BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58310.1
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348900 jgi|Araly1|348900|fgenesh1_pg.C_scaffold_5002292 1103 0.0
> Ahg348900 jgi|Araly1|348900|fgenesh1_pg.C_scaffold_5002292
Length=777
Score = 1103 bits (597), Expect = 0.0
Identities = 720/780 (92%), Gaps = 6/780 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTCATCCTTCATACCAAAACGCATCGCTTTGGTCCTTAACTTGGCCATGGTAGCC 60
||||||||||||| | || |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1 ATGTCTTCATCCTCCGTATCAAAACGCATCGTTTTGGTCCTTAACTTGGCCGTGGTAGCC 60
Query 61 ATACAAGTCTTCTTTATACGCAGTGTTTCGTCCATGAACGAGACCAACTCATATCTATAC 120
| ||||||| || ||||||||| || |||||||||||| |||| ||| | |||||||||
Sbjct 61 ACACAAGTCCTCCCTATACGCAGCGTCTCGTCCATGAACAAGACTAACGCGTATCTATAC 120
Query 121 CACAAATGCTCCGAGGCTGAAGGGAAATACAAGTCC-AAGAGCCCGTACGAAGGAAACCT 179
||||||||||| || |||||||||||||||| || |||||||||||||||| ||||||
Sbjct 121 CACAAATGCTCTGAAATTGAAGGGAAATACAAG-CCGAAGAGCCCGTACGAAGAAAACCT 179
Query 180 CAACTTTCTCACCAATGACATGTATAAAGACACTTTTGTAAGAGGTTTTGTCTATGCCTA 239
|||||| ||| |||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 180 TAACTTTATCATCAATGACATGTATAAAGACACTTTTGTAAGAGGTTTCGTCTACGCCTA 239
Query 240 TCATGGTGACGATCCCAATACCGTCTACATCTTGCTCCAGTGCCGGGGTGACTCCTACGG 299
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 240 TCATGGTGACGATCCCAATACCGTCTATATCTTGCTCCAATGCCGGGGTGACTCCTACGG 299
Query 300 CTCC-AAGTGTGGTTCCTGCCTCTCCACTGCCACCTCCGAGCTGCGTAGAAGATGTCCTA 358
| || |||||||| ||||||||| | || ||| |||| ||||| |||||||||||||| |
Sbjct 300 C-CCAAAGTGTGGCTCCTGCCTCACTACCGCCTCCTCGGAGCTACGTAGAAGATGTCCGA 358
Query 359 TGAACAAGGCGGGAATAGTATGGTTTGATAAATGTCTTCTCAAGATTTCTCCAACCGCTT 418
|||||||||||||||||||||||||||| || |||||||||||| |||||||||| ||||
Sbjct 359 TGAACAAGGCGGGAATAGTATGGTTTGACAAGTGTCTTCTCAAGTTTTCTCCAACGGCTT 418
Query 419 TCTTCGAGAAGATCGATGACAAGAACAAGTTCTATATGTACAGCACAAAGAAAGTAAGCG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCTTCGAGAAGATCGATGACAAGAACAAGTTCTATATGTACAGCACAAAGAAAGTAAGCG 478
Query 479 ATCCAGCGTTGTTCAATGTGAAGACAAAGGCTCTACTCACTGAGCTGACCGC-AAAGGCT 537
|||| |||| |||||||| ||||||||| |||||||| |||||||||||| | |||| ||
Sbjct 479 ATCCGGCGTCGTTCAATGCGAAGACAAAAGCTCTACTAACTGAGCTGACCACGAAAG-CT 537
Query 538 ACTCGCAGATCAGATAAGTTATTGTTGTACGAGACAGGGGAGATGAAACTCGGGAAGATG 597
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 538 ACTCGTAGATCAGATAAGTTATTGTTGTACGAGACGGGGGAGATGAAACTCGGGAAGATG 597
Query 598 AAGCTTTACGGAATGGTGCAGTGTAGACGGGATTTATGGTTTACGGTTTGTAAGACGTGT 657
||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 598 AAGCTGTACGGAATGGTGCAGTGTACACGGGACCTATGGTTTACGGTTTGTAAGACGTGT 657
Query 658 TTGGATAAGATTATAGGGGAGCTTCCTAAATGTTGTGATGGTAAAGAAGGAGGGAGAGTT 717
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTGGATAAGATTATTGGGGAGCTTCCTAAATGTTGTGATGGTAAAGAAGGAGGGAGAGTT 717
Query 718 TTGAGTGGGAGTTGTAACTTTAGATATGAGATTTACCCTTTTCTTGACACTGTTCGATGA 777
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 718 GTGAGTGGGAGTTGTAACTTTAGGTATGAGATTTACCCTTTTCTTGACACTGTTCGATGA 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28668433584
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5