BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G58310.1 Length=777 Score E Sequences producing significant alignments: (Bits) Value Ahg348900 jgi|Araly1|348900|fgenesh1_pg.C_scaffold_5002292 1103 0.0 > Ahg348900 jgi|Araly1|348900|fgenesh1_pg.C_scaffold_5002292 Length=777 Score = 1103 bits (597), Expect = 0.0 Identities = 720/780 (92%), Gaps = 6/780 (1%) Strand=Plus/Plus Query 1 ATGTCTTCATCCTTCATACCAAAACGCATCGCTTTGGTCCTTAACTTGGCCATGGTAGCC 60 ||||||||||||| | || |||||||||||| ||||||||||||||||||| |||||||| Sbjct 1 ATGTCTTCATCCTCCGTATCAAAACGCATCGTTTTGGTCCTTAACTTGGCCGTGGTAGCC 60 Query 61 ATACAAGTCTTCTTTATACGCAGTGTTTCGTCCATGAACGAGACCAACTCATATCTATAC 120 | ||||||| || ||||||||| || |||||||||||| |||| ||| | ||||||||| Sbjct 61 ACACAAGTCCTCCCTATACGCAGCGTCTCGTCCATGAACAAGACTAACGCGTATCTATAC 120 Query 121 CACAAATGCTCCGAGGCTGAAGGGAAATACAAGTCC-AAGAGCCCGTACGAAGGAAACCT 179 ||||||||||| || |||||||||||||||| || |||||||||||||||| |||||| Sbjct 121 CACAAATGCTCTGAAATTGAAGGGAAATACAAG-CCGAAGAGCCCGTACGAAGAAAACCT 179 Query 180 CAACTTTCTCACCAATGACATGTATAAAGACACTTTTGTAAGAGGTTTTGTCTATGCCTA 239 |||||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 180 TAACTTTATCATCAATGACATGTATAAAGACACTTTTGTAAGAGGTTTCGTCTACGCCTA 239 Query 240 TCATGGTGACGATCCCAATACCGTCTACATCTTGCTCCAGTGCCGGGGTGACTCCTACGG 299 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 240 TCATGGTGACGATCCCAATACCGTCTATATCTTGCTCCAATGCCGGGGTGACTCCTACGG 299 Query 300 CTCC-AAGTGTGGTTCCTGCCTCTCCACTGCCACCTCCGAGCTGCGTAGAAGATGTCCTA 358 | || |||||||| ||||||||| | || ||| |||| ||||| |||||||||||||| | Sbjct 300 C-CCAAAGTGTGGCTCCTGCCTCACTACCGCCTCCTCGGAGCTACGTAGAAGATGTCCGA 358 Query 359 TGAACAAGGCGGGAATAGTATGGTTTGATAAATGTCTTCTCAAGATTTCTCCAACCGCTT 418 |||||||||||||||||||||||||||| || |||||||||||| |||||||||| |||| Sbjct 359 TGAACAAGGCGGGAATAGTATGGTTTGACAAGTGTCTTCTCAAGTTTTCTCCAACGGCTT 418 Query 419 TCTTCGAGAAGATCGATGACAAGAACAAGTTCTATATGTACAGCACAAAGAAAGTAAGCG 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TCTTCGAGAAGATCGATGACAAGAACAAGTTCTATATGTACAGCACAAAGAAAGTAAGCG 478 Query 479 ATCCAGCGTTGTTCAATGTGAAGACAAAGGCTCTACTCACTGAGCTGACCGC-AAAGGCT 537 |||| |||| |||||||| ||||||||| |||||||| |||||||||||| | |||| || Sbjct 479 ATCCGGCGTCGTTCAATGCGAAGACAAAAGCTCTACTAACTGAGCTGACCACGAAAG-CT 537 Query 538 ACTCGCAGATCAGATAAGTTATTGTTGTACGAGACAGGGGAGATGAAACTCGGGAAGATG 597 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 538 ACTCGTAGATCAGATAAGTTATTGTTGTACGAGACGGGGGAGATGAAACTCGGGAAGATG 597 Query 598 AAGCTTTACGGAATGGTGCAGTGTAGACGGGATTTATGGTTTACGGTTTGTAAGACGTGT 657 ||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 598 AAGCTGTACGGAATGGTGCAGTGTACACGGGACCTATGGTTTACGGTTTGTAAGACGTGT 657 Query 658 TTGGATAAGATTATAGGGGAGCTTCCTAAATGTTGTGATGGTAAAGAAGGAGGGAGAGTT 717 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 TTGGATAAGATTATTGGGGAGCTTCCTAAATGTTGTGATGGTAAAGAAGGAGGGAGAGTT 717 Query 718 TTGAGTGGGAGTTGTAACTTTAGATATGAGATTTACCCTTTTCTTGACACTGTTCGATGA 777 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 718 GTGAGTGGGAGTTGTAACTTTAGGTATGAGATTTACCCTTTTCTTGACACTGTTCGATGA 777 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28668433584 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5