BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58440.1
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486292 jgi|Araly1|486292|fgenesh2_kg.5__2284__AT3G58440.1 1629 0.0
Ahg486272 jgi|Araly1|486272|fgenesh2_kg.5__2264__AT3G58200.1 165 1e-39
> Ahg486292 jgi|Araly1|486292|fgenesh2_kg.5__2284__AT3G58440.1
Length=1344
Score = 1629 bits (882), Expect = 0.0
Identities = 1181/1315 (90%), Gaps = 61/1315 (5%)
Strand=Plus/Plus
Query 1 ATGTCATTAGATTTGAAGATGCAAGATAAATTTACTTGGGTTTTGGAAAAGTTCTCATCT 60
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 1 ATGTCATTAGATTTGAAGATGCAAGAGAATTTTACTTGGGTTTTGGAAAACTTCTCATCT 60
Query 61 TTGAAAGATCAGTGCTACTCTCCCGTCTTCACGGTCGCCGGCTGCAATTGGCGTCTTCTT 120
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGCAAGAAGAGTGCTACTCTCCCGTCTTCACGGTCGCCGGCTGCAATTGGCGTCTTCTT 120
Query 121 TCTTTTCTCAAAGGAGCTA--A-GAATGATCGTTACTTTTCCGTGTATCTTGATCTTGAG 177
||| || || ||||| || | ||||||||||||||||||||||||||||||||||| |
Sbjct 121 GCTTGTCCCAGAGGAGTTAGGAGGAATGATCGTTACTTTTCCGTGTATCTTGATCTTGCG 180
Query 178 CCTGGATCTTTGCCACCAGGATGGAGAAGAGAAGTGAAATTTAGCATTACTCTTGACAAT 237
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 CCTGAATCTTTGCCACCAGGATGGAGAAGAGAAGTGAAATTTAGCATTACTCTTGTCAAT 240
Query 238 GTTTGCCCTAATACCG-ACAGAGTATTAGGAGGGCCATGCTTTTTCGATGCAAAGAGTAA 296
||||| ||| || || ||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 241 GTTTGGCCT-ATTGCGAACAGAGTATTAGGAGAGCCATGCTTTTTCGATGCAAAAACTAG 299
Query 297 CATTTGGGGTTTTCAAGATTTCTTGCTCCTTGAAAAACTT-GTTAATATAGCTGAAGGAT 355
|| |||||||||| |||||||||||||||||||||||||| | ||||| || |||||||
Sbjct 300 CAATTGGGGTTTTGAAGATTTCTTGCTCCTTGAAAAACTTCG-TAATAAAGGGGAAGGAT 358
Query 356 TTTTGGTGAATGACAGACTCACTATCGTCGCTGAAGTAGATGTTTTACCTTCTATTGTTG 415
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 359 TTTTGGTGAATGACAGACTCACTATCGTCGCTGAAGTACATGTTTTACCACCTATTGTTG 418
Query 416 TGCCATTGGAACCTGTGAAGATTATTTCATCTCAAG-AGAAGTTAgatgatgatgatgat 474
|||||||||||||||||||||||||| |||||| | |||||||||||||| || ||||
Sbjct 419 TGCCATTGGAACCTGTGAAGATTATTGCATCTC-TGAAGAAGTTAGATGAT-AT--TGAT 474
Query 475 gatTGTGACGACGCATCTGAAGAGAGTTCGGATGATGGAGATGCATCCCAGGAGTATACT 534
|| ||| || | ||| |||||||||||||||| |||||||||||||||| ||||
Sbjct 475 GA---TGA-GA---A--TGATGAGAGTTCGGATGATGAAGATGCATCCCAGGAGGATACA 525
Query 535 GATGATAATGATGATGAAGTTTGTGACATAAGTCGTTTGAACC--TAG-TGAATGCCATA 591
|||||||||||||||| ||||||||||||||||| ||||| || | | |||||||| ||
Sbjct 526 GATGATAATGATGATGGAGTTTGTGACATAAGTCTTTTGAGCCAATTGATGAATGCCTTA 585
Query 592 GAGAATGCTTTTTATAC-G-AG----T-AT--TAGAAGTTGTAATAGTTTGGTGGCTGAG 642
||| |||||| | ||| | || | || || ||||||||||| | || ||||||||
Sbjct 586 GAGGATGCTTCTCGTACGGAAGAAAATCATGGTATAAGTTGTAATACTGTGTTGGCTGAG 645
Query 643 ACTGAGGTTTCCAATGATGAAAATGATGATGCACCTAAAAAAGATGTTGATGATGA-G-G 700
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 646 ACTGAGGTTTCCAATGGTGAAAATGATGATGCACCTAAAAAAGATGTTGATGATGATGAG 705
Query 701 -CTTCATCTCTTGTTTTGAATGATAGTGCTAGAAACGGAAGTAGTATAGAACAAGTGAAA 759
||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 706 TCTTCAGCTCTTGTTTTGAATGATAGTGATAGAAACGGAAGTACTATAGAACAAGTGAAA 765
Query 760 AAGACGAGGCTTCATCTCGTGTTGGAGGATGCCTCT----C-----------GTGGTA-G 803
|||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 766 GTGACGAGGCTTCATCTCGTGTTGGAGGATGCCTCTCAGACATTTAAAAATGGTGGTACG 825
Query 804 GGATCCTAACACCGTGGCATGTGTTAC-GGAGACTTGTGATTATGTGCTTATGGAGATTC 862
|| | |||||||||||||| |||||| ||| ||||||||| ||||||||||||||||||
Sbjct 826 GG-GCTTAACACCGTGGCATCTGTTACGGGA-ACTTGTGATAATGTGCTTATGGAGATTC 883
Query 863 AATC-AGATA-AGGAAACAGTGGATATCAATGGGTTTGTGGTTGTTTCTTCCAAGGCGGA 920
|| | || || ||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 884 AA-CAAG-TACAGGAAACAGTGGATATCAATGGGTTTGAGGTTGTTTCTTCCAAGGTGGA 941
Query 921 ATCTGTGAGACGTATACTCGAAAGACACCCAGACATAT-CAGTGGAGTTTCGTGGAAAGA 979
|||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||||
Sbjct 942 ATCTGTGAGACGTATATTCGAAAGACACCCAGACAT-TGCTGTGGAGTTTCGTGGAAAGA 1000
Query 980 ACCAACAACTGAGGAACGCATGTATGAATTTCCTGCTCAGCTTAATCGAAACGATGTGCC 1039
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1001 ACCAACATCTGAGGAACGCATGTATGAATTTTCTGCTCAGCTTAATCGAGACGATGTGCC 1060
Query 1040 AGTCACTGGAGGAGCTCTCGAATGAAGATCTTGTGGAAGCAGACGTAGCGTTGACATACT 1099
| ||||| ||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 1061 AATCACTTGAGGAGCTCTCCAATGAAGATCTTGTGGAAGCAGACATTGCGTTGACATACT 1120
Query 1100 TGAGAGATGCAGGGTTTAAGGTTGATTGGTTGGAGAAGAAGCTGGACCAACTAAAGGAAA 1159
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1121 TGAGAGATGCAGGGTTTAAGGTGGATTGGTTGGAGAAGAAGCTGGACCAACTAAAGGAAA 1180
Query 1160 AGAAGGAGGAAGAGATGTCTGGTTTGGCCAGGCTCCATGAGATAGAGGAAAATCTAGTGA 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 AGAAGGAGGAAGAGATGTCTGGTTTGGCCAGGCTCCATGAGATAGAGGAAAATCTAGTGA 1240
Query 1220 TATTGAAGCAAAAGTGGTCAGACCTGGGTGCTCTTGCGGAGAAGGAGAAGGCAGA 1274
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1241 TATTGGAGCAAAAGTGGTCAGACCTGGATGCTCTTGCGGAGAAGGAGAAGGCAGA 1295
> Ahg486272 jgi|Araly1|486272|fgenesh2_kg.5__2264__AT3G58200.1
Length=988
Score = 165 bits (89), Expect = 1e-39
Identities = 262/341 (77%), Gaps = 29/341 (9%)
Strand=Plus/Plus
Query 848 TGCTTATGGAGA-TTCAATCAGAT-AA-G--GAAA-CAGTGGATATCAATGGGTTT-GTG 900
|||||| ||| | ||| ||||| | || | |||| || | ||| ||||||||||| |
Sbjct 507 TGCTTAAGGAAACTTC-ATCAG-TAAAGGAAGAAATCA-TTGATGTCAATGGGTTTCAT- 562
Query 901 GTTGTTTCTTCCAAGGCGGAATCTGTGAGACGTATACTCGAAAGACACCCAGACATAT-C 959
||| || ||||| ||| ||||| ||| || | | | | |||||| ||||||| || | |
Sbjct 563 GTTCTTCCTTCCCAGGTGGAATTTGTTAGCCCTGTTTTTGAAAGATACCCAGAAAT-TGC 621
Query 960 AGTGGAGT-TTCGTGG-AAAGAACCAACAACTGAGGAA-CGCATGTATGAATTTCCTGCT 1016
| | ||| ||| || |||||| ||||| ||| ||| |||||| ||| || |||| ||
Sbjct 622 A-T-CAGTATTCCAGGCAAAGAAGCAACATTTGA-GAACCGCATGCATGTATGTCCTCCT 678
Query 1017 CAGCTTAATCGAAACGA-TGTGCCAGTCACTGGAGGAGCTCTCG-AATGAAGATCTTGTG 1074
|||| ||||||| || | |||||||||||||||| ||||||| | | ||| |||||||||
Sbjct 679 CAGCCTAATCGAGAC-ACTGTGCCAGTCACTGGAAGAGCTCT-GCAGTGATGATCTTGTG 736
Query 1075 GAAGCAGACGTA-GCGTTGAC-ATACTTGAGAGATGCAGGG-TTTAAGGTTGATTGGTTG 1131
| || ||| | || || || |||| ||| | | | ||| ||||||||||||||||||
Sbjct 737 GGAGGTGAC-AATGCATT-ACAATACCTGAAATTTTC-GGGCTTTAAGGTTGATTGGTTG 793
Query 1132 GAGAAGAAGCTGGACCAACTAAAGGAAAAGAAGGAGGAAGA 1172
|||||||||||||| || | |||| ||||||| |||||||
Sbjct 794 GAGAAGAAGCTGGAGGAAATTAAGGTAAAGAAGAAGGAAGA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67800636100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5