BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G58330.1 Length=522 Score E Sequences producing significant alignments: (Bits) Value Ahg486285 jgi|Araly1|486285|fgenesh2_kg.5__2277__AT3G58330.1 649 0.0 Ahg938826 jgi|Araly1|938826|scaffold_503017.1 405 2e-112 Ahg938827 jgi|Araly1|938827|scaffold_503018.1 309 1e-83 > Ahg486285 jgi|Araly1|486285|fgenesh2_kg.5__2277__AT3G58330.1 Length=510 Score = 649 bits (351), Expect = 0.0 Identities = 442/485 (91%), Gaps = 9/485 (2%) Strand=Plus/Plus Query 1 ATGTTGAAG-GAAAATAGTTGCGAGGCTAACGACAGTGACGATGGTGATTTTTCTCCTTC 59 |||||| || |||||||||||||||| || ||| ||||| ||||||||||||||||| Sbjct 1 ATGTTG-AGAGAAAATAGTTGCGAGGTTAGCGATAGTGAAGATGGTGATTTTTCTCCAAA 59 Query 60 TCAAGA---TTCGTCGGAAGATGAAGAAACTGTTGAAGTCAATGGGTTTCATGTTCTTCC 116 |||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 60 TCAAGATTCTTCGTCAGAAGATGAAGAAACTGTTGAAGTCAATGGGTTTCAGGTTCTTCC 119 Query 117 TTCACAAGAAAATTTGGTCAGTCAAATGTTaaaaaaaCATCCAGATCTGACTTCAAACTT 176 ||||||||||| |||||||||| ||||||| ||||| ||||||||||| ||||||||||| Sbjct 120 TTCACAAGAAACTTTGGTCAGTGAAATGTTTAAAAAGCATCCAGATCTCACTTCAAACTT 179 Query 177 TGATTTAAAGAATCAACAACTTAAGAATGCTTACATGGATGTCCTCGTCGACATAAGTGA 236 |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||| Sbjct 180 TGATTTAAAGAATCAACAACTTAAGAATGCTTACATGGATGTTCTCCTCGACCTAAATGA 239 Query 237 GACATTGTCCCAGTCGACAAAGGCA-CTTTCCATGGAAGACCTAGATAAAGCAGAGAGTA 295 |||||| |||||||||||||| | |||||| ||| ||||||||| ||||||||||||| Sbjct 240 GACATTATCCCAGTCGACAAAAA-AGCTTTCCTTGGTAGACCTAGACAAAGCAGAGAGTA 298 Query 296 CGCTTTTTGATCTTACGAAAGCAGGTTTGAAAGTGGGTTGGTTGCGTCAGAAGTTGGATG 355 |||||||||||||||| | |||||| ||||||||| |||||||||||||||||||||||| Sbjct 299 CGCTTTTTGATCTTACTAGAGCAGGCTTGAAAGTGTGTTGGTTGCGTCAGAAGTTGGATG 358 Query 356 AAGCTTACTTGAAGAAAGAGAAACAGAGAATTAGTGGTGTC-CGGATCAGAGAACTCGAG 414 |||||||| ||||||| |||||||||||| ||||||||| | |||||||||||||||||| Sbjct 359 AAGCTTACGTGAAGAAGGAGAAACAGAGAGTTAGTGGTG-CGCGGATCAGAGAACTCGAG 417 Query 415 GAACAGGTCAATAAGCGAAAGCTTACTTTGTCCGATTTGGAATCCGACCTTAAAAAAGAG 474 ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 418 GAACAGGTCAAGAAGCGAAAGCTTACTTTGTCCGATTTGGAAACCGACCTTAAGAAAGAG 477 Query 475 AAAGC 479 ||||| Sbjct 478 AAAGC 482 > Ahg938826 jgi|Araly1|938826|scaffold_503017.1 Length=592 Score = 405 bits (219), Expect = 2e-112 Identities = 359/424 (85%), Gaps = 20/424 (5%) Strand=Plus/Plus Query 66 TTCGTCGGAAGATGAAGAAACTGTTGAAGTCAATGGGTTTCATGTTCTTC-CTTCACAAG 124 |||| |||| ||||| ||||| ||| ||||||||||||||||||||| | ||| |||| Sbjct 110 TTCGGCGGACGATGATGAAACAGTTAAAGTCAATGGGTTTCATGTTC-GCGTTTCTCAAG 168 Query 125 AAAATTTGG-TCAGTCAAATGTTaaaaaaaCATCCAGATCTGACTTCAAACTTTGATTTA 183 ||| || | || | ||||| | |||||||||| |||| |||||||| | ||||| Sbjct 169 TAAACAGGGTTAAG-GACATGTTTATAAAACATCCAAATCTCACTTCAAAAATCAATTTA 227 Query 184 AAGAATC-AACAACTTAAGAA-TGCTTACATGGATGTCC-TCGTCGACATAAGT-GAGAC 239 ||||| | |||| ||||| || ||||||||||||||||| || ||||| ||| | ||||| Sbjct 228 AAGAA-CAAACAGCTTAA-AAGTGCTTACATGGATGTCCTTC-TCGACCTAA-TCGAGAC 283 Query 240 ATTGTCCCAGTCGACAAAGGCA-CTTTCCATGGAAGACCTAGATAAAGCAGAGAGTACGC 298 | ||| |||||| ||||| | | || |||||| |||||||| | |||||||| | ||||| Sbjct 284 ACTGTGCCAGTCAACAAAAG-AGCTGTCCATGAAAGACCTAAACAAAGCAGACAATACGC 342 Query 299 TTTTTGATCTTACGAAAGCAGGTTTGAAAGTGGGTTGGTTGCGTCAGAAGTTGGATGAAG 358 ||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| | Sbjct 343 TTTTTGATCTTACTAGAGCAGGCTTGAAAGTGGGTTGGTTGCGTCAGAAGTTGGATGAGG 402 Query 359 CTTACTTGAAGAAAGAGAAACAGAGAATTAGTGGTGTCC-GGATCAGAGAACTCGAGGAA 417 ||||||||||||| |||||||||||| ||||||||| || |||||||||||||||||||| Sbjct 403 CTTACTTGAAGAAGGAGAAACAGAGATTTAGTGGTG-CCAGGATCAGAGAACTCGAGGAA 461 Query 418 CAGGTCAATAAGCGAAAGCTTACTTTGTCC-GATTTGGAATCCGAC-CTTAAAAAAGAGA 475 |||||||| ||||||||||| |||||||| | |||||||||| || ||||| ||||||| Sbjct 462 CAGGTCAAGAAGCGAAAGCTGACTTTGTCTAG-TTTGGAATCC-ACACTTAAGAAAGAGA 519 Query 476 AAGC 479 |||| Sbjct 520 AAGC 523 > Ahg938827 jgi|Araly1|938827|scaffold_503018.1 Length=506 Score = 309 bits (167), Expect = 1e-83 Identities = 255/297 (86%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 187 AATCAACAACTTAAGAATGCTTACATGGATGTCCTCGTCGACATAAGT-GAGACATTGTC 245 |||||||| || |||||||||| || ||||||||| || || ||| | |||||| ||| Sbjct 144 AATCAACAGCTCAAGAATGCTTTTATTGATGTCCTCCTCAACCTAA-TCGAGACACTGTG 202 Query 246 CCAGTCGACAA-AGGCA-CTTTCCATGGAAGACCTAGATAAAGCAGAGAGTACGCTTTTT 303 |||||| |||| | | | |||||| | ||||||||| | |||| ||||||||| |||||| Sbjct 203 CCAGTCAACAACA-G-AGCTTTCCTTAGAAGACCTAAACAAAGAAGAGAGTACCCTTTTT 260 Query 304 GATCTTACGAAAGCAGGTTTGAAAGTGGGTTGGTTGCGTCAGAAGTTGGATGAAGCTTAC 363 |||||||| | |||||| ||| |||||||||||||||||||||||| ||| | ||||||| Sbjct 261 GATCTTACTAGAGCAGGCTTGGAAGTGGGTTGGTTGCGTCAGAAGTGGGACGTAGCTTAC 320 Query 364 TTGAAGAAAGAGAAACAGAGAATTAGTGGTGTCCGGATCAGAGAACTCGAGGAACAGGTC 423 |||||||| |||||||||||| ||| ||| | |||||||||||||||||||||||| ||| Sbjct 321 TTGAAGAAGGAGAAACAGAGAGTTACTGGGGCCCGGATCAGAGAACTCGAGGAACAAGTC 380 Query 424 AATAAGCGAAAGCT-TACTTTGTCCGATTTGGAATCCGACCTTAAAAAAGAGAAAGC 479 | ||||||||||| | |||||||||||||||||||||||||||| || |||||||| Sbjct 381 AGGAAGCGAAAGCTGT-CTTTGTCCGATTTGGAATCCGACCTTAAGAATGAGAAAGC 436 Score = 75.0 bits (40), Expect = 5e-13 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 69 GTCGGAAGATGAAGAAACTGTTGAAGTCAATGGGTTTCATGTTCTTCCTTCACAA 123 ||||||||||||||||||||||||||||||||||||| | || ||| ||||||| Sbjct 89 GTCGGAAGATGAAGAAACTGTTGAAGTCAATGGGTTTGAGGTCCTTGTTTCACAA 143 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19001483322 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5