BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58430.1
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938834 jgi|Araly1|938834|scaffold_503025.1 470 2e-131
Ahg938836 jgi|Araly1|938836|scaffold_503027.1 459 4e-128
Ahg486292 jgi|Araly1|486292|fgenesh2_kg.5__2284__AT3G58440.1 366 2e-100
Ahg898788 jgi|Araly1|898788|Al_scaffold_0005_2754 329 3e-89
Ahg914971 jgi|Araly1|914971|Al_scaffold_0001_5225 224 2e-57
Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220 182 9e-45
Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996 145 1e-33
> Ahg938834 jgi|Araly1|938834|scaffold_503025.1
Length=1017
Score = 470 bits (254), Expect = 2e-131
Identities = 382/444 (86%), Gaps = 7/444 (2%)
Strand=Plus/Plus
Query 979 GGAAAG-GTAGATGTCAATGGCTTTCAAGTTCTTCCTTCACAGGTGGAATATGTGAGATC 1037
|||||| | ||||||||||| |||||||||| ||||||||||||||||| |||||||
Sbjct 548 GGAAAGCATTGATGTCAATGGGTTTCAAGTTCATCCTTCACAGGTGGAATCCGTGAGATG 607
Query 1038 AATATTTGAAAGACACCCTGACATTGCAGTAGAGTTCCGAGCAAAGAACCAACATCTGAG 1097
|| ||||||| |||||| ||||||||| |||| |||| || ||||||||||||||||||
Sbjct 608 TATTTTTGAAAAACACCCAGACATTGCAATAGATTTCCAAGTAAAGAACCAACATCTGAG 667
Query 1098 GACATCATGCATGATTTTTCTGCTTAGTTTAATTGAGACACTGTGCCAGTCACTTGAAGA 1157
|| | ||| ||||| ||| ||| ||| |||| ||||| |||||||| | ||| | ||
Sbjct 668 GAAAACATTCATGAATTTCCTGGTTAACGTAATCGAGACGCTGTGCCAACCTCTTCAGGA 727
Query 1158 GCTCT-CAAATGAAGATCTTGTGGAAGCAGACATTGCATTGACATATGTGAAAGATGCAG 1216
||||| |||| ||||||||| |||| |||||||||||| ||||||| |||||||||||||
Sbjct 728 GCTCTCCAAA-GAAGATCTTTTGGAGGCAGACATTGCACTGACATACGTGAAAGATGCAG 786
Query 1217 GATTTAAGGTGGATTGGTTGGAGAAGAAGCTGGACCAAGTAAAAGAAAAGAAGGAGAAAG 1276
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 787 GATTTAAGGTGGATTGGTTGGAGAAGAAGCTGGAGGAAGTAAAAGAAAAGAAGGGGAAAG 846
Query 1277 AACTGTCTGATATGGTTCAGCTACAAGAAATGGAGGACCATTTACTGAAACTGAAGCAAA 1336
||||||| | | || | ||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 847 AACTGTCCGGTTTGCTCCAGCTCCAAGAAATGGAGGATAATTTACTGAAACTGAAGGAAA 906
Query 1337 GCTGTTCAGATCTTGATGATCTAGTGG-TGAAGAAGAAGG-ACGAGTTGTCGGTTACCAG 1394
|||||||| || |||| |||||||| | |||||||||| | |||||||||||||||||
Sbjct 907 AATGTTCAGACCTGGATGCTCTAGTGGAT-AAGAAGAAGGCA-GAGTTGTCGGTTACCAG 964
Query 1395 ATCTCCGCTGTCATTCGATGATGT 1418
| |||||| ||||||||||||||
Sbjct 965 AAGTCCGCTCTCATTCGATGATGT 988
> Ahg938836 jgi|Araly1|938836|scaffold_503027.1
Length=1373
Score = 459 bits (248), Expect = 4e-128
Identities = 472/574 (82%), Gaps = 40/574 (7%)
Strand=Plus/Plus
Query 1 ATAGCGTCAATGGAGAAGCAAGCTCATAAAAAGTTTTGTTGGATAATAAAGAACTTCTCT 60
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 13 ATAGCGTCAATGGAGAAGCAAGCTCATAAGAAGTTTTATTGGATAATAAAGAACTTCTCT 72
Query 61 CCGCAATCTGAGAGGTTATATTCTGTTCCAGTCTTGATCGGGGACTGCAAATGGCGTCCT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 73 CCGCAATCTGAGAGGTTATATTCTGTTCCAGTCTTGATCGGGGACTGCAAATGGCGTCTT 132
Query 121 ATCGCTTATCCCATTCGAGA-TAA-GT-A---CTTTTCTCTGTGTCTACAAG-TGGTTGA 173
|| |||||||||| |||| | || | ||||||||||| |||| | | | |||||
Sbjct 133 ATTGCTTATCCCAAGGGAGACTTCTGTGATTACTTTTCTCTGTTTCTAGA-GCTTGTTGA 191
Query 174 TTTTGAATCATTACCTTGTGGATGGGGAAGATACGTAGAACTTCGGCTAACTTTACG-GA 232
|||||||||||| |||||||||||||||||||||| | |||||||| |||| ||| | ||
Sbjct 192 TTTTGAATCATTGCCTTGTGGATGGGGAAGATACGCAAAACTTCGGTTAACGTTA-GTGA 250
Query 233 ACCAACATAATTCTCTCAA-TCTTTCCATA---AAAG---CAGATCACTGTTTTGACGAA 285
| | || | || || ||| |||||||||| |||| |||| ||||||||||| ||
Sbjct 251 ATCGACTT--TT-TC-CAAATCTTTCCATAGTTAAAGAAACAGAGCACTGTTTTGATGAC 306
Query 286 AAGCGTACCACTTGGGGTATTCCAATTCCAGAAAGGATTCCCATATGCAAACTTCA-GAC 344
||| ||| ||||| ||| |||||| | | | ||||||| | ||||||||| ||
Sbjct 307 AAGTGTAGCACTTTTGGTTTTCCAACT--AT---GC-TTCCCATTTACAAACTTCAAGAG 360
Query 345 TGAACTTTATCAGTCTGAACATGTGGTGAAAGGAGACTTCAAGATTATTGCAGAGGTTGA 404
||| |||| | || | ||||||| ||||| |||| |||||||||||||| ||
Sbjct 361 -GAAG---ATCA-TG-GATT-TCTGGTGAACGGAGAAGTCAAAATTATTGCAGAGGTAGA 413
Query 405 TGTTTTTGAAGCTGTTGGGACATTGACTGAATCAGATATTTCGGGAA-AAGCATCTGAAC 463
||||| |||| ||| ||||||||| | ||||||||| ||||||| || || ||||||| |
Sbjct 414 TGTTTCTGAATCTGCTGGGACATTAAATGAATCAGAGATTTCGG-AAGAATCATCTGATC 472
Query 464 TTCTGACCaa-aaaaaTACGGAATGATGGCAATGAGTCTGGTGATTTGCTCAAGAAAACT 522
|||||| ||| ||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 473 TTCTGATCAAGAAAAA-AGGGAATGATGGCAATGAGTCTGATGATTTGCTCAAGAAAACT 531
Query 523 TCACCAGAAAAAGAAAGCAACCATGTCAATGAAT 556
| | ||| ||| ||||||||| || | ||| |||
Sbjct 532 TTATCAGTAAAGGAAAGCAACAATAT-AATTAAT 564
Score = 250 bits (135), Expect = 3e-65
Identities = 213/250 (85%), Gaps = 7/250 (3%)
Strand=Plus/Plus
Query 1039 ATATTTGAAAG-ACACCCTGACATTGCAGTAGAGTTCCGAGCAAAGAACCAACATCTGAG 1097
||||| | ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1102 ATATTCG-AAGTACACCCTGACATTGCAGTAGAATTCCGTGCAAAGAACCAACATCTGAG 1160
Query 1098 GACATCATGCATGATTTTTCTGCTTAGTTTAATTGAGACACTGTGCCAGTCACTTGAAG- 1156
|||| ||| ||||| ||| |||| || ||||| ||||| |||| |||| |||||| ||
Sbjct 1161 GACAACATTCATGAATTTCCTGCACAGCTTAATCGAGACGCTGTACCAGCCACTTG-AGT 1219
Query 1157 AGCTCTCAAATGAAGATCTTGTGGAAGCAGACATTGCATTGACATA-TGTGAAAGATGCA 1215
||| || ||||||||||| |||||||||||||||||| ||||||| | || ||||||
Sbjct 1220 GGCTTTCCAATGAAGATCTGGTGGAAGCAGACATTGCAGTGACATACT-TGGAAGATGTG 1278
Query 1216 GGATTTAAGGTGGATTGGTTGGAGAAGAAGCTGGACCAAGTAAAAGAAAAGAAG-GAGAA 1274
||||||||||||||||||||||||||||| ||| ||||| |||| ||||| || ||||
Sbjct 1279 GGATTTAAGGTGGATTGGTTGGAGAAGAAACTGAACCAACTAAAGGAAAAAAAAAGAGAG 1338
Query 1275 AGAACTGTCT 1284
||||| ||||
Sbjct 1339 AGAACAGTCT 1348
> Ahg486292 jgi|Araly1|486292|fgenesh2_kg.5__2284__AT3G58440.1
Length=1344
Score = 366 bits (198), Expect = 2e-100
Identities = 369/449 (82%), Gaps = 21/449 (5%)
Strand=Plus/Plus
Query 979 GGAAA-GGTAGATGTCAATGGCTTTCAAGTTCTTCCTT-CACAGGTGGAATATGTGAGAT 1036
||||| || ||| ||||||| ||| | ||| || ||| || ||||||||| |||||||
Sbjct 894 GGAAACAGTGGATATCAATGGGTTTGAGGTTGTTTCTTCCA-AGGTGGAATCTGTGAGA- 951
Query 1037 C-AATATTTGAAAGACACCCTGACATTGCAGTAGAGTTCCGAGCAAAGAACCAACATCTG 1095
| ||||| ||||||||||| |||||||| || ||||| || | ||||||||||||||||
Sbjct 952 CGTATATTCGAAAGACACCCAGACATTGCTGTGGAGTTTCGTGGAAAGAACCAACATCTG 1011
Query 1096 AGG-ACATCATGCATGATTTTTCTGCTTAGTTTAATTGAGAC-ACTGTGCCAGTCACTTG 1153
||| || |||| |||| ||||||||| || ||||| ||||| | ||||||| |||||||
Sbjct 1012 AGGAAC-GCATGTATGAATTTTCTGCTCAGCTTAATCGAGACGA-TGTGCCAATCACTTG 1069
Query 1154 AAGAGCTCTCAAATGAAGATCTTGTGGAAGCAGACATTGCATTGACATA-TGTGAAAGAT 1212
| |||||||| ||||||||||||||||||||||||||||| |||||||| | ||| ||||
Sbjct 1070 AGGAGCTCTCCAATGAAGATCTTGTGGAAGCAGACATTGCGTTGACATACT-TGAGAGAT 1128
Query 1213 GCAGGATTTAAGGTGGATTGGTTGGAGAAGAAGCTGGACCAAGTAAAAGAAAAGAAGGAG 1272
||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1129 GCAGGGTTTAAGGTGGATTGGTTGGAGAAGAAGCTGGACCAACTAAAGGAAAAGAAGGAG 1188
Query 1273 AAAGA-ACTGTCTGATATGGTTCAG-CTACAAGAAATGGAGGACCATTTACTGAAACTGA 1330
|||| | |||||| | ||| ||| || || || || ||||| || || ||| | ||
Sbjct 1189 GAAGAGA-TGTCTGGTTTGGC-CAGGCTCCATGAGATAGAGGAAAATCTAGTGATATTGG 1246
Query 1331 AGCAAA-GCTGTTCAGATCTTGATGATCTAGTGGTGAAGAAGAAGG-ACGAGTTGTCGGT 1388
|||||| | || ||||| || |||| ||| | || |||| |||||| | ||||||||||
Sbjct 1247 AGCAAAAG-TGGTCAGACCTGGATGCTCTTGCGGAGAAGGAGAAGGCA-GAGTTGTCGGC 1304
Query 1389 TACCAGATCT-CCGCTGTCATTCGATGAT 1416
|||||| || || |||| |||||||||
Sbjct 1305 CACCAGAGCTGCCA-TGTCTTTCGATGAT 1332
Score = 161 bits (87), Expect = 1e-38
Identities = 167/204 (82%), Gaps = 12/204 (6%)
Strand=Plus/Plus
Query 1417 GTGGATTGGTTGGAGAAGAAGCTGGACCAAGTGAAAG-ACAAGAAGGAG-A-GAGAACAG 1473
|||||||||||||||||||||||||||||| | |||| | ||||||||| | |||| |
Sbjct 1141 GTGGATTGGTTGGAGAAGAAGCTGGACCAACT-AAAGGAAAAGAAGGAGGAAGAGAT--G 1197
Query 1474 TCTGGTTTAGCCCGGCTTCACGA-ACTAGAGGAATATTTACTTAAACTGAAGCAAAAGTG 1532
|||||||| ||| |||| || || | |||||||| || || | | | || ||||||||||
Sbjct 1198 TCTGGTTTGGCCAGGCTCCATGAGA-TAGAGGAAAATCTAGTGATATTGGAGCAAAAGTG 1256
Query 1533 TTCAAACTTGGAT-CTTCTAGTGGAGAAGGAGAATGTAGAGTTGTCGGCCACCAGAACT- 1590
||| || ||||| || || | |||||||||||| | ||||||||||||||||||| ||
Sbjct 1257 GTCAGACCTGGATGCT-CTTGCGGAGAAGGAGAAGGCAGAGTTGTCGGCCACCAGAGCTG 1315
Query 1591 CCTATGTCATTCAATGATGTTGTT 1614
|| ||||| ||| ||||| |||||
Sbjct 1316 CC-ATGTCTTTCGATGATTTTGTT 1338
> Ahg898788 jgi|Araly1|898788|Al_scaffold_0005_2754
Length=918
Score = 329 bits (178), Expect = 3e-89
Identities = 277/325 (85%), Gaps = 6/325 (2%)
Strand=Plus/Plus
Query 990 TGTCAATGGCTTTCAAGTTCTTCCTTCACAGGTGGAATATGTGAGATC-AATATTTG-AA 1047
||| ||||| ||||||||||||||||||||||| |||| |||||| | || |||| ||
Sbjct 504 TGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAG-CCGTATTTTTGAAA 562
Query 1048 AGACACCCTGACATTGCAGTAGAGTTCCGAGCAAAGAACCAACATCTGAGGACATCATGC 1107
|| ||||| || |||||||||| ||||| || |||||||||||||||||||| | ||| |
Sbjct 563 AG-CACCCAGAGATTGCAGTAGGGTTCCAAGTAAAGAACCAACATCTGAGGAAAACATTC 621
Query 1108 ATGATTTTTCTGCTTAGTTTAATTGAGACACTGTGCCAGTCACTTGAAGAGCTCTCAAAT 1167
|||| ||| ||| | | |||||||||| ||||| || || ||| | ||||||||||||
Sbjct 622 ATGAATTTCCTGGTCAACGTAATTGAGACGCTGTGTCAATCTCTTCAGGAGCTCTCAAAT 681
Query 1168 GAAGATCTTGTGGAAGCAGACATTGCATTGACATATGTGAAAGATGCAGGATTTAAGGTG 1227
|||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||||
Sbjct 682 GAAGATCTTGTGGAAGTAGACATTGCACTGACATATTTGAAAGATGCGGGATTTAAGGTG 741
Query 1228 GATTGGTTGGAGAAGAAGCTGGACCAAGTAAAAGAAAAGAAGGAGAAAGAACTGTCTGAT 1287
|||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| |
Sbjct 742 GATTGGTTAGAGAAGAAGCTGGACCAAGTGAAAGAAAAGAAGGAGAAAGAACAATCTGGT 801
Query 1288 ATGGTTCAG-CTACAAGAAATGGAG 1311
|||| || || |||| ||| |||
Sbjct 802 TTGGT-CATACTCCAAGGAATTGAG 825
> Ahg914971 jgi|Araly1|914971|Al_scaffold_0001_5225
Length=510
Score = 224 bits (121), Expect = 2e-57
Identities = 205/244 (84%), Gaps = 12/244 (5%)
Strand=Plus/Plus
Query 1048 AGACACCCTGACATTGCAGTAGAG-TTCCGAGCAAAGAACCAACATCTGAGGACATCATG 1106
||||| || ||||||||||| | | ||||| ||||||| ||||||||| |||||| |||
Sbjct 175 AGACATCCAGACATTGCAGTCG-GCTTCCGCGCAAAGAGCCAACATCTAAGGACAACATA 233
Query 1107 CATG-ATTTTTCTGCTTAGTTTAATT-GAGACACTGTGCCAGTCACTTGAAGAGCTCT-C 1163
|||| |||| | ||||||| || ||| || || |||||| |||||||| | ||||| | |
Sbjct 234 CATGAATTTCT-TGCTTAGCTT-ATTCGAAACGCTGTGCAAGTCACTTCAGGAGCT-TAC 290
Query 1164 AAATGAAGATCTTGTGGAAGCAGACATTGCATTGACATA-TGTGAAAGATGCAG-GATTT 1221
||||||||||||||||| ||||||||| | |||||||| | ||||| ||| | | |||
Sbjct 291 CAATGAAGATCTTGTGGATGCAGACATTTCGTTGACATACT-TGAAATATG-TGAGCTTT 348
Query 1222 AAGGTGGATTGGTTGGAGAAGAAGCTGGACCAAGTAAAAGAAAAGAAGGAGAAAGAACTG 1281
||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| | |
Sbjct 349 AAGGTGGATTGGTTGGAGAAGAAGCTGGAACAAGTGAAAGAAAAGAAAGAGAAAGAGCAG 408
Query 1282 TCTG 1285
||||
Sbjct 409 TCTG 412
> Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220
Length=1629
Score = 182 bits (98), Expect = 9e-45
Identities = 262/339 (77%), Gaps = 20/339 (6%)
Strand=Plus/Plus
Query 985 GTAGATGTCAATGGCTTTCAAGTTCTTCCTTCACAGGTGGAATATGTGAGAT-CAATATT 1043
||||||||||||||||||||||||||||||||| ||| ||||| ||||| | || ||||
Sbjct 496 GTAGATGTCAATGGCTTTCAAGTTCTTCCTTCAGAGGCGGAATCTGTGAAACGCA-TATT 554
Query 1044 TGAAAGACACCCTGACATTGCAGTAGAGTTCCGAGCAAAGAACCAACATCTGAGGACATC 1103
|||| |||||| || || ||| || ||||||| ||||||||||||||||||||||||||
Sbjct 555 CGAAAAACACCCAGAAATGGCACTAAAGTTCCGGGCAAAGAACCAACATCTGAGGACATC 614
Query 1104 ATGCATGATTTTTC-TGCTTAGTTTAATTGAGACACTGTGCCAGTCACTTG-AAGAGC-T 1160
|||||| | | | | | || | |||| | || |||| || ||||| | |||| | |
Sbjct 615 ATGCATAAATGT-CGTCCTCAACCTAATCAAAACGTTGTGTCAATCACT-GCAAGA-CAT 671
Query 1161 CTCAAATGAAGATCTTGTGGA-A-GCAGA-CATTGCATTGACATATGTGAA-AGATGCAG 1216
|| | ||| || | || ||| | ||||| || ||| | |||||| |||| | || | |
Sbjct 672 TTCCATTGATGA-CATG-GGACAAGCAGAGCAA-GCACTAACATATCTGAATA-ATTCGG 727
Query 1217 GATTTAAGGTGGATTGGTTGGAGAAG-AAGCTGGACCAAGTAAAAGAAAAGAAGGA-GAA 1274
| ||||||||||||||||||||| | || ||||| ||||||| ||||||||| | | |
Sbjct 728 GCTTTAAGGTGGATTGGTTGGAGG-GTAAACTGGAGGAAGTAAAGGAAAAGAAG-ATGGA 785
Query 1275 AGAACTGTCTGATATGGTTCAGCTACAAGAAATGGAGGA 1313
||| |||| || || | || | | |||||| | |||||
Sbjct 786 AGAGCTGTTTGGTAAGACTCGGATGCAAGAATTAGAGGA 824
> Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996
Length=882
Score = 145 bits (78), Expect = 1e-33
Identities = 236/310 (76%), Gaps = 19/310 (6%)
Strand=Plus/Plus
Query 979 GGAAA-GGTAGATGTCAATGGCTTTCAAGTTCTTCCTTCACAGGTGGAAT-ATGTGAGAT 1036
||||| ||||||||||||||||||||||||||||||||||||||| |||| | |||| |
Sbjct 450 GGAAACGGTAGATGTCAATGGCTTTCAAGTTCTTCCTTCACAGGTAGAATCA-GTGA-AG 507
Query 1037 CAATA-TTTGAAAGACACCCTGACATTGCAGT-AGAGTTCCGAGC-AAAGAA-CCAACAT 1092
| | |||||||| |||| || ||||| | | | || || | ||| || ||| ||
Sbjct 508 CTTTTGTTTGAAAGTCACCAAGATTTTGCA-TCAAAATTTCGT-CTAAATAATCCAT-AT 564
Query 1093 CTGAGGACATCATGCATGATTTTTCTGCTT-AGTTTAATTGAGACACTGTGCC-AGTCAC 1150
||| ||| ||| ||||| | |||| ||| || |||| | || || |||| | || |
Sbjct 565 ATGAAGACGGCATACATGAATGTTCT-CTTGAGCTTAACCCAAACGCTATGCCGA-TCGC 622
Query 1151 TTGAAGAGCTCTCAAATGAAGATCT-TGTGGAAGCAGACATTGCATTGACATATGTGAAA 1209
| |||| ||||| ||||| | ||| | || | || | | |||| || ||||| ||| |
Sbjct 623 CTCAAGAACTCTCCAATGATGGTCTCTTTG-ATGCGGGCGCTGCACTGTCATATTTGAGA 681
Query 1210 GATGCAGGATTTAAGGTGGATTGGTTGGAGAAGAAGCT-GGACCAAGTAAAAGAAAAGAA 1268
|| ||||| |||||| ||||||||||||||||||| || || ||||||| ||||||||
Sbjct 682 GAAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACTTGGTG-AAGTAAAGGAAAAGAA 740
Query 1269 GGAGAAAGAA 1278
| ||||||||
Sbjct 741 GAAGAAAGAA 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60601579795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5