BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58350.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486287 jgi|Araly1|486287|fgenesh2_kg.5__2279__AT3G58350.1 1657 0.0
> Ahg486287 jgi|Araly1|486287|fgenesh2_kg.5__2279__AT3G58350.1
Length=1110
Score = 1657 bits (897), Expect = 0.0
Identities = 1043/1113 (94%), Gaps = 11/1113 (1%)
Strand=Plus/Plus
Query 24 GTTTGATTGCAGAGGAAGCTTCACCAAGTATCAATGGGGAAGCAATTCGATAAGAAGATC 83
||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||
Sbjct 1 GTTTGATTGCAGAGGAAGCTTCATCAAGTATCAATGGAGAAGCAATTTGATAAGAAGATC 60
Query 84 ACTTGGACAATTAAAAATTTCGCCTCTTTGCTATCTGACCTCATTTATTCTGATCATTTT 143
|||||||| |||||||||||| ||||||| | | ||||||| ||||||||||||||||||
Sbjct 61 ACTTGGACGATTAAAAATTTCCCCTCTTTACCAGCTGACCTTATTTATTCTGATCATTTT 120
Query 144 GTCGTTGGTGGCTGCAAATGGCATCTACGGGCCTATCCCAAGGGATATAATAATGCTAAT 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCGTTGGTGGCTGCAAATGGCATCTACGGGCCTATCCCAAGGGATATAATAATGCTAAT 180
Query 204 TCTTTGTCCTTGTTTCTTGGTGTTGCTGTTCCTACTTCTCTGCCTTCTGGATGGAGAAGA 263
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATTTGTCCTTGTTTCTGGGTGTTGCTGTTCCTACTTCTCTGCCTTCTGGATGGAGAAGA 240
Query 264 CACACTAAATTTCGTCTAACTCTAGTAAATCAATTATCAGATAAACTCTCTCAGTCAAAA 323
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 CACACTAAATTTCGTCTAACTCTAGTAAATCAATCATCAGATAAACTCTCTCAGTCAAAA 300
Query 324 CTTA-ATGAACTAGAACAGTGGTTTGATGAGAAGACTACCAACTGGGGTCTTTCATCCAT 382
| || | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 CGTACA-GAACTAGAACAGTGGTTTGATGAGAAGACTACCAACTGGGGTCTTCCATCCAT 359
Query 383 GTGTCCCCTAAATGAAATTCATGCCAAAGATAGCGGATTTCTGTTAAACGGGGAACTTAA 442
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 GTGTCCCCTAAATGAAATTCATGCCAAAGATAGCGGATTTCTCTTAAACGGGGAACTTAA 419
Query 443 GATTGTTGTCGAGATCAAAGTTCTTGAAACTATTGGCAAATTAGATGTGACAGAGGAAAC 502
|| ||||||||||| |||||||||||||||||||| ||||||||| | |||||||||||
Sbjct 420 AATAGTTGTCGAGATAAAAGTTCTTGAAACTATTGGAAAATTAGATATAACAGAGGAAAC 479
Query 503 TTCAACAATCACGGAAACTGTGGATGTTAATGGCTTTCAACTCCTTCCTTCACAAGCAAA 562
||||||| |||| ||| | ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 480 TTCAACAGTCACAGAATCCGTGGATGTTAATGGCTTTCAACTTCTTCCTTCACAGGCAAA 539
Query 563 ATCTGTGAGTCGTATGTTTGCAAAACACCCAGAGCTTGCATCTGATTTACGTCCAAAGAA 622
||||||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||
Sbjct 540 ATCTGTGAGCCGTATGTTTGAAAAACACCCAGAGATGGCATCTGATTTACGTCCAAAGAA 599
Query 623 CCCAAATCTCAGGACAGGTTACATGAGTCTACTACTCAGTCTGATTGAGACTCTGAGCCA 682
||||||||| ||| |||||||||||||| | ||||||||||||||||||||| || ||||
Sbjct 600 CCCAAATCTAAGGTCAGGTTACATGAGTTTGCTACTCAGTCTGATTGAGACTATGTGCCA 659
Query 683 GTTACCTCAGCAAATGTCAAAGGATGATCTGTTGGATGCTTACGATGCACTGGGATCCAT 742
|||||||| | ||||||| ||||| ||||||||||||||||| | |||||||||||||||
Sbjct 660 GTTACCTCGGGAAATGTCCAAGGAGGATCTGTTGGATGCTTATGCTGCACTGGGATCCAT 719
Query 743 GAGAGATGCTGGATTTAAACTGGATTGGTTGGAGAAGAAACTTTATGAAGTGTCAGAAAA 802
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 GAGAGATGCTGGATTTAAACTGGATTGGTTGGAGAAGAAACTTTATGATGTGTCAGAAAA 779
Query 803 GAAGGAGAATGAGGAGGCTAGTGAGACTGGGCTGCAAGAAATGGAGGAAGAGTTGAAGGA 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAAGGAGAATGAGGAGGCTAGTGAGACTGGGCTGCAAGAAATGGAGGAAGAGTTGAAGGA 839
Query 863 CATGAAGCAGAAGTGTTTAGAAATGGAAGCTCTGGTTGAGAAGGAGAAGGCAAAAGTGTC 922
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 840 AATGAAGCAGAAGTGTTTAGAAATGGAAGCTCGGGTAGAGAAGGAGAAGGCAAAAGTGTC 899
Query 923 GACTGCAAAAGCTCCTATCTCATTCGATGATATTGTTTGATGCTTCTTGTGTTTTTAAGA 982
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 900 GACTGCAAAAGCTCCTATCTCATTCGATGATATTGTTTAATGTTTCTTGTGTTTT-AAGG 958
Query 983 CACTTGGAGTTTGGTTTTACTTGGTGTTGTGGGATGTTCTTGCTAATGAGTCCTCTTAAA 1042
||| |||||||||||| |||||||||||||||| ||| ||||||||| | ||||||||||
Sbjct 959 CACGTGGAGTTTGGTTCTACTTGGTGTTGTGGGCTGTCCTTGCTAATTATTCCTCTTAAA 1018
Query 1043 ACTTAGGAAGATAAAAGAGACCCTGTGTT-GTA--TAT---ATCCACAATGTTGTAAAAT 1096
|||||||||||||| ||||||||||| || ||| ||| |||||||||||||||||||
Sbjct 1019 ACTTAGGAAGATAACAGAGACCCTGTCTTTGTAAATATCCGATCCACAATGTTGTAAAAT 1078
Query 1097 GTAACTCTCTTGATTTCTGTAAAG-AGTTGATC 1128
|||||||||| ||||||||||||| | ||||||
Sbjct 1079 GTAACTCTCTCGATTTCTGTAAAGGA-TTGATC 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5