BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G58300.1

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486283 jgi|Araly1|486283|fgenesh2_kg.5__2275__AT3G58300.1         671    0.0  


> Ahg486283 jgi|Araly1|486283|fgenesh2_kg.5__2275__AT3G58300.1
Length=498

 Score =  671 bits (363),  Expect = 0.0
 Identities = 413/438 (94%), Gaps = 0/438 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGAGGAACACAGAGGGTAGTGAATCTAGCGATGATGAACAGAGATACTCGTCTTCA  60
            |||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGAGGAAGACAGAGAGTAGTGAATCTAGCGATGATGAACAGAGATACTCGTCTTCA  60

Query  61   TCTGAAGAATGGTCGGAGGAGTCGTCAGAAGATGCTCATGAAATTGTTGAAGTCAATGGG  120
            |||||||||||||||||||| || ||||| |||| | |||||||||||||||||||||||
Sbjct  61   TCTGAAGAATGGTCGGAGGACTCCTCAGACGATGTTAATGAAATTGTTGAAGTCAATGGG  120

Query  121  TTTCAGATTCTTGATTCACAGGTAAGCCAAGTGAATGCAATCTTTGAAAAACATCCAGAC  180
            ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TTTCAAATTCTTGATTCGCAGGTAAGCCAAGTGAATGCAATCTTTGAAAAACATCCAGAC  180

Query  181  ATTGCATCGGACTTCAATTTAAAGAACCAACAGCTCAAAAATGCTTACATGGGTGTTCTT  240
            |||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATTGCATCAGATTTCAGTTTAAAGAACCAACAGCTCAAAAATGCTTACATGGGTGTTCTT  240

Query  241  CTTGACCTAATTATGACACTGTGCCGACCGCCTAAGGAGCTCACAATGGACGATCTAAAC  300
            || |||||||| ||||||||||||| | |||||||||||||||| ||| |||||||||||
Sbjct  241  CTCGACCTAATCATGACACTGTGCCAATCGCCTAAGGAGCTCACGATGAACGATCTAAAC  300

Query  301  AAAGCAGACCGCACGGTTTTGGATCTGACAAAAGCTGGCTTGAAGTTGCAATGGTTGCGT  360
            ||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||
Sbjct  301  AAAGCAGACCGCACGATTTTGGATCTGACAAAAGCTGGCTTGAGGTTGCATTGGTTGCGT  360

Query  361  CAGAAACTGGACGAAGCTTTCTTGAAGAAGGAGAAAAAACGGGACATTGGGGCACGGATC  420
            ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct  361  CAGAAACTGGACGAAGCTTTCTTGAAGAAGGAGAAAAAAAGAGCCATTGGGGCACGGATC  420

Query  421  AGAGAACTTGAGGAACAA  438
            ||||||||||||||||||
Sbjct  421  AGAGAACTTGAGGAACAA  438


 Score =  106 bits (57),  Expect = 2e-22
 Identities = 59/60 (98%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  487  AAACAGAAAGCTGCGGCTTTGGCAGCTGAAACTCCGTTTGATTTCAGCGATGTTGTTTGA  546
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  439  AAACAGAAAGCTGCGGCTTTGGCTGCTGAAACTCCGTTTGATTTCAGCGATGTTGTTTGA  498



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19917217458


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5