BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58280.1
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898783 jgi|Araly1|898783|Al_scaffold_0005_2749 972 0.0
Ahg938818 jgi|Araly1|938818|scaffold_503009.1 963 0.0
> Ahg898783 jgi|Araly1|898783|Al_scaffold_0005_2749
Length=771
Score = 972 bits (526), Expect = 0.0
Identities = 678/749 (91%), Gaps = 19/749 (3%)
Strand=Plus/Plus
Query 109 GTTAATATGGAACTAATTCCATGTGGCTGGAGAAGATACGTGGAATT-TCGCA-TGACTA 166
|||||| |||||||| |||| | |||||||||||||||||||| ||| || | | ||||
Sbjct 31 GTTAATTTGGAACTATTTCCTTCTGGCTGGAGAAGATACGTGG-ATTATC-AATTCACTA 88
Query 167 TAGTCAATCATATATCTCCGATA-CATT-CTGT-AGATAAAAAAGGATGGCGCTGGTTTG 223
||||||||||||| ||| || | |||| || | | |||||||||||||| |||||||||
Sbjct 89 TAGTCAATCATATTTCTGGGA-ACCATTCCT-TCA-ATAAAAAAGGATGGGGCTGGTTTG 145
Query 224 ATGAGAACACTAAGAA--TTGGGGGTTTAAAGACATGATTCCCGCAGTCATCCTTAATAA 281
|||||||||| || || ||| || |||| |||||||||||||| | ||| |||||||||
Sbjct 146 ATGAGAACAC-AA-AAGTTTGCGGTTTTAGAGACATGATTCCCGTATTCAACCTTAATAA 203
Query 282 CGTAAATGTTGGGTTCTTGTTGAATGGGGAGATCACGATTATTGCTGAAGTTGAAGTTCA 341
| | || ||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 204 CATTCGTGGTGGATTCTTGTTGAATGGGGAGCTCACGATTATTGCTGAAGTTGAAGTTCA 263
Query 342 TGAATTTATTGACACGTTAAATGCATCACAAGTTGAAGAG--C-TTAGTGATGATTCCTC 398
|||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 264 TGAAATTATTGACACGTTAAATGCATCACAAGTTGAAGAGTACTTTAGTGATGATTCCTC 323
Query 399 TGAAGATTTGCAGAACAAAGATAATGTAACTATCGAAGTCAACGGCTTTCAGGTTCTTGA 458
||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 324 TGAAGATTTTCAGAACAAAGATAATGTAAATATCGAAGTAAACGGCTTTCAGGTTCTTGA 383
Query 459 TTCGCAGGTTGATCAGGTCAATGCAATCTTTGAGAAACATCCAGATCTCATATCGAATTT 518
|||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct 384 TTCGCAGGTTGATCAGGTGAATGTAATCTTTGAGAAACATCCAGATCTCACGTCGAATTT 443
Query 519 CAGTTTGAAGAATCAACATATCAGGAATGCTTACATGCATGCTCTTCTTGACCTTA-CGA 577
|| ||| |||||||||||||||| |||||||||||||||||||||||||||||| | | |
Sbjct 444 CAATTTAAAGAATCAACATATCAAGAATGCTTACATGCATGCTCTTCTTGACCTAATC-A 502
Query 578 AGACACTGTCCAAATCTACTAAGGAACTCACAGTGGAAGACATGAACGAAGCAGACAATA 637
||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||
Sbjct 503 AGACACTGTCCAAATCTACTAAGGACCTCACCGTGGAAGACATGAACAAAGCAGACAATA 562
Query 638 CGATTACGGATCTGATTAAAGCAGGCTTGAACTTGGACTGGTTGCGTCAGAAGTTTGATC 697
|| |||| |||||| | |||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 563 CGCTTACTGATCTGGTAAAAGCAGGCTTGAACTTGGATTGGTTGCGTCATAAGTTGGATC 622
Query 698 AGGCTTTGGAAAAACAGATAGCTTACGACACACGGATCGGAGAACTCGAGAAACAGGTCA 757
||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 623 AGGCTTTGGAAAAGCAGATAGATTACGACACACGGATCAGAGAACTCGAGAAACAGGTCA 682
Query 758 AGAAGCGAAAGCTGGCAGTGACAGAACTTGAAGCCGACCTGGAGAAAGAGAAAGCTGCAG 817
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 AGAAGCGAAAGTTGGCATTGACAGAACTTGAAGCCGACCTGGAGAAAGAGAAAGCTGCAG 742
Query 818 CTTCGGCTTCATTGATGTTGTTTGACTGA 846
|||| |||||||||||||||||||| |||
Sbjct 743 CTTCAGCTTCATTGATGTTGTTTGATTGA 771
> Ahg938818 jgi|Araly1|938818|scaffold_503009.1
Length=963
Score = 963 bits (521), Expect = 0.0
Identities = 618/665 (93%), Gaps = 5/665 (1%)
Strand=Plus/Plus
Query 206 AAGGATGGCGCTGGTTTGATGAGAACACTAAGAATTGGGGGTTTAAAGACATGATTCCCG 265
|||||||||||||||||||||||||||| |||| ||| || |||| ||||||||||||||
Sbjct 298 AAGGATGGCGCTGGTTTGATGAGAACACAAAGATTTGCGGTTTTAGAGACATGATTCCCG 357
Query 266 CAGTCATCCTTAATAACGTAAATGTTGGGTTCTTGTTGAATGGGGAGATCACGATTATTG 325
||||| |||| ||||| |||||| |||||||||||||||||||||| ||||||||||||
Sbjct 358 TAGTCAACCTTCATAACATAAATGGTGGGTTCTTGTTGAATGGGGAGCTCACGATTATTG 417
Query 326 CTGAAGTTGAAGTTCATGAATTTATTGACACGTTAAATGCATCACAAGTTGAAGAG--C- 382
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 418 CTGAAGTTGAAGTTCATGAAATTATTGACACGTTAAATGCATCACAAGTTGAAGAGTACT 477
Query 383 TTAGTGATGATTCCTCTGAAGATTTGCAGAACAAAGATAATGTAACTATCGAAGTCAACG 442
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct 478 TTAGTGATGATTCCTCTGAAGATTTTCAGAACAAAGATAATGTAAATATCGAAGTAAACG 537
Query 443 GCTTTCAGGTTCTTGATTCGCAGGTTGATCAGGTCAATGCAATCTTTGAGAAACATCCAG 502
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 538 GCTTTCAGGTTCTTGATTCGCAGGTTGATCAGGTGAATGCAATCTTTGAGAAACATCCAG 597
Query 503 ATCTCATATCGAATTTCAGTTTGAAGAATCAACATATCAGGAATGCTTACATGCATGCTC 562
|||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 598 ATCTCACGTCGAATTTCAATTTAAAGAATCAACATATCAAGAATGCTTACATGCATGCTC 657
Query 563 TTCTTGACCTTA-CGAAGACACTGTCCAAATCTACTAAGGAACTCACAGTGGAAGACATG 621
|||||||||| | | |||||||| | ||||||| ||||||| ||||| || |||||||||
Sbjct 658 TTCTTGACCTAATC-AAGACACTCTGCAAATCTCCTAAGGACCTCACCGTAGAAGACATG 716
Query 622 AACGAAGCAGACAATACGATTACGGATCTGATTAAAGCAGGCTTGAACTTGGACTGGTTG 681
||| |||||||||||||| |||| |||||| | |||||||||||||||||||| ||||||
Sbjct 717 AACAAAGCAGACAATACGCTTACTGATCTGGTAAAAGCAGGCTTGAACTTGGATTGGTTG 776
Query 682 CGTCAGAAGTTTGATCAGGCTTTGGAAAAACAGATAGCTTACGACACACGGATCGGAGAA 741
|||| ||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||
Sbjct 777 AGTCATAAGTTGGATCAGGCTTTGGAAAAGCAGATAGATTACGACACACGGATCAGAGAA 836
Query 742 CTCGAGAAACAGGTCAAGAAGCGAAAGCTGGCAGTGACAGAACTTGAAGCCGACCTGGAG 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTCGAGAAACAGGTCAAGAAGCGAAAGCTGGCAGTGACAGAACTTGAAGCCGACCTGGAG 896
Query 802 AAAGAGAAAGCTGCAGCTTCGGCTTCATTGATGTTGTTTGACTGAGATTTTAAGATGAAG 861
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 897 AAAGAGAAAGCTGCAGCTTCGGCTTCATTGATATTGTTTGACTAAGATTTTAAGATGAAG 956
Query 862 TTGTG 866
|||||
Sbjct 957 TTGTG 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35301821142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5