BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58320.1
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898786 jgi|Araly1|898786|Al_scaffold_0005_2752 811 0.0
Ahg938833 jgi|Araly1|938833|scaffold_503024.1 429 1e-119
> Ahg898786 jgi|Araly1|898786|Al_scaffold_0005_2752
Length=690
Score = 811 bits (439), Expect = 0.0
Identities = 616/697 (88%), Gaps = 29/697 (4%)
Strand=Plus/Plus
Query 1 ATGAAATGTAACAATGTCATAGTTTCCGAAGCGGATACTGATGATACCGCGAAAGAAGAT 60
||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1 ATGAATTGTAACAATGTGGTAGTTTCCGATGCGGATACTGATGATGCCGCGAAAGAAGAT 60
Query 61 CTGTTTGAGGATGGTACAGTTGAAGAGTATCCGGATGATGATGATGCTTCATCTCTCCAC 120
|||||||| |||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 61 CTGTTTGACGATGGTACAGTTGAAGAGGATCC-G--GATGATGATGCTTCATCTCTCCAC 117
Query 121 CAATGGAAGTCCATGGTGTACACCTCGAAGACAGTAGAAAATTTTGGTACAGAGTGTAAC 180
|||| ||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||
Sbjct 118 CAATTGAAGTCCATGGTGGACACCTCGAAGACAGTACAAAATGGTGGTACAGGGTGTAAC 177
Query 181 AATAAGGAATCT-TTTTATGAGT-CGTGG--T--GGA---T-T---AGTGATT-T----T 222
||||||| | || |||| ||| | ||||| | || | | || |||| |
Sbjct 178 AATAAGGCACCTATTTT-TGA-TACGTGGATTAATGATTTTCTAAAAGAGATTCTACCAG 235
Query 223 C--TGGAAACCATTGATGTCAATGGTTTTCAGGTTCTTGCTTCACAAGTACAATCAGTGA 280
| ||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 236 CAAAGGAAACCATGGATGTCAATGGTTTTCAGGTTCTTACTTCACAGGTACAATCAGTGA 295
Query 281 GCCAAATCTTCAAAAGACACCCGGACACAGCAATAGGTTTCCGTCCTAAGAACCAACAGA 340
| || ||||||||||||||||| |||| ||| ||||| |||||||| |||||||||||||
Sbjct 296 GGCAGATCTTCAAAAGACACCCAGACATAGCCATAGGCTTCCGTCCAAAGAACCAACAGA 355
Query 341 TCAGAAAAGCATACATGGATGCACTTCTTAGTCTCATTGAGACATTGTGCCAGTCTCCAG 400
|||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 356 TCAGGAAAGCATACATGGATGCACTTCTTAGGCTCATTGAGACACTGTGCCAGTCTCCAG 415
Query 401 ATAAGCTCTCTGATGATGATCTGAGTAATGCTGATGAGACACTTG-TCGATCTGATTGAT 459
| |||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||
Sbjct 416 AGAAGCTCTCTGATGATGATCTGAGTAATGCTGACGAGACACTTGAT-GATCTGATTGAT 474
Query 460 GTTGGCTTTAAATTGGATTGGCTGAAGACGAAGCTGAATGATGTCTCTGAAAAGAAGAAG 519
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 475 GTTGGCTTTAAACTGGATTGGCTGAAGACGAAGCTGAATGAGGTCTCTGAAAAGAAGAAG 534
Query 520 TTGGGGGAGAGTAGTGTGG-TCCGGCTAGAAACAATGGAAGAACAGTTGCAGAAGCTGAA 578
||||| |||||||||||| || |||||| ||||||||| ||| ||||||||||||||||
Sbjct 535 ATGGGGCAGAGTAGTGTGGCTC-GGCTAGGAACAATGGAGGAAGAGTTGCAGAAGCTGAA 593
Query 579 GCACATGGTCTTGGATCTTGAATCTCAGATGCAGAAGGAAAAAGAGAAGGTGTTGGCTGC 638
|||||||||||||||| ||||| ||||| ||||||||||||| | |||||| ||||||||
Sbjct 594 GCACATGGTCTTGGATTTTGAAGCTCAGCTGCAGAAGGAAAAGGCGAAGGTATTGGCTGC 653
Query 639 AAGAGCTCCTCTATCGTTCAAAGATATTTTTTACTGA 675
||||||||| | |||||||||||| || ||||||||
Sbjct 654 GAGAGCTCCTTTTTCGTTCAAAGATGTTGTTTACTGA 690
> Ahg938833 jgi|Araly1|938833|scaffold_503024.1
Length=1324
Score = 429 bits (232), Expect = 1e-119
Identities = 383/456 (84%), Gaps = 10/456 (2%)
Strand=Plus/Plus
Query 225 GGAAACCATTGATGTCAATGGTTTTCAGGTTCTTGCTTCACAAGTACAATCAGTGAGCCA 284
||||||||| || || ||||||||||| ||| || ||||||| ||| |||| ||||||||
Sbjct 854 GGAAACCATGGACGTTAATGGTTTTCACGTTTTTCCTTCACATGTAGAATCGGTGAGCCA 913
Query 285 AATCTTCAAAAGACACCCGGACACAGCAATAGGTTTCCGTCCTAAGAACCAACAGATCAG 344
||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 914 TATCTTTAAAAGACACCCGGACATAGCATTAGGCTTCCGTCCTAAGAACCAACAGATCAG 973
Query 345 AAAAGCATACATGGATGCACTTCTTAGTC-TCATTGAGACATTGTGCCAGTCTCCAGATA 403
|||||| |||||| ||| ||| ||||| | |||| || | |||||||| | || || |
Sbjct 974 AAAAGCTTACATGAATGAACTCCTTAG-CGTCATCGATATGCTGTGCCAGCCACCGGAAA 1032
Query 404 AGCTCTCTGATGATGATCTGAGTAATGCTGATGAGACACTTGTCGATCTGATTGATGTTG 463
||||||| || ||||||||||| |||||||||| |||||||| ||||||||||||| ||
Sbjct 1033 AGCTCTCCGAGGATGATCTGAGCAATGCTGATGTCACACTTGTTGATCTGATTGATGCTG 1092
Query 464 GCTTTAAATTGGATTGGCTGAAGACGAAGCT-GAATGATGTCTCTGAAAAGAAGAAGTTG 522
||||||| ||||||||||||||||| ||||| || |||| ||||||||||||||||| |
Sbjct 1093 GCTTTAAGTTGGATTGGCTGAAGACAAAGCTTGA-TGATATCTCTGAAAAGAAGAAGATA 1151
Query 523 GGGGAGAGTAGTGTGGTCCGGCTAGAAACAATGGAAGAACAGTTGCAGAAGCTGAAGCAC 582
| | || || ||| || ||||||| |||||||||| |||||||||||||| ||||| ||
Sbjct 1152 GAGCAGGGTTGTGGGGCCCGGCTACAAACAATGGAGGAACAGTTGCAGAATCTGAAACAG 1211
Query 583 ATGGTCTTGGATCTTGAATCTCAGATGCAGAA-GGAAAAAG-AGAAGGTGTT-GGCTGCA 639
||| |||||||||||||| ||||| |||| || |||||| | ||| || || ||| ||
Sbjct 1212 ATGTTCTTGGATCTTGAAACTCAGCTGCA-AATGGAAAAGGCAGA-GGC-TTCGGCCGCG 1268
Query 640 AGAGCTCCTCTATCGTTCAAAGATATTTTTTACTGA 675
||||||||||| || ||||| ||| || ||| ||||
Sbjct 1269 AGAGCTCCTCTCTCCTTCAACGATGTTGTTTGCTGA 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24779896050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5