BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58450.1
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486294 jgi|Araly1|486294|fgenesh2_kg.5__2286__AT3G58450.1 933 0.0
> Ahg486294 jgi|Araly1|486294|fgenesh2_kg.5__2286__AT3G58450.1
Length=675
Score = 933 bits (505), Expect = 0.0
Identities = 646/708 (91%), Gaps = 33/708 (5%)
Strand=Plus/Plus
Query 21 GGAGTAAAAAATGGAGACTTACGTTGATGCGATTGGAGAGGACACGGCAGCCACAACAAC 80
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAGAAAAAAATGGAGACGTACGTTGATGCGATTGGAGAGGACACGGCAGCCACAACAAC 60
Query 81 GACGGCGGAGACGGCTGCAAATAAGAACAAGAAGAAGTTGAAAGTGATGGTTGCGATTGA 140
|| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GA---CGGAGACGGATACAAATAAGAACAAGAAGAAGTTGAAAGTGATGGTTGCGATTGA 117
Query 141 TGAGAGCAAGAACAGCTTCGATGCGTTGGAATGGGCTGTGGATCATCTCAGAGTTGTTAT 200
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 118 TGAAAGCAAAAACAGCTTCGATGCTTTGGAATGGGCTGTGGATCATCTCAGAGTTGTTAT 177
Query 201 TAGTGCCGAACCGGAAACCGGTCAAGAAGGCGGTTTACTTACGTTGCTTCATGTTCACCC 260
||| || ||||||||||| |||||||||||||||||||||||| || |||||||||||||
Sbjct 178 TAGCGCTGAACCGGAAACTGGTCAAGAAGGCGGTTTACTTACGCTGGTTCATGTTCACCC 237
Query 261 AACGTACCTTCAATATATCTATCCTTCTGGTGGAACTGCTTCGGCGGTGTATGCGACAGA 320
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 238 AACGTACCTTCAATATATCTACCCTTCTGGTGGAACTGCTTCGGCGGTGTATGCGACAGA 297
Query 321 TTCAGTGCCCGAACCAATGAGGAAAGCACGAGAAGAGAGTACGACAAACTTATTCACACG 380
||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 298 TTCTGTGCCCGAACCAATGAGGAAAGCACGGGAAGAGAGTACGACCAACTTATTCACACG 357
Query 381 GGCATTGGAGATATGCCGAGGCAAAATGGTGAAGACAGAGACTATGATATTGGAAGGAGA 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGCATTGGAGATATGCCGAGGCAAAATGGTGAAGACAGAGACTATGATATTGGAAGGAGA 417
Query 441 TCCTAAGGAGATGATATGCCAAGCCGTCGAGCAAACACATGTTGATCTTCTTGTTGTTGG 500
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 418 TCCTAAGGAGATGATATGCCAAGCGGTCGAGCAAACTCACGTTGATCTTCTTGTTGTTGG 477
Query 501 TAGCCGTGGACTCGGCATGATCAAAAGGGCATTTTTAGGGAGTGTAAGTGACTACTGTGC 560
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 478 TAGCCGTGGACTCGGCATGATCAAAAGGGCGTTTTTAGGGAGTGTAAGTGACTACTGTGC 537
Query 561 CCAACATGCAAAATGTCCAATTCTCATTGTGCGACCGCCTAGAGAAACCTCAACTAGTAA 620
||||||||||||||||||||||||||||||||| ||| | | || ||| |
Sbjct 538 CCAACATGCAAAATGTCCAATTCTCATTGTGCGGCCG--T-------C-TC---TAGGCA 584
Query 621 CACGAAGGAACACAAGAGCAAGTGAGGAAGGAAACCATGTTATAATAGCTTCTGTTTCAT 680
| || | || | | | | | || | |||||||||||||| || |||||| ||||||
Sbjct 585 -A-GA-G---CA-A-GTG-A-G-GA--A-GGAAACCATGTTATGATCGCTTCTATTTCAT 630
Query 681 TCCGTTTGTACTCCGTAGAGAAGaaaaaaaaGTGTGCCGCCAATAAAC 728
|| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 631 TCTGTTTGTACTCCGTAGAGG-GAAAAAAA--TGTGCCGCCAATAAAC 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27791606493
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5