BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58290.1
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324316 jgi|Araly1|324316|fgenesh1_pm.C_scaffold_5001860 1096 0.0
> Ahg324316 jgi|Araly1|324316|fgenesh1_pm.C_scaffold_5001860
Length=819
Score = 1096 bits (593), Expect = 0.0
Identities = 650/678 (96%), Gaps = 2/678 (0%)
Strand=Plus/Plus
Query 173 aaaaTAATGGTGATCACTTGTCTCTGTATCTGGAAGTTGATTTCGAATCATTGCCTTGTG 232
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 143 AAAATAATGGTGATCACTTGTCTCTGTATCTGGAAGTTGATTTCGAATCAATGCCTTGTG 202
Query 233 GATGGAGACAATATACACAATTTCGTTTTACGGTAGTAAATCAAATTTCAGAGCATTCAT 292
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 203 GATGGAGACAATATACACAATTTCGTTTTACGGTAGTTAATCAAATTTCAGAGCATTTAT 262
Query 293 CCGTAAAGAGAGAAGGACGAAAGTGGTTTGATAAGAAAGCTCCGGAATGGGGTTGGGAAG 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 CCGTAAAGAGAGAAGGACGAAAGTGGTTTGATAAGAAAGCTCCGGAATGGGGTTGGGAAG 322
Query 353 AGATGATATCTCTAACAAAACTTAATGATATAAATAGTGGGTTCGTGGTGAACGGAGAGC 412
| ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 323 ACATGATTTCTTTAACAAAACTTAATGATATAAATAGTGGGTTCTTGGTGAACGGAGAGC 382
Query 413 TCATGATTGTTGCTGAAGTAGAAACTTTTGAAGCTGTTAGCACATCACAAGTTGCAGCGG 472
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 383 TCATGATTGTTGCTGAAGTAGAAACTTTTGAAGCTATTAGCACATCACAAGTTGCAG-GG 441
Query 473 T-TCGTGATGATAGTGAATGGACACTTCTTGGCTATTACTCTTCATCTGAAGAGGACAAG 531
| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 442 ACTAGTGTTGATAGTGAATGGACACTTCTTGACTATTACTCTTCATCTGAAGAGGACAAG 501
Query 532 GATGATGTAACTGTTGTAGTCAAGGGCTTTCATGTTCTTGATTCGCAAGTTAATCAAGTG 591
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 502 GATGATGTAACTGTTGTAATCAAGGGCTTTCATGTTCTTGATTCGCAAGTTTATCAAGTG 561
Query 592 AAGGAAATCTTTGAGAAACATCCAGATCTCGCAACGAATTTGGTTTTAAAGAATCAAAAT 651
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 562 AAGGAAACCTTTGAGAAACATCCAGATCTCGCATCGAATTTGATTTTAAAGAATCAAAAT 621
Query 652 CTCAAGAATGTTTACATGGGTTTTCTTCTTGACTTAATCAAGACATTGAGCAAGTTGCCT 711
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 622 CTCAAGAATATTTACATGGGTTTTCTTCTTGACTTAATCAAGACATTGAGCAAGTCACCT 681
Query 712 AAGGAACTCACTGAGGAAGACTTAAACTTCGCCGACAGTACGCTTTCTGATCTGACAAAT 771
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 682 AAGGAACTCACTGAGGACGACTTAAACTTCGCTGACAGTACGCTTTCTGATCTGACAAAA 741
Query 772 GCAGGCTTCATGTTGGATTGGTTGCGTCTGAAGTTGAATAGGGCGTTGGAGAAACAAATA 831
|||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||
Sbjct 742 GCAGGCTTCATGTTGGATTGGTTGCGTCAGAAGTTGGATAGGGCTTTGGAGAAACAAATA 801
Query 832 GCTTGTGACGCAGGCTAA 849
||||||||||||||||||
Sbjct 802 GCTTGTGACGCAGGCTAA 819
Score = 257 bits (139), Expect = 8e-68
Identities = 155/163 (95%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 1 ATGACATCAATCATGAACCCATGTGATAAGAAGTTTGTTTGGGTTATAAAGAATTTTTCC 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACATCAATAATGAACCCATGTGATAAGAAGTTTGTTTGGGTTATAAAGAATTTTTCC 60
Query 61 TCTTTGCAATTACAAGATTGTTATGTTTCTGATCCGGTTCTGATCCATGACGTCAATTGG 120
||||| ||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||
Sbjct 61 TCTTTACAATTACAAGATTGTTATGTTTCTGTTCCAGTTCTGATCCGTGACGTCAAATGG 120
Query 121 CGTCTTTTTGCCTATCCGGAGGGAAGTAATGGTGATCACTTGT 163
|||||||||||||||||||||| || |||||||||||||||||
Sbjct 121 CGTCTTTTTGCCTATCCGGAGGAAAATAATGGTGATCACTTGT 163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31413283608
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5