BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58330.1
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486285 jgi|Araly1|486285|fgenesh2_kg.5__2277__AT3G58330.1 649 0.0
Ahg938826 jgi|Araly1|938826|scaffold_503017.1 405 2e-112
Ahg938827 jgi|Araly1|938827|scaffold_503018.1 309 1e-83
> Ahg486285 jgi|Araly1|486285|fgenesh2_kg.5__2277__AT3G58330.1
Length=510
Score = 649 bits (351), Expect = 0.0
Identities = 442/485 (91%), Gaps = 9/485 (2%)
Strand=Plus/Plus
Query 1 ATGTTGAAG-GAAAATAGTTGCGAGGCTAACGACAGTGACGATGGTGATTTTTCTCCTTC 59
|||||| || |||||||||||||||| || ||| ||||| |||||||||||||||||
Sbjct 1 ATGTTG-AGAGAAAATAGTTGCGAGGTTAGCGATAGTGAAGATGGTGATTTTTCTCCAAA 59
Query 60 TCAAGA---TTCGTCGGAAGATGAAGAAACTGTTGAAGTCAATGGGTTTCATGTTCTTCC 116
|||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 TCAAGATTCTTCGTCAGAAGATGAAGAAACTGTTGAAGTCAATGGGTTTCAGGTTCTTCC 119
Query 117 TTCACAAGAAAATTTGGTCAGTCAAATGTTaaaaaaaCATCCAGATCTGACTTCAAACTT 176
||||||||||| |||||||||| ||||||| ||||| ||||||||||| |||||||||||
Sbjct 120 TTCACAAGAAACTTTGGTCAGTGAAATGTTTAAAAAGCATCCAGATCTCACTTCAAACTT 179
Query 177 TGATTTAAAGAATCAACAACTTAAGAATGCTTACATGGATGTCCTCGTCGACATAAGTGA 236
|||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| |||
Sbjct 180 TGATTTAAAGAATCAACAACTTAAGAATGCTTACATGGATGTTCTCCTCGACCTAAATGA 239
Query 237 GACATTGTCCCAGTCGACAAAGGCA-CTTTCCATGGAAGACCTAGATAAAGCAGAGAGTA 295
|||||| |||||||||||||| | |||||| ||| ||||||||| |||||||||||||
Sbjct 240 GACATTATCCCAGTCGACAAAAA-AGCTTTCCTTGGTAGACCTAGACAAAGCAGAGAGTA 298
Query 296 CGCTTTTTGATCTTACGAAAGCAGGTTTGAAAGTGGGTTGGTTGCGTCAGAAGTTGGATG 355
|||||||||||||||| | |||||| ||||||||| ||||||||||||||||||||||||
Sbjct 299 CGCTTTTTGATCTTACTAGAGCAGGCTTGAAAGTGTGTTGGTTGCGTCAGAAGTTGGATG 358
Query 356 AAGCTTACTTGAAGAAAGAGAAACAGAGAATTAGTGGTGTC-CGGATCAGAGAACTCGAG 414
|||||||| ||||||| |||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 359 AAGCTTACGTGAAGAAGGAGAAACAGAGAGTTAGTGGTG-CGCGGATCAGAGAACTCGAG 417
Query 415 GAACAGGTCAATAAGCGAAAGCTTACTTTGTCCGATTTGGAATCCGACCTTAAAAAAGAG 474
||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 418 GAACAGGTCAAGAAGCGAAAGCTTACTTTGTCCGATTTGGAAACCGACCTTAAGAAAGAG 477
Query 475 AAAGC 479
|||||
Sbjct 478 AAAGC 482
> Ahg938826 jgi|Araly1|938826|scaffold_503017.1
Length=592
Score = 405 bits (219), Expect = 2e-112
Identities = 359/424 (85%), Gaps = 20/424 (5%)
Strand=Plus/Plus
Query 66 TTCGTCGGAAGATGAAGAAACTGTTGAAGTCAATGGGTTTCATGTTCTTC-CTTCACAAG 124
|||| |||| ||||| ||||| ||| ||||||||||||||||||||| | ||| ||||
Sbjct 110 TTCGGCGGACGATGATGAAACAGTTAAAGTCAATGGGTTTCATGTTC-GCGTTTCTCAAG 168
Query 125 AAAATTTGG-TCAGTCAAATGTTaaaaaaaCATCCAGATCTGACTTCAAACTTTGATTTA 183
||| || | || | ||||| | |||||||||| |||| |||||||| | |||||
Sbjct 169 TAAACAGGGTTAAG-GACATGTTTATAAAACATCCAAATCTCACTTCAAAAATCAATTTA 227
Query 184 AAGAATC-AACAACTTAAGAA-TGCTTACATGGATGTCC-TCGTCGACATAAGT-GAGAC 239
||||| | |||| ||||| || ||||||||||||||||| || ||||| ||| | |||||
Sbjct 228 AAGAA-CAAACAGCTTAA-AAGTGCTTACATGGATGTCCTTC-TCGACCTAA-TCGAGAC 283
Query 240 ATTGTCCCAGTCGACAAAGGCA-CTTTCCATGGAAGACCTAGATAAAGCAGAGAGTACGC 298
| ||| |||||| ||||| | | || |||||| |||||||| | |||||||| | |||||
Sbjct 284 ACTGTGCCAGTCAACAAAAG-AGCTGTCCATGAAAGACCTAAACAAAGCAGACAATACGC 342
Query 299 TTTTTGATCTTACGAAAGCAGGTTTGAAAGTGGGTTGGTTGCGTCAGAAGTTGGATGAAG 358
||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 343 TTTTTGATCTTACTAGAGCAGGCTTGAAAGTGGGTTGGTTGCGTCAGAAGTTGGATGAGG 402
Query 359 CTTACTTGAAGAAAGAGAAACAGAGAATTAGTGGTGTCC-GGATCAGAGAACTCGAGGAA 417
||||||||||||| |||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct 403 CTTACTTGAAGAAGGAGAAACAGAGATTTAGTGGTG-CCAGGATCAGAGAACTCGAGGAA 461
Query 418 CAGGTCAATAAGCGAAAGCTTACTTTGTCC-GATTTGGAATCCGAC-CTTAAAAAAGAGA 475
|||||||| ||||||||||| |||||||| | |||||||||| || ||||| |||||||
Sbjct 462 CAGGTCAAGAAGCGAAAGCTGACTTTGTCTAG-TTTGGAATCC-ACACTTAAGAAAGAGA 519
Query 476 AAGC 479
||||
Sbjct 520 AAGC 523
> Ahg938827 jgi|Araly1|938827|scaffold_503018.1
Length=506
Score = 309 bits (167), Expect = 1e-83
Identities = 255/297 (86%), Gaps = 8/297 (3%)
Strand=Plus/Plus
Query 187 AATCAACAACTTAAGAATGCTTACATGGATGTCCTCGTCGACATAAGT-GAGACATTGTC 245
|||||||| || |||||||||| || ||||||||| || || ||| | |||||| |||
Sbjct 144 AATCAACAGCTCAAGAATGCTTTTATTGATGTCCTCCTCAACCTAA-TCGAGACACTGTG 202
Query 246 CCAGTCGACAA-AGGCA-CTTTCCATGGAAGACCTAGATAAAGCAGAGAGTACGCTTTTT 303
|||||| |||| | | | |||||| | ||||||||| | |||| ||||||||| ||||||
Sbjct 203 CCAGTCAACAACA-G-AGCTTTCCTTAGAAGACCTAAACAAAGAAGAGAGTACCCTTTTT 260
Query 304 GATCTTACGAAAGCAGGTTTGAAAGTGGGTTGGTTGCGTCAGAAGTTGGATGAAGCTTAC 363
|||||||| | |||||| ||| |||||||||||||||||||||||| ||| | |||||||
Sbjct 261 GATCTTACTAGAGCAGGCTTGGAAGTGGGTTGGTTGCGTCAGAAGTGGGACGTAGCTTAC 320
Query 364 TTGAAGAAAGAGAAACAGAGAATTAGTGGTGTCCGGATCAGAGAACTCGAGGAACAGGTC 423
|||||||| |||||||||||| ||| ||| | |||||||||||||||||||||||| |||
Sbjct 321 TTGAAGAAGGAGAAACAGAGAGTTACTGGGGCCCGGATCAGAGAACTCGAGGAACAAGTC 380
Query 424 AATAAGCGAAAGCT-TACTTTGTCCGATTTGGAATCCGACCTTAAAAAAGAGAAAGC 479
| ||||||||||| | |||||||||||||||||||||||||||| || ||||||||
Sbjct 381 AGGAAGCGAAAGCTGT-CTTTGTCCGATTTGGAATCCGACCTTAAGAATGAGAAAGC 436
Score = 75.0 bits (40), Expect = 5e-13
Identities = 50/55 (91%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 69 GTCGGAAGATGAAGAAACTGTTGAAGTCAATGGGTTTCATGTTCTTCCTTCACAA 123
||||||||||||||||||||||||||||||||||||| | || ||| |||||||
Sbjct 89 GTCGGAAGATGAAGAAACTGTTGAAGTCAATGGGTTTGAGGTCCTTGTTTCACAA 143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19001483322
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5