAATCTAAATTGGTTGGAGGAGAAACTGGAAGAGGTGTCAGAAAAGAAGGAGAACGAGGA 955
Query 959 AGCTGGTGAGACTCGGGTGCATGAAATTGAAGAAGAGTTGAAGGAATTAAAGCTGAAGTG 1018
||||||||||||||||||||||||||| || |||||||||||||| || ||| |||||||
Sbjct 956 AGCTGGTGAGACTCGGGTGCATGAAATAGAGGAAGAGTTGAAGGAGTTGAAGTTGAAGTG 1015
Query 1019 CTCAAACCTGGAAGCTCAGCTGGAGAAGGAGAAAGCAGATGTGTCTGTGGCCAGAGCTCC 1078
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1016 CTCAAACCTGGAAGCTCAGCTGGGGAAGGAGAAAGCAAATGTGTCTGTGGCCAGAGCTCC 1075
Query 1079 TTTCTCCTTCGATGATATTGTTTAATGGCTTCAGTATTCAGATTCCTTCTTATAGTTCTG 1138
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TTTCTCGTTCGATGATGTTGTTTAATGGCTTCAGTATTCAGATTCCTTCTTATAGTTCTG 1135
Query 1139 TTTGGTGTTTTAGTCCTCTTGAAACTCTGCAAGATAAGTGGCTTAGGTTGGATGTTTCCG 1198
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TTTGGTGTGTTAGTCGTCTTGAAACTCTGCAAGATAAGTGGCTTAGGTTGGATGTTTCCG 1195
Query 1199 CATTTTGTGGCTCTTGACTCGTTAGGTTTCTTTAATCCAGTGTGTTTCTTG 1249
|||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1196 CATTTTGTGGTTCTTGACTCGTTAGGTTTCTTTAATCCAATGTGTTTCTTG 1246
> Ahg938817 jgi|Araly1|938817|scaffold_503008.1
Length=1019
Score = 824 bits (446), Expect = 0.0
Identities = 541/587 (92%), Gaps = 5/587 (1%)
Strand=Plus/Plus
Query 545 GGAAAA-T-GACGTACCAGAGGAATCTGAAGAGACAACTAAAGCTCTAAGCAAGGTAGAC 602
|||||| | |||||||||| | ||| |||||||||||| |||| ||||||||| |||||
Sbjct 433 GGAAAATTAGACGTACCAGCGAAATGTGAAGAGACAACCAAAGTTCTAAGCAATGTAGAG 492
Query 603 GAAAACGATGGTGCAGAG---TCTAATGATTCGCTCAAGGAAGCTTCATCAGTAAAGGAA 659
||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 493 GAAAATGATGGTGCAGAGTCTTCTAATGATTCACTCAAGGAAGCTTCATCAGTAAAAGAA 552
Query 660 AGCATGGATGTTAATGGCTTTCGAGTTCTTCCTTCACAGGTGGAAACTGTGAGCTGTATA 719
||||| ||||| || |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 553 AGCATAGATGTCAACGGCTTTCGAGTTCTTCCTTCACAGGTGGAAACTGTGAGCTTTATA 612
Query 720 TTTGAAAGACACCCCGACATAGCATCAGAGTTCGGTCCAAAGAATCAGCATCTGAGGTCA 779
|||||||||||||||||||| || ||||||||| |||||| |||||||||| ||||||||
Sbjct 613 TTTGAAAGACACCCCGACATTGCGTCAGAGTTCCGTCCAAGGAATCAGCATTTGAGGTCA 672
Query 780 GCTTACATGAACGTCCTTCTCAGCCTAATCAAGACTATGTGCCAGTCGACTCAGGAACTT 839
||||||||||| ||||| ||||||||||| |||| ||||||| |||||||||||||||
Sbjct 673 GCTTACATGAATGTCCTCCTCAGCCTAATTGAGACGCTGTGCCAATCGACTCAGGAACTT 732
Query 840 TCCAAGGATGATCTGTCAGACGCAGATGCTGCTCTTGCATACTTGACGGATGCGGGGTTG 899
||||||||||||||| |||||||||| |||||||||||||||||||| || || ||||||
Sbjct 733 TCCAAGGATGATCTGGCAGACGCAGACGCTGCTCTTGCATACTTGACAGACGCAGGGTTG 792
Query 900 AATCTAAATTGGTTGGAGGAGAAACTGGAAGAAGTGTCAGAAAAGAAGGAGAACGAGGAA 959
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 793 AATCTGAATTGGTTGGAAGAGAAACTGGAAGAAGTATCAGAAAAGAAGGAGAACGAGGAA 852
Query 960 GCTGGTGAGACTCGGGTGCATGAAATTGAAGAAGAGTTGAAGGAATTAAAGCTGAAGTGC 1019
|||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||
Sbjct 853 GCTGGTGAGACTCGGGTGCAAGAAATAGAGGAAGAGTTGAAGGAATTGAAGCTGAAGTGC 912
Query 1020 TCAAACCTGGAAGCTCAGCTGGAGAAGGAGAAAGCAGATGTGTCTGTGGCCAGAGCTCCT 1079
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 913 TCAAACCTGGAAGCTCAGCTGGAGAAGGAGAAAGCAAATGTGTCTGTGGCCAGAGCTCCT 972
Query 1080 TTCTCCTTCGATGATATTGTTTAATGGCTTCAGTATTCAGATTCCTT 1126
||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 973 TTCTCGTTCGATGATGTTGTTTAATGGCTTCAGTATTCAGATTCCTT 1019
Score = 617 bits (334), Expect = 5e-176
Identities = 452/507 (89%), Gaps = 15/507 (3%)
Strand=Plus/Plus
Query 53 AGCTTGATTGCAGATAACAATGGGGAAAGAAGTTGATAACAAGTTCACTTGGGTGATTAA 112
|||||||| ||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 3 AGCTTGATCGCAGAGAACAATGGGGAAAGAAGTTGATAAGAAGTTCACTTGGTTGATTAA 62
Query 113 GAATTTCTCCTCTCAGCAGTCCAGGAAAAA-TTATTCTGATGAATTCT-TCGTCGATGGC 170
|||||||| ||||||||| |||| ||||| ||| ||||||||||| | ||||||| |||
Sbjct 63 GAATTTCTGCTCTCAGCAATCCA-CAAAAATTTACTCTGATGAATT-TGTCGTCGACGGC 120
Query 171 TGCAAATGGCGTCTTCTGGCCTTTCCTAAAGGAAATGGTGTTGAGAAGTTGTCACTGTAT 230
|||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 121 TGCAAATGGCGTCTTCTGGCCTTTCCTAAAGGAAATGGTGTTAAGCATTTGTCACTGTAT 180
Query 231 CTGGCCGTTGCTGGTAGTGAATTTTTACCTGATGGATGGAGAAGACACGCATATTTCCAC 290
|||| |||| |||||||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct 181 CTGGACGTTCCTGGTAGTCAATTTTTACCTGATGGATGGAGAAGACACGCAGATTTTCAC 240
Query 291 TTCAGTGTAGTGAATCAACTCTCTGATGAACTCTCTC-AAGCTAGAGAAACAAAA-AATT 348
|| |||||||||||||||| |||||| |||||||||| || | | || |||| || |||
Sbjct 241 TTAAGTGTAGTGAATCAACACTCTGAAGAACTCTCTCTAACCAA-AGCAACACAACAAT- 298
Query 349 GGTTTGATGCGAGTACTAGTGACTGGGGTTTTACATCAATGCTTTCCC-TTAAAAAACTT 407
|||||||||| | | || | ||||||||||||||||||||| |||||| |||| ||||||
Sbjct 299 GGTTTGATGCCACTGCTTGCGACTGGGGTTTTACATCAATG-TTTCCCCTTAACAAACTT 357
Query 408 CATGACAAAGATGGTGGATTCCTGGTTAATGGAGAGCTCAAGATTGTTGTCGATGTTTCT 467
||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || |||
Sbjct 358 CATGACAAAGATGGTGGATTCCTGGTTAACGGAGAGCTCAAGATTGTTGCCGAGGTATCT 417
Query 468 GTTCTTGAAGTTATTGGCAAATTAGACGTACCAGTGGAATCTGAAGAGACAACCACCAAA 527
||||||||||||||||| |||||||||||||||| | ||| |||||||||||||| ||
Sbjct 418 GTTCTTGAAGTTATTGGAAAATTAGACGTACCAGCGAAATGTGAAGAGACAACCA--AA- 474
Query 528 GCTCTAAGCGA-GCTAGAGGAAAATGA 553
| ||||||| | | |||||||||||||
Sbjct 475 GTTCTAAGCAATG-TAGAGGAAAATGA 500
> Ahg898776 jgi|Araly1|898776|Al_scaffold_0005_2742
Length=954
Score = 89.8 bits (48), Expect = 4e-17
Identities = 159/211 (75%), Gaps = 13/211 (6%)
Strand=Plus/Plus
Query 72 ATGGGGAAAGAAGTTGATAACAAGTTCACTTGGGTGATTAAGAATTTCTCCTCTCAGCAG 131
|||||||| ||| |||||||||||||||||||||||||||||||| | |||| | ||
Sbjct 1 ATGGGGAATCCAGTCGATAACAAGTTCACTTGGGTGATTAAGAATTTTTGCTCTGTG-AG 59
Query 132 -TCCAGGAAAAATTATTCTGATGAATTCTTCG-TCGATGGCTGCAAATGGCGTCTTCTGG 189
|||| | | |||||| ||| ||||||| | | | ||||| |||||||| | || |||
Sbjct 60 CTCCAAGCCCATTTATTCAGATCAATTCTT-GATTGGTGGCTACAAATGGCATATTTTGG 118
Query 190 CCTTTCCTAAAGGAAATG-G-TGTTGAG-AA-G-TTGTCACTGTATCTGGC-CGTTGCTG 243
||| ||| || | ||| | | || | | || | || | ||| |||||| | ||| ||
Sbjct 119 CCTATCCCAA-G-AAACGAGATGGTCATCAATGCTTTTGTCTGGATCTGGAAC-TTGTTG 175
Query 244 GTAGTGAATTTTTACCTGATGGATGGAGAAG 274
| ||||||| || ||| ||||||||||||
Sbjct 176 ATTGTGAATTCTTGCCTTCTGGATGGAGAAG 206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5