BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G58280.1 Length=951 Score E Sequences producing significant alignments: (Bits) Value Ahg898783 jgi|Araly1|898783|Al_scaffold_0005_2749 972 0.0 Ahg938818 jgi|Araly1|938818|scaffold_503009.1 963 0.0 > Ahg898783 jgi|Araly1|898783|Al_scaffold_0005_2749 Length=771 Score = 972 bits (526), Expect = 0.0 Identities = 678/749 (91%), Gaps = 19/749 (3%) Strand=Plus/Plus Query 109 GTTAATATGGAACTAATTCCATGTGGCTGGAGAAGATACGTGGAATT-TCGCA-TGACTA 166 |||||| |||||||| |||| | |||||||||||||||||||| ||| || | | |||| Sbjct 31 GTTAATTTGGAACTATTTCCTTCTGGCTGGAGAAGATACGTGG-ATTATC-AATTCACTA 88 Query 167 TAGTCAATCATATATCTCCGATA-CATT-CTGT-AGATAAAAAAGGATGGCGCTGGTTTG 223 ||||||||||||| ||| || | |||| || | | |||||||||||||| ||||||||| Sbjct 89 TAGTCAATCATATTTCTGGGA-ACCATTCCT-TCA-ATAAAAAAGGATGGGGCTGGTTTG 145 Query 224 ATGAGAACACTAAGAA--TTGGGGGTTTAAAGACATGATTCCCGCAGTCATCCTTAATAA 281 |||||||||| || || ||| || |||| |||||||||||||| | ||| ||||||||| Sbjct 146 ATGAGAACAC-AA-AAGTTTGCGGTTTTAGAGACATGATTCCCGTATTCAACCTTAATAA 203 Query 282 CGTAAATGTTGGGTTCTTGTTGAATGGGGAGATCACGATTATTGCTGAAGTTGAAGTTCA 341 | | || ||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 204 CATTCGTGGTGGATTCTTGTTGAATGGGGAGCTCACGATTATTGCTGAAGTTGAAGTTCA 263 Query 342 TGAATTTATTGACACGTTAAATGCATCACAAGTTGAAGAG--C-TTAGTGATGATTCCTC 398 |||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 264 TGAAATTATTGACACGTTAAATGCATCACAAGTTGAAGAGTACTTTAGTGATGATTCCTC 323 Query 399 TGAAGATTTGCAGAACAAAGATAATGTAACTATCGAAGTCAACGGCTTTCAGGTTCTTGA 458 ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 324 TGAAGATTTTCAGAACAAAGATAATGTAAATATCGAAGTAAACGGCTTTCAGGTTCTTGA 383 Query 459 TTCGCAGGTTGATCAGGTCAATGCAATCTTTGAGAAACATCCAGATCTCATATCGAATTT 518 |||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| Sbjct 384 TTCGCAGGTTGATCAGGTGAATGTAATCTTTGAGAAACATCCAGATCTCACGTCGAATTT 443 Query 519 CAGTTTGAAGAATCAACATATCAGGAATGCTTACATGCATGCTCTTCTTGACCTTA-CGA 577 || ||| |||||||||||||||| |||||||||||||||||||||||||||||| | | | Sbjct 444 CAATTTAAAGAATCAACATATCAAGAATGCTTACATGCATGCTCTTCTTGACCTAATC-A 502 Query 578 AGACACTGTCCAAATCTACTAAGGAACTCACAGTGGAAGACATGAACGAAGCAGACAATA 637 ||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| Sbjct 503 AGACACTGTCCAAATCTACTAAGGACCTCACCGTGGAAGACATGAACAAAGCAGACAATA 562 Query 638 CGATTACGGATCTGATTAAAGCAGGCTTGAACTTGGACTGGTTGCGTCAGAAGTTTGATC 697 || |||| |||||| | |||||||||||||||||||| ||||||||||| ||||| |||| Sbjct 563 CGCTTACTGATCTGGTAAAAGCAGGCTTGAACTTGGATTGGTTGCGTCATAAGTTGGATC 622 Query 698 AGGCTTTGGAAAAACAGATAGCTTACGACACACGGATCGGAGAACTCGAGAAACAGGTCA 757 ||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 623 AGGCTTTGGAAAAGCAGATAGATTACGACACACGGATCAGAGAACTCGAGAAACAGGTCA 682 Query 758 AGAAGCGAAAGCTGGCAGTGACAGAACTTGAAGCCGACCTGGAGAAAGAGAAAGCTGCAG 817 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 683 AGAAGCGAAAGTTGGCATTGACAGAACTTGAAGCCGACCTGGAGAAAGAGAAAGCTGCAG 742 Query 818 CTTCGGCTTCATTGATGTTGTTTGACTGA 846 |||| |||||||||||||||||||| ||| Sbjct 743 CTTCAGCTTCATTGATGTTGTTTGATTGA 771 > Ahg938818 jgi|Araly1|938818|scaffold_503009.1 Length=963 Score = 963 bits (521), Expect = 0.0 Identities = 618/665 (93%), Gaps = 5/665 (1%) Strand=Plus/Plus Query 206 AAGGATGGCGCTGGTTTGATGAGAACACTAAGAATTGGGGGTTTAAAGACATGATTCCCG 265 |||||||||||||||||||||||||||| |||| ||| || |||| |||||||||||||| Sbjct 298 AAGGATGGCGCTGGTTTGATGAGAACACAAAGATTTGCGGTTTTAGAGACATGATTCCCG 357 Query 266 CAGTCATCCTTAATAACGTAAATGTTGGGTTCTTGTTGAATGGGGAGATCACGATTATTG 325 ||||| |||| ||||| |||||| |||||||||||||||||||||| |||||||||||| Sbjct 358 TAGTCAACCTTCATAACATAAATGGTGGGTTCTTGTTGAATGGGGAGCTCACGATTATTG 417 Query 326 CTGAAGTTGAAGTTCATGAATTTATTGACACGTTAAATGCATCACAAGTTGAAGAG--C- 382 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 418 CTGAAGTTGAAGTTCATGAAATTATTGACACGTTAAATGCATCACAAGTTGAAGAGTACT 477 Query 383 TTAGTGATGATTCCTCTGAAGATTTGCAGAACAAAGATAATGTAACTATCGAAGTCAACG 442 ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| Sbjct 478 TTAGTGATGATTCCTCTGAAGATTTTCAGAACAAAGATAATGTAAATATCGAAGTAAACG 537 Query 443 GCTTTCAGGTTCTTGATTCGCAGGTTGATCAGGTCAATGCAATCTTTGAGAAACATCCAG 502 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 538 GCTTTCAGGTTCTTGATTCGCAGGTTGATCAGGTGAATGCAATCTTTGAGAAACATCCAG 597 Query 503 ATCTCATATCGAATTTCAGTTTGAAGAATCAACATATCAGGAATGCTTACATGCATGCTC 562 |||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||| Sbjct 598 ATCTCACGTCGAATTTCAATTTAAAGAATCAACATATCAAGAATGCTTACATGCATGCTC 657 Query 563 TTCTTGACCTTA-CGAAGACACTGTCCAAATCTACTAAGGAACTCACAGTGGAAGACATG 621 |||||||||| | | |||||||| | ||||||| ||||||| ||||| || ||||||||| Sbjct 658 TTCTTGACCTAATC-AAGACACTCTGCAAATCTCCTAAGGACCTCACCGTAGAAGACATG 716 Query 622 AACGAAGCAGACAATACGATTACGGATCTGATTAAAGCAGGCTTGAACTTGGACTGGTTG 681 ||| |||||||||||||| |||| |||||| | |||||||||||||||||||| |||||| Sbjct 717 AACAAAGCAGACAATACGCTTACTGATCTGGTAAAAGCAGGCTTGAACTTGGATTGGTTG 776 Query 682 CGTCAGAAGTTTGATCAGGCTTTGGAAAAACAGATAGCTTACGACACACGGATCGGAGAA 741 |||| ||||| ||||||||||||||||| ||||||| |||||||||||||||| ||||| Sbjct 777 AGTCATAAGTTGGATCAGGCTTTGGAAAAGCAGATAGATTACGACACACGGATCAGAGAA 836 Query 742 CTCGAGAAACAGGTCAAGAAGCGAAAGCTGGCAGTGACAGAACTTGAAGCCGACCTGGAG 801 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 CTCGAGAAACAGGTCAAGAAGCGAAAGCTGGCAGTGACAGAACTTGAAGCCGACCTGGAG 896 Query 802 AAAGAGAAAGCTGCAGCTTCGGCTTCATTGATGTTGTTTGACTGAGATTTTAAGATGAAG 861 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 897 AAAGAGAAAGCTGCAGCTTCGGCTTCATTGATATTGTTTGACTAAGATTTTAAGATGAAG 956 Query 862 TTGTG 866 ||||| Sbjct 957 TTGTG 961 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35301821142 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5